Wall clock time and date at job start Fri Apr 10 2020 18:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.91940 * 2 1 4 4 C 1.54918 * 111.00284 * 236.10352 * 2 1 3 5 5 N 1.47425 * 104.82827 * 204.91696 * 4 2 1 6 6 C 1.34781 * 125.64420 * 204.16865 * 5 4 2 7 7 O 1.21614 * 119.99724 * 359.97379 * 6 5 4 8 8 C 1.47376 * 120.00084 * 179.97438 * 6 5 4 9 9 C 1.38074 * 126.42333 * 0.02562 * 8 6 5 10 10 N 1.34236 * 107.43978 * 179.97438 * 9 8 6 11 11 C 1.46500 * 125.73735 * 180.02562 * 10 9 8 12 12 N 1.39935 * 108.52036 * 359.97438 * 10 9 8 13 13 C 1.30524 * 108.89542 * 359.75706 * 12 10 9 14 14 Cl 1.73600 * 126.00688 * 180.25994 * 13 12 10 15 15 C 1.47015 * 108.70882 * 24.12597 * 5 4 2 16 16 C 1.54325 * 107.27065 * 358.94051 * 15 5 4 17 17 H 1.08993 * 110.72326 * 96.17079 * 16 15 5 18 18 N 1.46501 * 110.87209 * 219.37767 * 16 15 5 19 19 C 1.36944 * 119.99454 * 268.60541 * 18 16 15 20 20 H 1.07997 * 120.00089 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99535 * 179.97438 * 19 18 16 22 22 N 1.31621 * 120.00268 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99890 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47289 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47168 * 120.00257 * 23 21 19 26 26 H 1.48491 * 109.47458 * 240.00494 * 23 21 19 27 27 H 1.08999 * 109.46952 * 296.09720 * 1 2 3 28 28 H 1.08996 * 109.47229 * 56.09549 * 1 2 3 29 29 H 1.09000 * 109.47156 * 176.09970 * 1 2 3 30 30 H 1.08999 * 110.35942 * 323.74888 * 4 2 1 31 31 H 1.08996 * 110.36556 * 86.07721 * 4 2 1 32 32 H 1.07999 * 126.27740 * 359.94079 * 9 8 6 33 33 H 1.08996 * 109.46849 * 89.99761 * 11 10 9 34 34 H 1.09001 * 109.46550 * 209.99828 * 11 10 9 35 35 H 1.08994 * 109.47037 * 329.99495 * 11 10 9 36 36 H 1.09000 * 109.88350 * 239.52260 * 15 5 4 37 37 H 1.08997 * 110.01690 * 118.42776 * 15 5 4 38 38 H 0.96997 * 120.00407 * 88.61403 * 18 16 15 39 39 H 0.96993 * 119.99849 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4271 -1.2430 -0.7735 6 6 4.4481 -1.5601 -1.5942 7 8 4.3010 -1.4976 -2.7998 8 6 5.7426 -1.9826 -1.0307 9 6 6.0543 -2.1001 0.3092 10 7 7.3297 -2.5107 0.3911 11 6 8.0689 -2.7648 1.6302 12 7 7.8340 -2.6563 -0.9061 13 6 6.8964 -2.3500 -1.7609 14 17 7.0415 -2.3837 -3.4905 15 6 3.4675 -1.2742 0.6958 16 6 2.0862 -0.8080 1.2021 17 1 1.4468 -1.6632 1.4208 18 7 2.2248 0.0485 2.3826 19 6 2.1954 -0.5028 3.6357 20 1 2.0705 -1.5690 3.7538 21 6 2.3273 0.3087 4.7542 22 7 2.4801 1.6080 4.6103 23 14 2.2865 -0.4432 6.4637 24 1 2.1051 -1.9131 6.3538 25 1 3.5644 -0.1536 7.1625 26 1 1.1583 0.1389 7.2338 27 1 -0.3633 0.4521 0.9229 28 1 -0.3633 0.5732 -0.8529 29 1 -0.3633 -1.0253 -0.0699 30 1 1.4518 -1.6703 -1.4025 31 1 2.1559 -0.1719 -2.0837 32 1 5.3933 -1.8982 1.1392 33 1 7.9381 -3.8062 1.9242 34 1 9.1279 -2.5629 1.4692 35 1 7.6908 -2.1143 2.4187 36 1 4.2427 -0.5998 1.0597 37 1 3.6662 -2.2884 1.0422 38 1 2.3373 1.0061 2.2765 39 1 2.5719 2.1750 5.3919 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939512454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:43 Heat of formation + Delta-G solvation = 43.166368 kcal Electronic energy + Delta-G solvation = -23893.671959 eV Core-core repulsion = 20284.992499 eV Total energy + Delta-G solvation = -3608.679460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.64325 -40.76163 -38.75460 -37.84158 -35.79797 -34.29685 -34.02189 -32.58537 -31.53186 -29.18929 -28.19259 -27.16065 -25.90407 -24.00769 -22.52798 -22.25749 -21.29443 -20.78324 -19.03855 -18.14527 -17.65756 -17.24127 -16.83861 -16.61241 -16.22444 -15.93087 -15.44597 -15.31012 -15.01711 -14.57850 -14.36627 -14.10929 -13.98787 -13.66419 -13.52339 -13.28333 -12.91875 -12.83608 -12.80916 -12.69329 -12.67470 -12.10907 -12.04908 -11.97380 -11.93221 -11.62863 -11.38196 -10.97372 -10.85308 -10.57169 -9.97229 -9.53823 -9.00172 -7.88638 -5.18141 0.31943 0.32562 0.70484 1.53432 1.56547 1.61446 1.64322 2.07993 2.28975 2.61775 3.27151 3.43230 3.50332 3.74925 3.87837 3.92918 4.03346 4.10735 4.29080 4.36111 4.39609 4.40840 4.53884 4.63874 4.67998 4.71860 4.80032 4.89760 4.95009 5.16049 5.16996 5.32766 5.38584 5.54937 5.62913 5.63765 6.11442 6.31515 6.53643 7.18441 7.40142 8.11629 8.35737 9.34365 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.004340 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.609885 B = 6449.527351 C = 8204.892484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.609 5.609 6 C 0.601 3.399 7 O -0.570 6.570 8 C -0.300 4.300 9 C 0.121 3.879 10 N -0.340 5.340 11 C 0.082 3.918 12 N -0.303 5.303 13 C 0.157 3.843 14 Cl 0.024 6.976 15 C 0.074 3.926 16 C 0.172 3.828 17 H 0.076 0.924 18 N -0.720 5.720 19 C -0.235 4.235 20 H 0.085 0.915 21 C -0.067 4.067 22 N -0.967 5.967 23 Si 0.963 3.037 24 H -0.262 1.262 25 H -0.297 1.297 26 H -0.303 1.303 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.223 0.777 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.375 0.625 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.160 -9.156 -7.403 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.126 4.126 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.342 5.342 6 C 0.391 3.609 7 O -0.451 6.451 8 C -0.316 4.316 9 C -0.032 4.032 10 N -0.119 5.119 11 C -0.056 4.056 12 N -0.128 5.128 13 C -0.036 4.036 14 Cl 0.052 6.948 15 C -0.052 4.052 16 C 0.062 3.938 17 H 0.094 0.906 18 N -0.359 5.359 19 C -0.367 4.367 20 H 0.103 0.897 21 C -0.259 4.259 22 N -0.618 5.618 23 Si 0.794 3.206 24 H -0.186 1.186 25 H -0.224 1.224 26 H -0.231 1.231 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.239 0.761 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.138 0.862 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.207 0.793 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.442 -9.710 -7.794 14.505 hybrid contribution -0.560 0.665 0.753 1.150 sum 6.882 -9.045 -7.041 13.369 Atomic orbital electron populations 1.21554 0.92484 1.02632 1.01840 1.22567 0.97415 0.98833 0.93778 0.91180 1.22300 0.82028 0.98580 0.97331 1.48247 1.12255 1.66192 1.07456 1.16934 0.82125 0.76699 0.85113 1.90751 1.83330 1.56209 1.14819 1.20090 0.96512 1.22265 0.92726 1.24341 0.87162 0.93313 0.98363 1.48673 1.09408 1.48051 1.05811 1.22609 0.98495 1.05324 0.79196 1.77114 1.21437 1.26154 0.88143 1.22724 0.92173 1.00011 0.88657 1.98398 1.97923 1.96740 1.01706 1.23343 1.02082 1.01422 0.78315 1.21422 0.92400 0.93805 0.86189 0.90590 1.42499 1.86452 1.06124 1.00779 1.19680 1.39958 0.92986 0.84043 0.89707 1.25430 1.03663 0.95731 1.01122 1.69813 1.58551 1.04158 1.29249 0.85224 0.76265 0.78303 0.80834 1.18603 1.22421 1.23102 0.93407 0.91300 0.91383 0.89949 0.90929 0.76095 0.87681 0.87544 0.86202 0.91424 0.90145 0.79274 0.94227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.31 71.98 0.67 -2.50 16 2 C -0.11 -2.99 3.27 -9.40 -0.03 -3.03 16 3 H 0.07 2.19 8.01 -2.39 -0.02 2.18 16 4 C 0.12 3.25 6.38 86.86 0.55 3.80 16 5 N -0.61 -18.14 3.33 -815.71 -2.71 -20.86 16 6 C 0.60 20.09 7.84 86.65 0.68 20.77 16 7 O -0.57 -21.91 15.97 -4.07 -0.07 -21.97 16 8 C -0.30 -9.13 6.10 -20.13 -0.12 -9.25 16 9 C 0.12 2.94 9.97 84.29 0.84 3.78 16 10 N -0.34 -7.60 3.98 -367.78 -1.46 -9.06 16 11 C 0.08 0.97 11.44 127.77 1.46 2.43 16 12 N -0.30 -8.55 12.50 -48.95 -0.61 -9.16 16 13 C 0.16 4.83 7.88 85.66 0.67 5.50 16 14 Cl 0.02 0.72 28.00 -2.72 -0.08 0.65 16 15 C 0.07 2.11 4.74 86.73 0.41 2.52 16 16 C 0.17 5.54 3.08 46.18 0.14 5.68 16 17 H 0.08 2.39 7.99 -2.39 -0.02 2.38 16 18 N -0.72 -30.41 5.16 -317.33 -1.64 -32.04 16 19 C -0.24 -11.05 9.96 84.03 0.84 -10.21 16 20 H 0.09 3.74 7.83 -2.91 -0.02 3.72 16 21 C -0.07 -3.40 5.50 84.86 0.47 -2.93 16 22 N -0.97 -53.99 13.06 21.65 0.28 -53.71 16 23 Si 0.96 41.30 29.55 68.60 2.03 43.32 16 24 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 25 H -0.30 -12.85 7.11 99.48 0.71 -12.15 16 26 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.49 8.07 -2.39 -0.02 1.47 16 30 H 0.08 1.99 7.98 -2.39 -0.02 1.98 16 31 H 0.07 2.02 8.04 -2.39 -0.02 2.00 16 32 H 0.22 4.63 4.42 -2.91 -0.01 4.62 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 2.07 6.74 -2.39 -0.02 2.05 16 37 H 0.08 2.00 7.01 -2.39 -0.02 1.99 16 38 H 0.37 17.73 7.76 -92.71 -0.72 17.01 16 39 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -65.50 341.19 2.70 -62.81 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.37 Total: 23.46 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 6.58 Total: 16.56 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -6.14 Total: -124.83 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.07 Total: -21.97 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.65 kcal Total: -65.50 2.70 -62.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939512454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.972 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds