Wall clock time and date at job start Fri Apr 10 2020 18:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34018 * 119.56934 * 2 1 4 4 C 1.33776 * 122.05965 * 179.97438 * 3 2 1 5 5 C 1.34850 * 121.03258 * 359.97438 * 4 3 2 6 6 C 1.41730 * 119.01372 * 359.97438 * 5 4 3 7 7 O 1.22173 * 120.92138 * 179.97438 * 6 5 4 8 8 C 1.35108 * 119.57026 * 180.26347 * 2 1 3 9 9 O 1.36094 * 120.56012 * 0.02562 * 8 2 1 10 10 C 1.42894 * 117.00160 * 270.23924 * 9 8 2 11 11 C 1.50700 * 109.47100 * 179.97438 * 10 9 8 12 12 O 1.20822 * 119.99860 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99748 * 180.02562 * 11 10 9 14 14 C 1.45208 * 116.99661 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46703 * 180.02562 * 14 13 11 16 16 O 1.42903 * 109.47115 * 65.00440 * 15 14 13 17 17 C 1.42901 * 113.99826 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.47152 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00274 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00444 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99901 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00338 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47213 * 60.00581 * 22 20 18 24 24 H 1.48500 * 109.46790 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47200 * 300.00414 * 22 20 18 26 26 H 1.08998 * 109.47047 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46925 * 120.00327 * 1 2 3 28 28 H 1.08996 * 109.47355 * 240.00508 * 1 2 3 29 29 H 1.08001 * 119.48790 * 180.02562 * 4 3 2 30 30 H 1.07994 * 120.49152 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47300 * 300.00482 * 10 9 8 32 32 H 1.09004 * 109.46925 * 59.99973 * 10 9 8 33 33 H 1.08999 * 109.46902 * 300.00278 * 14 13 11 34 34 H 1.09000 * 109.46759 * 59.99999 * 14 13 11 35 35 H 1.09002 * 109.46842 * 184.99636 * 15 14 13 36 36 H 1.08992 * 109.47537 * 304.99943 * 15 14 13 37 37 H 1.09002 * 109.46711 * 299.99868 * 17 16 15 38 38 H 1.09004 * 109.47404 * 59.99350 * 17 16 15 39 39 H 0.96993 * 120.00213 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1683 1.1656 0.0000 4 6 3.5048 1.2238 0.0005 5 6 4.2496 0.0996 0.0016 6 6 3.5959 -1.1580 0.0027 7 8 4.2364 -2.1984 0.0032 8 6 2.1737 -1.1751 -0.0054 9 8 1.4960 -2.3552 -0.0114 10 6 1.1677 -2.9213 1.2590 11 6 0.4239 -4.2160 1.0549 12 8 0.1985 -4.6133 -0.0636 13 8 0.0119 -4.9276 2.1159 14 6 -0.6980 -6.1648 1.8442 15 6 -1.0855 -6.8311 3.1659 16 8 -2.0207 -6.0033 3.8604 17 6 -2.4501 -6.5373 5.1144 18 6 -3.4283 -5.5875 5.7563 19 1 -3.6950 -4.6678 5.2568 20 6 -3.9827 -5.8924 6.9813 21 7 -3.6576 -7.0121 7.5898 22 14 -5.1958 -4.7154 7.7766 23 1 -6.3703 -4.5381 6.8855 24 1 -5.6419 -5.2703 9.0798 25 1 -4.5390 -3.4019 7.9971 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 -0.3634 -0.5137 0.8900 29 1 3.9951 2.1861 0.0009 30 1 5.3280 0.1567 0.0015 31 1 2.0831 -3.1120 1.8192 32 1 0.5396 -2.2256 1.8154 33 1 -1.5983 -5.9484 1.2691 34 1 -0.0549 -6.8350 1.2738 35 1 -1.5392 -7.8015 2.9642 36 1 -0.1949 -6.9668 3.7793 37 1 -2.9321 -7.5015 4.9528 38 1 -1.5878 -6.6673 5.7685 39 1 -4.0474 -7.2265 8.4517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923951246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:39 Heat of formation + Delta-G solvation = -192.822546 kcal Electronic energy + Delta-G solvation = -24902.635317 eV Core-core repulsion = 20778.427943 eV Total energy + Delta-G solvation = -4124.207374 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.52678 -40.46038 -39.38204 -38.11086 -37.00545 -35.99596 -33.48619 -32.95030 -32.79320 -30.56157 -29.21938 -27.93478 -26.87472 -24.68393 -23.14386 -22.67743 -22.26490 -21.09333 -19.27153 -18.98271 -17.74932 -17.38440 -17.05640 -16.77177 -16.65975 -16.26312 -15.88922 -15.62769 -14.89360 -14.80095 -14.51786 -14.45963 -14.23993 -14.12936 -13.90297 -13.53458 -13.27576 -13.21168 -12.79269 -12.57214 -12.33638 -11.95551 -11.45473 -11.02220 -10.96173 -10.87119 -10.78449 -10.42686 -10.35648 -10.17797 -10.07268 -9.70363 -9.16630 -9.01252 -8.89609 -8.23478 -6.13874 -4.15904 0.36426 0.48977 1.69038 2.19412 2.21177 2.95879 3.29885 3.32768 3.36287 3.45454 3.85482 4.00356 4.29309 4.29948 4.60735 4.61532 4.67039 4.73583 4.77472 4.92979 4.98171 5.03227 5.21723 5.22510 5.23593 5.43969 5.48069 5.58465 5.84754 5.90574 6.05841 6.49526 6.52302 6.75013 7.03693 7.37919 7.43396 7.75074 7.80138 8.10320 8.49927 8.96058 9.48769 10.97646 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.002485 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.345604 B =11266.792696 C =12275.522609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.123 3.877 3 O -0.205 6.205 4 C 0.108 3.892 5 C -0.301 4.301 6 C 0.383 3.617 7 O -0.473 6.473 8 C -0.092 4.092 9 O -0.278 6.278 10 C 0.066 3.934 11 C 0.466 3.534 12 O -0.493 6.493 13 O -0.338 6.338 14 C 0.076 3.924 15 C 0.061 3.939 16 O -0.391 6.391 17 C 0.194 3.806 18 C -0.516 4.516 19 H 0.066 0.934 20 C 0.056 3.944 21 N -0.899 5.899 22 Si 0.909 3.091 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.208 0.792 30 H 0.162 0.838 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.206 17.946 -15.284 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.074 3.926 3 O -0.107 6.107 4 C 0.043 3.957 5 C -0.321 4.321 6 C 0.271 3.729 7 O -0.357 6.357 8 C -0.138 4.138 9 O -0.194 6.194 10 C -0.009 4.009 11 C 0.307 3.693 12 O -0.380 6.380 13 O -0.254 6.254 14 C 0.003 3.997 15 C -0.016 4.016 16 O -0.311 6.311 17 C 0.120 3.880 18 C -0.554 4.554 19 H 0.084 0.916 20 C -0.145 4.145 21 N -0.538 5.538 22 Si 0.737 3.263 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.109 0.891 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.224 0.776 30 H 0.180 0.820 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.126 17.418 -15.657 26.848 hybrid contribution -0.229 0.102 0.735 0.777 sum 12.896 17.519 -14.922 26.380 Atomic orbital electron populations 1.21014 0.84525 1.05387 1.05778 1.23016 0.95268 0.82529 0.91736 1.82995 1.20734 1.31894 1.75056 1.24168 0.78794 1.01060 0.91668 1.23123 1.03448 0.93146 1.12416 1.17949 0.88345 0.90113 0.76528 1.90853 1.68670 1.35168 1.41058 1.20088 0.92752 0.85891 1.15084 1.86221 1.73621 1.33230 1.26347 1.21961 1.00625 0.91914 0.86422 1.22768 0.77406 0.85647 0.83457 1.90683 1.52582 1.69425 1.25300 1.86549 1.67289 1.35658 1.35938 1.23284 0.95875 0.82173 0.98345 1.22334 0.94035 0.93502 0.91760 1.87907 1.60354 1.46555 1.36329 1.20237 0.94239 0.94627 0.78873 1.21001 1.24740 1.06163 1.03524 0.91573 1.24955 0.97070 0.95765 0.96716 1.69949 1.44019 1.23500 1.16285 0.86375 0.80994 0.80716 0.78265 1.20005 1.21140 1.19997 0.89070 0.87504 0.88109 0.77557 0.82006 0.88139 0.88341 0.90256 0.90161 0.91721 0.93070 0.97571 0.97472 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 9.62 36.01 0.35 -0.28 16 2 C 0.12 0.94 6.97 -35.42 -0.25 0.69 16 3 O -0.20 -1.15 9.73 7.86 0.08 -1.07 16 4 C 0.11 0.43 11.36 29.53 0.34 0.76 16 5 C -0.30 -2.16 10.03 -39.45 -0.40 -2.56 16 6 C 0.38 4.62 6.81 -36.72 -0.25 4.37 16 7 O -0.47 -7.75 17.75 -10.25 -0.18 -7.94 16 8 C -0.09 -1.02 5.72 -39.16 -0.22 -1.24 16 9 O -0.28 -3.78 8.82 -47.85 -0.42 -4.20 16 10 C 0.07 0.82 6.65 36.01 0.24 1.06 16 11 C 0.47 7.31 8.03 36.01 0.29 7.60 16 12 O -0.49 -8.96 16.25 -25.47 -0.41 -9.37 16 13 O -0.34 -5.69 10.19 -42.03 -0.43 -6.12 16 14 C 0.08 1.23 5.85 37.16 0.22 1.45 16 15 C 0.06 1.12 6.33 37.16 0.24 1.35 16 16 O -0.39 -9.39 10.30 -38.80 -0.40 -9.79 16 17 C 0.19 5.28 5.69 36.00 0.20 5.49 16 18 C -0.52 -15.08 9.43 -34.44 -0.32 -15.40 16 19 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 22 Si 0.91 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.09 0.32 8.13 -51.93 -0.42 -0.10 16 27 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 0.56 7.18 -51.93 -0.37 0.18 16 29 H 0.21 -0.20 8.06 -52.49 -0.42 -0.62 16 30 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.10 0.93 7.18 -51.93 -0.37 0.56 16 33 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 34 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -38.42 354.96 -5.32 -43.73 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: -4.94 Total: -6.01 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 0.33 Total: 4.80 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -1.77 Total: -38.49 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.42 -5.32 -43.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923951246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.091 kcal (2) G-P(sol) polarization free energy of solvation -38.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds