Wall clock time and date at job start Fri Apr 10 2020 18:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34018 * 119.56934 * 2 1 4 4 C 1.33776 * 122.05965 * 179.97438 * 3 2 1 5 5 C 1.34850 * 121.03258 * 359.97438 * 4 3 2 6 6 C 1.41730 * 119.01372 * 359.97438 * 5 4 3 7 7 O 1.22173 * 120.92138 * 179.97438 * 6 5 4 8 8 C 1.35108 * 119.57026 * 180.26347 * 2 1 3 9 9 O 1.36094 * 120.56012 * 0.02562 * 8 2 1 10 10 C 1.42894 * 117.00160 * 270.23924 * 9 8 2 11 11 C 1.50700 * 109.47100 * 179.97438 * 10 9 8 12 12 O 1.20822 * 119.99860 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99748 * 180.02562 * 11 10 9 14 14 C 1.45208 * 116.99661 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46703 * 180.02562 * 14 13 11 16 16 O 1.42903 * 109.47115 * 65.00440 * 15 14 13 17 17 C 1.42901 * 113.99826 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.47152 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00274 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00444 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99901 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00338 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47213 * 60.00581 * 22 20 18 24 24 H 1.48500 * 109.46790 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47200 * 300.00414 * 22 20 18 26 26 H 1.08998 * 109.47047 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46925 * 120.00327 * 1 2 3 28 28 H 1.08996 * 109.47355 * 240.00508 * 1 2 3 29 29 H 1.08001 * 119.48790 * 180.02562 * 4 3 2 30 30 H 1.07994 * 120.49152 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47300 * 300.00482 * 10 9 8 32 32 H 1.09004 * 109.46925 * 59.99973 * 10 9 8 33 33 H 1.08999 * 109.46902 * 300.00278 * 14 13 11 34 34 H 1.09000 * 109.46759 * 59.99999 * 14 13 11 35 35 H 1.09002 * 109.46842 * 184.99636 * 15 14 13 36 36 H 1.08992 * 109.47537 * 304.99943 * 15 14 13 37 37 H 1.09002 * 109.46711 * 299.99868 * 17 16 15 38 38 H 1.09004 * 109.47404 * 59.99350 * 17 16 15 39 39 H 0.96993 * 120.00213 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1683 1.1656 0.0000 4 6 3.5048 1.2238 0.0005 5 6 4.2496 0.0996 0.0016 6 6 3.5959 -1.1580 0.0027 7 8 4.2364 -2.1984 0.0032 8 6 2.1737 -1.1751 -0.0054 9 8 1.4960 -2.3552 -0.0114 10 6 1.1677 -2.9213 1.2590 11 6 0.4239 -4.2160 1.0549 12 8 0.1985 -4.6133 -0.0636 13 8 0.0119 -4.9276 2.1159 14 6 -0.6980 -6.1648 1.8442 15 6 -1.0855 -6.8311 3.1659 16 8 -2.0207 -6.0033 3.8604 17 6 -2.4501 -6.5373 5.1144 18 6 -3.4283 -5.5875 5.7563 19 1 -3.6950 -4.6678 5.2568 20 6 -3.9827 -5.8924 6.9813 21 7 -3.6576 -7.0121 7.5898 22 14 -5.1958 -4.7154 7.7766 23 1 -6.3703 -4.5381 6.8855 24 1 -5.6419 -5.2703 9.0798 25 1 -4.5390 -3.4019 7.9971 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 -0.3634 -0.5137 0.8900 29 1 3.9951 2.1861 0.0009 30 1 5.3280 0.1567 0.0015 31 1 2.0831 -3.1120 1.8192 32 1 0.5396 -2.2256 1.8154 33 1 -1.5983 -5.9484 1.2691 34 1 -0.0549 -6.8350 1.2738 35 1 -1.5392 -7.8015 2.9642 36 1 -0.1949 -6.9668 3.7793 37 1 -2.9321 -7.5015 4.9528 38 1 -1.5878 -6.6673 5.7685 39 1 -4.0474 -7.2265 8.4517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923951246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:38 Heat of formation + Delta-G solvation = -219.266837 kcal Electronic energy + Delta-G solvation = -24903.782028 eV Core-core repulsion = 20778.427943 eV Total energy + Delta-G solvation = -4125.354084 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.15575 -41.69638 -40.24567 -39.08012 -38.65037 -37.45295 -34.94699 -34.07712 -33.65295 -31.99068 -30.25201 -29.05574 -28.53873 -25.33028 -24.58775 -23.87395 -23.80442 -22.36622 -20.02535 -19.70683 -18.83675 -18.69822 -18.14022 -18.08144 -17.84651 -17.38208 -17.24490 -16.74131 -16.48086 -16.27301 -15.71365 -15.60285 -15.24598 -15.15869 -14.76958 -14.59874 -14.24453 -14.04426 -13.96635 -13.68185 -13.57906 -13.22858 -13.05081 -12.93092 -12.68819 -12.47374 -12.03019 -11.93023 -11.81362 -11.61686 -11.29892 -10.89212 -10.69721 -10.53520 -10.28171 -9.78323 -8.31659 -6.44272 -0.33632 -0.05540 0.95561 1.02274 1.28823 1.41435 1.46200 1.54651 2.17951 2.35009 2.63768 3.02344 3.03063 3.16170 3.46584 3.51921 3.75808 3.87748 3.88979 3.96464 4.07514 4.11453 4.17434 4.37984 4.47741 4.50724 4.59001 4.62470 4.80161 4.85151 5.01264 5.07885 5.16604 5.24338 5.54311 5.82277 5.94895 6.01578 6.48088 6.55526 6.66693 6.78563 7.27251 8.80380 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.002485 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.345604 B =11266.792696 C =12275.522609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.160 3.840 3 O -0.190 6.190 4 C 0.150 3.850 5 C -0.330 4.330 6 C 0.366 3.634 7 O -0.548 6.548 8 C -0.138 4.138 9 O -0.300 6.300 10 C 0.068 3.932 11 C 0.468 3.532 12 O -0.522 6.522 13 O -0.351 6.351 14 C 0.079 3.921 15 C 0.054 3.946 16 O -0.407 6.407 17 C 0.207 3.793 18 C -0.550 4.550 19 H 0.063 0.937 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.984 3.016 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.264 1.264 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.270 0.730 30 H 0.175 0.825 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.056 0.944 37 H -0.008 1.008 38 H -0.011 1.011 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.417 21.540 -15.159 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 O -0.090 6.090 4 C 0.086 3.914 5 C -0.350 4.350 6 C 0.260 3.740 7 O -0.439 6.439 8 C -0.184 4.184 9 O -0.217 6.217 10 C -0.007 4.007 11 C 0.311 3.689 12 O -0.411 6.411 13 O -0.268 6.268 14 C 0.006 3.994 15 C -0.022 4.022 16 O -0.327 6.327 17 C 0.132 3.868 18 C -0.588 4.588 19 H 0.081 0.919 20 C -0.193 4.193 21 N -0.570 5.570 22 Si 0.807 3.193 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.188 1.188 26 H 0.139 0.861 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.285 0.715 30 H 0.192 0.808 31 H 0.120 0.880 32 H 0.148 0.852 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.010 0.990 38 H 0.007 0.993 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.340 21.049 -15.549 28.932 hybrid contribution 0.033 -0.890 0.630 1.091 sum 12.373 20.158 -14.919 27.965 Atomic orbital electron populations 1.21188 0.82835 1.07356 1.05765 1.23221 0.96178 0.81901 0.87678 1.83112 1.21830 1.30602 1.73502 1.25206 0.77467 1.02214 0.86547 1.23092 1.04471 0.92027 1.15415 1.18663 0.89046 0.91139 0.75157 1.90809 1.69810 1.37428 1.45836 1.20238 0.92701 0.86258 1.19230 1.86195 1.74066 1.34743 1.26707 1.22050 1.00721 0.90951 0.86932 1.23375 0.76685 0.86148 0.82674 1.90658 1.53929 1.70270 1.26252 1.86542 1.67426 1.36048 1.36740 1.23279 0.96492 0.82627 0.97049 1.22638 0.93252 0.94091 0.92269 1.87851 1.61751 1.47910 1.35216 1.19884 0.93164 0.93784 0.79938 1.21359 1.26085 1.06682 1.04660 0.91891 1.25978 0.98759 0.97590 0.96944 1.70060 1.44949 1.25189 1.16776 0.85219 0.78333 0.78412 0.77374 1.18985 1.20114 1.18828 0.86094 0.87728 0.87748 0.71454 0.80766 0.88017 0.85245 0.90384 0.87522 0.89720 0.92533 0.99027 0.99336 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.62 71.24 0.69 -0.31 16 2 C 0.16 2.08 6.97 24.96 0.17 2.26 16 3 O -0.19 -1.33 9.73 5.21 0.05 -1.28 16 4 C 0.15 0.54 11.36 67.04 0.76 1.30 16 5 C -0.33 -4.30 10.03 22.35 0.22 -4.08 16 6 C 0.37 9.24 6.81 24.13 0.16 9.40 16 7 O -0.55 -19.72 17.75 8.47 0.15 -19.57 16 8 C -0.14 -3.09 5.72 22.54 0.13 -2.96 16 9 O -0.30 -8.46 8.82 -68.02 -0.60 -9.06 16 10 C 0.07 1.74 6.65 71.24 0.47 2.21 16 11 C 0.47 15.00 8.03 71.24 0.57 15.58 16 12 O -0.52 -19.48 16.25 28.41 0.46 -19.02 16 13 O -0.35 -11.94 10.19 -48.78 -0.50 -12.44 16 14 C 0.08 2.52 5.85 71.98 0.42 2.94 16 15 C 0.05 1.99 6.33 71.98 0.46 2.44 16 16 O -0.41 -19.84 10.30 -145.57 -1.50 -21.34 16 17 C 0.21 11.54 5.69 71.23 0.41 11.95 16 18 C -0.55 -32.51 9.43 25.60 0.24 -32.27 16 19 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 20 C 0.01 0.33 5.46 84.65 0.46 0.80 16 21 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 22 Si 0.98 43.61 29.54 68.60 2.03 45.64 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 26 H 0.12 0.34 8.13 -2.39 -0.02 0.32 16 27 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 0.91 7.18 -2.39 -0.02 0.89 16 29 H 0.27 -2.37 8.06 -2.91 -0.02 -2.39 16 30 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.13 2.36 7.18 -2.38 -0.02 2.35 16 33 H 0.08 2.52 8.13 -2.39 -0.02 2.50 16 34 H 0.11 2.86 8.13 -2.39 -0.02 2.84 16 35 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 39 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -88.47 354.96 6.62 -81.85 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: 1.07 Total: 1.18 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.17 Total: 9.26 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.28 Total: -55.21 kcal Atomic # 8 Polarization: -80.78 SS G_CDS: -1.93 Total: -82.71 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -88.47 6.62 -81.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923951246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.420 kcal (2) G-P(sol) polarization free energy of solvation -88.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds