Wall clock time and date at job start Fri Apr 10 2020 18:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 S 1.81401 * 109.47171 * 119.99986 * 2 1 3 5 5 O 1.42095 * 108.57860 * 305.51208 * 4 2 1 6 6 O 1.42102 * 108.57468 * 174.48325 * 4 2 1 7 7 C 1.81396 * 101.92098 * 60.00227 * 4 2 1 8 8 C 1.50699 * 109.47172 * 180.02562 * 7 4 2 9 9 O 1.21270 * 119.99958 * 359.97438 * 8 7 4 10 10 N 1.34776 * 120.00012 * 179.97438 * 8 7 4 11 11 C 1.39269 * 119.99964 * 185.57631 * 10 8 7 12 12 C 1.39677 * 119.57439 * 18.84009 * 11 10 8 13 13 C 1.38648 * 119.49539 * 180.02562 * 12 11 10 14 14 C 1.38350 * 118.67018 * 359.74722 * 13 12 11 15 15 C 1.40580 * 119.12988 * 0.49956 * 14 13 12 16 16 C 1.41334 * 119.78852 * 179.76636 * 15 14 13 17 17 H 1.08006 * 120.00068 * 8.66345 * 16 15 14 18 18 C 1.40023 * 120.00186 * 188.65792 * 16 15 14 19 19 N 1.30745 * 120.00258 * 195.97429 * 18 16 15 20 20 Si 1.86800 * 119.99570 * 15.97840 * 18 16 15 21 21 H 1.48499 * 109.47452 * 269.99427 * 20 18 16 22 22 H 1.48495 * 109.47573 * 30.00071 * 20 18 16 23 23 H 1.48507 * 109.47135 * 149.99717 * 20 18 16 24 24 N 1.31903 * 119.57571 * 198.86332 * 11 10 8 25 25 H 1.09005 * 109.47169 * 299.99813 * 1 2 3 26 26 H 1.08997 * 109.47395 * 59.99972 * 1 2 3 27 27 H 1.09004 * 109.47121 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46851 * 240.00291 * 2 1 3 29 29 H 1.08995 * 109.47188 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46856 * 300.00181 * 3 2 1 31 31 H 1.09005 * 109.46943 * 60.00049 * 3 2 1 32 32 H 1.08994 * 109.47482 * 59.99442 * 7 4 2 33 33 H 1.09003 * 109.46986 * 299.99904 * 7 4 2 34 34 H 0.96998 * 120.00306 * 5.58151 * 10 8 7 35 35 H 1.08002 * 120.24734 * 0.02562 * 12 11 10 36 36 H 1.08000 * 120.66569 * 180.02562 * 13 12 11 37 37 H 1.07999 * 120.43419 * 180.24614 * 14 13 12 38 38 H 0.96992 * 119.99715 * 354.93531 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 8 1.5480 -0.2495 2.6248 6 8 3.5497 -0.9572 1.3989 7 6 1.4230 -2.5108 1.2747 8 6 1.8271 -3.3799 2.4376 9 8 2.5267 -2.9271 3.3186 10 7 1.4110 -4.6604 2.4986 11 6 1.6860 -5.4290 3.6269 12 6 2.0257 -4.7971 4.8254 13 6 2.2997 -5.5639 5.9476 14 6 2.2222 -6.9414 5.8453 15 6 1.8800 -7.5177 4.6096 16 6 1.8017 -8.9237 4.4882 17 1 1.8655 -9.5461 5.3685 18 6 1.6412 -9.5096 3.2266 19 7 1.2591 -10.7562 3.1286 20 14 1.9733 -8.5103 1.6837 21 1 0.7233 -7.8337 1.2536 22 1 3.0150 -7.4912 1.9686 23 1 2.4455 -9.4118 0.6022 24 7 1.6228 -6.7442 3.5500 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.7894 -2.9508 0.3472 33 1 0.3361 -2.4370 1.2372 34 1 0.9201 -5.0467 1.7565 35 1 2.0746 -3.7194 4.8775 36 1 2.5639 -5.0951 6.8840 37 1 2.4259 -7.5659 6.7026 38 1 1.1578 -11.2966 3.9276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882478250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:22 Heat of formation + Delta-G solvation = -106.357090 kcal Electronic energy + Delta-G solvation = -23703.985489 eV Core-core repulsion = 20058.573161 eV Total energy + Delta-G solvation = -3645.412328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86559 -40.00519 -38.09135 -37.08026 -36.45366 -35.95119 -35.46461 -33.01333 -32.49721 -30.66637 -28.15351 -27.28680 -24.41579 -23.65904 -23.45827 -21.70558 -20.38288 -19.77057 -19.16507 -18.59606 -17.67976 -17.34922 -17.14850 -16.91817 -16.50319 -16.28641 -15.75129 -15.50602 -15.25386 -14.94661 -14.51722 -14.28217 -14.19880 -14.10186 -13.85517 -13.67501 -13.18823 -13.13633 -13.06294 -13.02083 -12.78931 -12.36439 -12.30856 -12.23228 -12.04703 -11.90700 -11.68616 -11.15307 -11.11333 -11.05893 -10.45717 -9.89707 -9.36965 -9.30444 -6.83037 -1.16762 0.36899 0.71046 1.31063 1.48424 1.59973 1.69193 1.71942 1.97971 2.39130 2.59586 2.71720 2.99323 3.24798 3.52276 3.61123 3.64804 3.96321 4.03449 4.16042 4.23928 4.35137 4.58255 4.65426 4.66118 4.68891 4.72033 4.79822 4.91734 5.15309 5.27554 5.30598 5.33508 5.37561 5.68029 5.72662 5.88547 6.13536 6.36013 6.58695 6.79663 7.45017 7.90594 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.024329 B = 0.003699 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.635694 B = 7567.034342 C = 8305.723723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.538 4.538 3 C -0.158 4.158 4 S 2.421 3.579 5 O -0.967 6.967 6 O -0.976 6.976 7 C -0.649 4.649 8 C 0.534 3.466 9 O -0.548 6.548 10 N -0.637 5.637 11 C 0.369 3.631 12 C -0.315 4.315 13 C -0.031 4.031 14 C -0.289 4.289 15 C 0.257 3.743 16 C -0.509 4.509 17 H 0.070 0.930 18 C 0.021 3.979 19 N -0.822 5.822 20 Si 1.171 2.829 21 H -0.265 1.265 22 H -0.293 1.293 23 H -0.318 1.318 24 N -0.603 5.603 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.180 0.820 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.213 0.787 33 H 0.212 0.788 34 H 0.428 0.572 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.117 0.883 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 20.672 -13.380 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.652 4.652 3 C -0.217 4.217 4 S 2.605 3.395 5 O -0.965 6.965 6 O -0.973 6.973 7 C -0.776 4.776 8 C 0.322 3.678 9 O -0.426 6.426 10 N -0.284 5.284 11 C 0.137 3.863 12 C -0.339 4.339 13 C -0.055 4.055 14 C -0.311 4.311 15 C 0.132 3.868 16 C -0.542 4.542 17 H 0.088 0.912 18 C -0.197 4.197 19 N -0.444 5.444 20 Si 1.000 3.000 21 H -0.190 1.190 22 H -0.221 1.221 23 H -0.250 1.250 24 N -0.328 5.328 25 H 0.088 0.912 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.197 0.803 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.230 0.770 33 H 0.229 0.771 34 H 0.267 0.733 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.135 0.865 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.129 20.733 -14.362 25.558 hybrid contribution -0.207 -0.884 2.349 2.518 sum -4.336 19.850 -12.014 23.604 Atomic orbital electron populations 1.22011 0.88101 1.05895 1.05921 1.29874 1.08237 1.09167 1.17924 1.21851 1.02194 0.91790 1.05854 1.08213 0.75229 0.77181 0.78828 1.93510 1.79401 1.74457 1.49088 1.93522 1.29984 1.85988 1.87784 1.30944 1.19305 1.21154 1.06176 1.20151 0.78743 0.81900 0.87014 1.90775 1.37521 1.73526 1.40784 1.43098 1.55260 1.11198 1.18843 1.18393 0.93644 0.87894 0.86393 1.21879 1.17515 1.01702 0.92813 1.21316 0.93132 0.92975 0.98043 1.21807 1.14962 0.95434 0.98947 1.18387 0.87816 0.92942 0.87639 1.20670 1.46052 0.91006 0.96433 0.91202 1.28491 0.88070 0.96820 1.06332 1.70633 1.29423 1.09046 1.35317 0.81809 0.78535 0.71015 0.68613 1.19042 1.22135 1.25038 1.66189 1.30323 1.03946 1.32300 0.91190 0.87607 0.88417 0.80295 0.91290 0.86820 0.91445 0.76989 0.77078 0.73339 0.83836 0.84036 0.86532 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.63 8.94 71.98 0.64 0.01 16 2 C -0.54 -4.15 3.31 30.59 0.10 -4.05 16 3 C -0.16 -1.48 9.20 71.98 0.66 -0.82 16 4 S 2.42 50.45 3.48 -56.49 -0.20 50.25 16 5 O -0.97 -28.54 17.76 -125.74 -2.23 -30.77 16 6 O -0.98 -29.83 17.95 -125.76 -2.26 -32.09 16 7 C -0.65 -9.73 5.84 71.24 0.42 -9.32 16 8 C 0.53 16.62 7.69 87.66 0.67 17.30 16 9 O -0.55 -22.39 12.42 -0.13 0.00 -22.39 16 10 N -0.64 -21.61 5.41 -308.37 -1.67 -23.28 16 11 C 0.37 16.57 7.51 133.25 1.00 17.57 16 12 C -0.31 -14.26 8.83 22.72 0.20 -14.06 16 13 C -0.03 -1.33 10.15 22.39 0.23 -1.11 16 14 C -0.29 -13.88 9.83 22.87 0.22 -13.66 16 15 C 0.26 13.59 6.27 40.19 0.25 13.84 16 16 C -0.51 -28.17 9.51 23.46 0.22 -27.94 16 17 H 0.07 3.93 8.06 -2.91 -0.02 3.90 16 18 C 0.02 1.12 5.51 85.29 0.47 1.59 16 19 N -0.82 -44.58 13.65 21.84 0.30 -44.29 16 20 Si 1.17 53.88 25.93 68.60 1.78 55.66 16 21 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.29 -14.04 6.55 99.48 0.65 -13.39 16 23 H -0.32 -14.16 7.11 99.48 0.71 -13.46 16 24 N -0.60 -29.97 5.07 -186.35 -0.95 -30.91 16 25 H 0.07 0.48 8.06 -2.38 -0.02 0.46 16 26 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.10 -0.12 6.55 -2.39 -0.02 -0.13 16 28 H 0.18 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.21 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.21 1.06 6.87 -2.39 -0.02 1.04 16 34 H 0.43 11.23 8.83 -92.71 -0.82 10.42 16 35 H 0.14 6.46 5.33 -3.17 -0.02 6.44 16 36 H 0.14 5.12 8.06 -2.91 -0.02 5.10 16 37 H 0.12 5.22 8.06 -2.91 -0.02 5.20 16 38 H 0.28 14.90 8.72 -92.71 -0.81 14.09 16 Total: -1.00 -86.22 332.42 0.05 -86.17 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.18 Total: 12.30 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 5.10 Total: -20.65 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -2.32 Total: -98.48 kcal Atomic # 8 Polarization: -80.76 SS G_CDS: -4.49 Total: -85.25 kcal Atomic # 14 Polarization: 53.88 SS G_CDS: 1.78 Total: 55.66 kcal Atomic # 16 Polarization: 50.45 SS G_CDS: -0.20 Total: 50.25 kcal Total: -86.22 0.05 -86.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882478250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.188 kcal (2) G-P(sol) polarization free energy of solvation -86.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds