Wall clock time and date at job start Fri Apr 10 2020 18:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46961 * 2 1 4 4 C 1.52996 * 109.47361 * 120.00151 * 2 1 3 5 5 S 1.81404 * 109.47108 * 295.00118 * 4 2 1 6 6 C 1.81392 * 101.92554 * 179.97438 * 5 4 2 7 7 O 1.42098 * 108.57727 * 294.48956 * 5 4 2 8 8 O 1.42100 * 108.57773 * 65.50804 * 5 4 2 9 9 C 1.50707 * 109.47375 * 240.00017 * 2 1 3 10 10 O 1.21267 * 120.00003 * 240.00283 * 9 2 1 11 11 N 1.34774 * 119.99811 * 59.99618 * 9 2 1 12 12 C 1.39260 * 119.99923 * 185.58392 * 11 9 2 13 13 C 1.39670 * 119.57787 * 18.83541 * 12 11 9 14 14 C 1.38658 * 119.50057 * 180.02562 * 13 12 11 15 15 C 1.38346 * 118.66468 * 359.97438 * 14 13 12 16 16 C 1.40570 * 119.13295 * 0.02562 * 15 14 13 17 17 C 1.41344 * 119.79081 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99765 * 8.92929 * 17 16 15 19 19 C 1.40027 * 120.00299 * 188.93332 * 17 16 15 20 20 N 1.30738 * 119.99887 * 196.06764 * 19 17 16 21 21 Si 1.86804 * 119.99942 * 16.07189 * 19 17 16 22 22 H 1.48500 * 109.46803 * 270.00144 * 21 19 17 23 23 H 1.48493 * 109.47173 * 29.99762 * 21 19 17 24 24 H 1.48498 * 109.46809 * 149.99998 * 21 19 17 25 25 N 1.31906 * 119.57496 * 199.12757 * 12 11 9 26 26 H 1.09001 * 109.46918 * 59.99990 * 1 2 3 27 27 H 1.09002 * 109.46961 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47339 * 300.00146 * 1 2 3 29 29 H 1.09005 * 109.47342 * 54.99734 * 4 2 1 30 30 H 1.08994 * 109.47740 * 175.00218 * 4 2 1 31 31 H 1.09004 * 109.47276 * 60.00076 * 6 5 4 32 32 H 1.09002 * 109.47430 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.47205 * 300.00424 * 6 5 4 34 34 H 0.96996 * 119.99948 * 5.58649 * 11 9 2 35 35 H 1.08002 * 120.24653 * 0.03972 * 13 12 11 36 36 H 1.07996 * 120.66667 * 179.97438 * 14 13 12 37 37 H 1.08001 * 120.43032 * 180.02562 * 15 14 13 38 38 H 0.97003 * 119.99811 * 354.93238 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 16 1.5601 0.2156 2.7266 6 6 2.2538 -0.8027 4.0578 7 8 2.2381 1.4643 2.7109 8 8 0.1433 0.1967 2.8342 9 6 2.0324 -0.7104 -1.2305 10 8 2.7296 -1.6964 -1.1192 11 7 1.7068 -0.2500 -2.4546 12 6 2.0722 -0.9699 -3.5892 13 6 2.4093 -2.3201 -3.4701 14 6 2.7735 -3.0353 -4.6008 15 6 2.7909 -2.3837 -5.8211 16 6 2.4410 -1.0233 -5.8756 17 6 2.4546 -0.3438 -7.1149 18 1 2.5911 -0.8969 -8.0325 19 6 2.2913 1.0464 -7.1531 20 7 1.9902 1.6385 -8.2791 21 14 2.5038 2.0549 -5.5950 22 1 1.1976 2.1697 -4.8979 23 1 3.4841 1.3862 -4.7024 24 1 2.9983 3.4102 -5.9464 25 7 2.1011 -0.3666 -4.7618 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6054 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2056 31 1 3.3339 -0.8789 3.9319 32 1 2.0323 -0.3423 5.0207 33 1 1.8127 -1.7988 4.0209 34 1 1.2179 0.5829 -2.5452 35 1 2.3864 -2.8034 -2.5045 36 1 3.0381 -4.0799 -4.5303 37 1 3.0697 -2.9134 -6.7201 38 1 1.9521 1.1257 -9.1016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:14 Heat of formation + Delta-G solvation = -104.929687 kcal Electronic energy + Delta-G solvation = -23634.091835 eV Core-core repulsion = 19988.741404 eV Total energy + Delta-G solvation = -3645.350431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.83723 -40.02251 -37.97600 -37.09074 -36.34237 -35.85779 -35.30648 -32.97163 -31.37051 -30.46488 -28.37787 -27.38209 -25.65261 -23.64243 -23.05370 -21.20606 -20.23821 -19.76928 -19.01036 -18.40849 -17.40593 -17.15683 -16.94193 -16.78108 -16.58013 -16.21378 -15.66396 -15.59406 -15.10835 -14.78577 -14.33812 -14.26467 -14.08356 -13.89570 -13.83087 -13.73178 -13.70163 -13.01685 -12.97948 -12.80092 -12.64197 -12.54057 -12.30659 -12.18253 -11.97862 -11.87260 -11.60275 -11.47117 -11.05863 -10.67850 -10.39431 -9.86572 -9.33282 -9.23564 -6.81104 -0.91944 0.47699 0.75356 1.47866 1.50404 1.70274 1.79498 1.87899 1.98433 2.38336 2.61632 2.72554 3.15544 3.25960 3.53674 3.59032 3.71344 4.04171 4.09161 4.15996 4.24276 4.40615 4.44510 4.63173 4.65587 4.69038 4.76820 4.79805 4.96098 5.03772 5.24086 5.34374 5.38346 5.42041 5.71372 5.80141 5.93789 6.25749 6.41038 6.63876 6.97187 7.51853 7.92136 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.023013 B = 0.003549 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.432289 B = 7887.438782 C = 8684.496068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.096 4.096 3 H 0.130 0.870 4 C -0.598 4.598 5 S 2.436 3.564 6 C -0.637 4.637 7 O -0.981 6.981 8 O -0.966 6.966 9 C 0.528 3.472 10 O -0.533 6.533 11 N -0.653 5.653 12 C 0.371 3.629 13 C -0.308 4.308 14 C -0.030 4.030 15 C -0.294 4.294 16 C 0.258 3.742 17 C -0.512 4.512 18 H 0.069 0.931 19 C 0.022 3.978 20 N -0.825 5.825 21 Si 1.172 2.828 22 H -0.272 1.272 23 H -0.291 1.291 24 H -0.321 1.321 25 N -0.609 5.609 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.158 0.842 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.154 0.846 34 H 0.419 0.581 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.114 0.886 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.226 -4.523 24.235 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.118 4.118 3 H 0.148 0.852 4 C -0.726 4.726 5 S 2.621 3.379 6 C -0.791 4.791 7 O -0.978 6.978 8 O -0.963 6.963 9 C 0.316 3.684 10 O -0.409 6.409 11 N -0.299 5.299 12 C 0.139 3.861 13 C -0.332 4.332 14 C -0.054 4.054 15 C -0.316 4.316 16 C 0.133 3.867 17 C -0.545 4.545 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.448 5.448 21 Si 1.002 2.998 22 H -0.198 1.198 23 H -0.219 1.219 24 H -0.253 1.253 25 N -0.334 5.334 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.176 0.824 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.172 0.828 34 H 0.256 0.744 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.132 0.868 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.596 -2.079 24.803 24.941 hybrid contribution 0.609 -2.828 -1.826 3.421 sum -0.987 -4.907 22.976 23.515 Atomic orbital electron populations 1.22379 0.90407 1.05205 1.05875 1.21080 0.99248 1.01486 0.89964 0.85247 1.30322 1.13804 1.15100 1.13341 1.07201 0.75116 0.76756 0.78779 1.30086 1.15156 1.16710 1.17099 1.93565 1.76740 1.40836 1.86655 1.93542 1.29467 1.87440 1.85874 1.21034 0.78856 0.84553 0.83969 1.90576 1.37045 1.26900 1.86403 1.43390 1.55999 1.26460 1.04036 1.18485 0.92950 0.88924 0.85692 1.21882 1.16787 0.93448 1.01080 1.21332 0.93131 0.99551 0.91363 1.21784 1.15105 0.96168 0.98582 1.18371 0.87704 0.90800 0.89825 1.20662 1.46071 0.94989 0.92783 0.91288 1.28406 0.87839 0.97618 1.05700 1.70636 1.30800 1.42207 1.01114 0.81756 0.78551 0.69751 0.69700 1.19805 1.21928 1.25295 1.66171 1.29797 1.38493 0.98960 0.90300 0.90464 0.88055 0.82368 0.82947 0.83222 0.84020 0.82794 0.74400 0.83084 0.83862 0.86826 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.73 71.98 0.63 -2.59 16 2 C -0.10 -1.85 2.72 -11.54 -0.03 -1.88 16 3 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.60 -7.64 4.61 71.98 0.33 -7.31 16 5 S 2.44 28.41 5.15 -56.49 -0.29 28.12 16 6 C -0.64 -2.02 10.62 113.37 1.20 -0.81 16 7 O -0.98 -19.82 18.10 -127.37 -2.31 -22.12 16 8 O -0.97 -17.14 15.46 -127.37 -1.97 -19.11 16 9 C 0.53 15.32 7.00 87.66 0.61 15.94 16 10 O -0.53 -17.92 12.72 -2.99 -0.04 -17.95 16 11 N -0.65 -22.35 5.26 -308.38 -1.62 -23.98 16 12 C 0.37 16.24 7.51 133.25 1.00 17.25 16 13 C -0.31 -12.92 8.83 22.72 0.20 -12.72 16 14 C -0.03 -1.22 10.15 22.40 0.23 -0.99 16 15 C -0.29 -13.78 9.83 22.86 0.22 -13.56 16 16 C 0.26 13.58 6.27 40.19 0.25 13.83 16 17 C -0.51 -28.55 9.51 23.47 0.22 -28.32 16 18 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 19 C 0.02 1.21 5.51 85.29 0.47 1.69 16 20 N -0.82 -45.58 13.65 21.84 0.30 -45.29 16 21 Si 1.17 55.83 25.93 68.60 1.78 57.61 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.29 -14.23 6.55 99.48 0.65 -13.58 16 24 H -0.32 -14.85 7.11 99.48 0.71 -14.14 16 25 N -0.61 -30.32 5.06 -186.36 -0.94 -31.26 16 26 H 0.08 1.34 7.70 -2.39 -0.02 1.33 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.10 1.72 5.40 -2.39 -0.01 1.71 16 29 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.15 1.66 7.95 -2.39 -0.02 1.64 16 31 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.42 12.49 8.42 -92.71 -0.78 11.71 16 35 H 0.15 5.96 5.33 -3.17 -0.02 5.94 16 36 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 37 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 38 H 0.28 15.12 8.73 -92.71 -0.81 14.31 16 Total: -1.00 -77.87 329.95 0.47 -77.40 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.22 Total: 16.07 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 5.35 Total: -19.49 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -2.27 Total: -100.52 kcal Atomic # 8 Polarization: -54.87 SS G_CDS: -4.31 Total: -59.18 kcal Atomic # 14 Polarization: 55.83 SS G_CDS: 1.78 Total: 57.61 kcal Atomic # 16 Polarization: 28.41 SS G_CDS: -0.29 Total: 28.12 kcal Total: -77.87 0.47 -77.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.532 kcal (2) G-P(sol) polarization free energy of solvation -77.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds