Wall clock time and date at job start Fri Apr 10 2020 18:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31237 * 124.05721 * 2 1 4 4 N 1.27340 * 120.03990 * 180.02562 * 3 2 1 5 5 S 1.56634 * 109.73619 * 359.70144 * 4 3 2 6 6 C 1.38247 * 124.05557 * 180.02562 * 2 1 3 7 7 C 1.47169 * 128.47483 * 359.97222 * 6 2 1 8 8 O 1.21619 * 120.00108 * 0.02562 * 7 6 2 9 9 N 1.34781 * 120.00001 * 179.97438 * 7 6 2 10 10 C 1.46500 * 119.99697 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46719 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.64028 * 303.31454 * 11 10 9 13 13 C 1.54324 * 110.71890 * 66.45585 * 11 10 9 14 14 N 1.47020 * 107.39983 * 140.47837 * 13 11 10 15 15 C 1.36946 * 125.64749 * 181.10549 * 14 13 11 16 16 H 1.08000 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99867 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99829 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47348 * 59.99174 * 19 17 15 21 21 H 1.48492 * 109.47116 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46964 * 299.99484 * 19 17 15 23 23 C 1.47743 * 108.53125 * 1.18235 * 14 13 11 24 24 C 1.54909 * 104.83995 * 335.74644 * 23 14 13 25 25 H 1.09001 * 111.03628 * 155.18095 * 24 23 14 26 26 O 1.42891 * 111.00999 * 279.02161 * 24 23 14 27 27 H 1.08997 * 109.46932 * 269.97360 * 1 2 3 28 28 H 1.08997 * 109.46904 * 29.97289 * 1 2 3 29 29 H 1.08997 * 109.47020 * 149.97621 * 1 2 3 30 30 H 0.97000 * 119.99671 * 0.02562 * 9 7 6 31 31 H 1.08996 * 109.47222 * 60.01303 * 10 9 7 32 32 H 1.08997 * 109.47438 * 300.00126 * 10 9 7 33 33 H 1.09002 * 109.88322 * 259.97367 * 13 11 10 34 34 H 1.09000 * 109.88025 * 20.98532 * 13 11 10 35 35 H 0.96998 * 119.99524 * 180.02562 * 18 17 15 36 36 H 1.09003 * 110.29227 * 216.94505 * 23 14 13 37 37 H 1.08996 * 110.53057 * 94.67717 * 23 14 13 38 38 H 0.96705 * 114.00245 * 292.19608 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5123 0.9981 -0.0005 5 16 3.9366 -0.5097 0.0067 6 6 2.2812 -1.1454 -0.0005 7 6 1.8394 -2.5492 -0.0006 8 8 0.6522 -2.8131 -0.0006 9 7 2.7505 -3.5424 -0.0016 10 6 2.3107 -4.9398 -0.0023 11 6 3.5336 -5.8593 -0.0028 12 1 4.1773 -5.6421 -0.8551 13 6 4.3166 -5.7272 1.3205 14 7 4.7649 -7.0743 1.7024 15 6 5.4753 -7.3892 2.8300 16 1 5.7529 -6.6130 3.5278 17 6 5.8397 -8.7060 3.0756 18 7 5.5019 -9.6519 2.2250 19 14 6.8094 -9.1354 4.6134 20 1 6.0278 -8.7491 5.8155 21 1 7.0705 -10.5969 4.6418 22 1 8.1004 -8.4015 4.6055 23 6 4.3217 -8.0284 0.6651 24 6 3.1002 -7.3492 -0.0029 25 1 2.9570 -7.7143 -1.0199 26 8 1.9183 -7.5388 0.7775 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 3.6974 -3.3319 -0.0020 31 1 1.7112 -5.1316 -0.8922 32 1 1.7119 -5.1327 0.8878 33 1 5.1790 -5.0761 1.1775 34 1 3.6682 -5.3186 2.0956 35 1 5.7561 -10.5720 2.3969 36 1 4.0276 -8.9735 1.1216 37 1 5.1125 -8.1916 -0.0671 38 1 1.6091 -8.4546 0.8071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957862975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:51 Heat of formation + Delta-G solvation = 16.897677 kcal Electronic energy + Delta-G solvation = -23421.709352 eV Core-core repulsion = 19813.934503 eV Total energy + Delta-G solvation = -3607.774849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21971 -39.72965 -38.28903 -35.10488 -34.60444 -33.52866 -32.29770 -30.15502 -28.66839 -27.65112 -27.18480 -25.56741 -23.87659 -22.33584 -20.84095 -20.23230 -19.64441 -18.74190 -17.68199 -17.37049 -16.43968 -16.29381 -15.89810 -15.16667 -14.89448 -14.60582 -14.28194 -14.18918 -13.87736 -13.41194 -13.29755 -13.20653 -12.77647 -12.66712 -12.43296 -12.04339 -11.80138 -11.47075 -11.29788 -10.83888 -10.74960 -10.61893 -10.45247 -10.39020 -10.14609 -10.11547 -9.99945 -9.95152 -9.86878 -9.19216 -9.13392 -8.73102 -6.90185 -5.74095 -3.14099 -0.53646 0.54059 1.19315 1.67412 2.78738 2.85545 3.36411 3.40980 3.41788 3.61388 4.29253 4.40416 4.49397 4.66993 4.99722 5.05237 5.21319 5.30789 5.34300 5.44948 5.45999 5.52487 5.80231 5.86000 5.93982 6.03286 6.22556 6.25898 6.35198 6.52925 6.76113 7.18910 7.22311 7.38662 7.51549 7.69587 7.88882 8.17051 8.30904 9.12915 9.74614 10.38362 11.31107 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.003179 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.224900 B = 8805.669439 C = 9678.866544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.100 3.900 3 N -0.252 5.252 4 N -0.255 5.255 5 S 0.420 5.580 6 C -0.291 4.291 7 C 0.600 3.400 8 O -0.515 6.515 9 N -0.716 5.716 10 C 0.140 3.860 11 C -0.108 4.108 12 H 0.087 0.913 13 C 0.143 3.857 14 N -0.597 5.597 15 C -0.221 4.221 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.925 5.925 19 Si 0.916 3.084 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.126 3.874 24 C 0.084 3.916 25 H 0.056 0.944 26 O -0.558 6.558 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.399 0.601 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.019 0.981 34 H 0.028 0.972 35 H 0.253 0.747 36 H 0.112 0.888 37 H 0.020 0.980 38 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 13.530 -8.175 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 N -0.118 5.118 4 N -0.236 5.236 5 S 0.556 5.444 6 C -0.432 4.432 7 C 0.383 3.617 8 O -0.392 6.392 9 N -0.367 5.367 10 C 0.018 3.982 11 C -0.128 4.128 12 H 0.106 0.894 13 C 0.017 3.983 14 N -0.323 5.323 15 C -0.349 4.349 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.574 5.574 19 Si 0.746 3.254 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.000 4.000 24 C 0.023 3.977 25 H 0.074 0.926 26 O -0.363 6.363 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.233 0.767 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.130 0.870 37 H 0.038 0.962 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.373 14.903 -7.968 17.733 hybrid contribution -0.075 -1.271 0.683 1.445 sum -5.448 13.632 -7.285 16.388 Atomic orbital electron populations 1.20538 0.83714 1.04973 1.04476 1.22971 1.00258 0.85020 0.96477 1.70624 0.96943 1.28013 1.16238 1.78866 1.09446 1.15765 1.19475 1.82663 1.09733 1.01375 1.50593 1.27841 0.98116 1.00194 1.17018 1.16405 0.86054 0.81836 0.77431 1.90817 1.15721 1.82993 1.49638 1.46026 1.09283 1.07103 1.74249 1.21374 0.96746 0.76653 1.03467 1.22538 0.95874 0.94458 0.99887 0.89444 1.21320 0.94855 0.89575 0.92586 1.44386 1.64006 1.00811 1.23060 1.19032 1.25880 0.92841 0.97136 0.90499 1.24758 1.01315 0.95653 0.98871 1.69725 1.51174 1.00267 1.36258 0.86132 0.79673 0.77173 0.82404 1.21124 1.21557 1.21205 1.22639 0.90944 0.96153 0.90234 1.23177 0.87458 0.94025 0.93052 0.92649 1.86379 1.43263 1.32440 1.74250 0.89245 0.89922 0.87967 0.76674 0.91159 0.89478 0.96323 0.95374 0.93654 0.87048 0.96201 0.77684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.90 36.01 0.36 -0.35 16 2 C 0.10 1.13 7.00 -82.84 -0.58 0.56 16 3 N -0.25 -3.11 11.54 33.42 0.39 -2.73 16 4 N -0.25 -3.02 12.51 60.35 0.75 -2.27 16 5 S 0.42 3.94 23.04 -107.50 -2.48 1.46 16 6 C -0.29 -3.28 6.80 -35.95 -0.24 -3.53 16 7 C 0.60 7.75 7.80 -12.63 -0.10 7.65 16 8 O -0.52 -7.96 14.89 5.26 0.08 -7.88 16 9 N -0.72 -8.67 5.40 -61.47 -0.33 -9.00 16 10 C 0.14 1.97 4.59 -4.04 -0.02 1.96 16 11 C -0.11 -1.68 2.95 -88.78 -0.26 -1.94 16 12 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 13 C 0.14 2.76 6.52 -3.06 -0.02 2.74 16 14 N -0.60 -14.53 3.41 -169.81 -0.58 -15.10 16 15 C -0.22 -5.97 10.28 -15.05 -0.15 -6.12 16 16 H 0.08 2.02 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 18 N -0.93 -25.88 10.11 55.49 0.56 -25.32 16 19 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.13 2.81 5.65 -2.35 -0.01 2.79 16 24 C 0.08 1.43 4.17 -24.58 -0.10 1.33 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 O -0.56 -9.63 12.22 -35.23 -0.43 -10.06 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.10 1.02 6.47 -51.93 -0.34 0.68 16 30 H 0.40 4.05 7.76 -40.82 -0.32 3.73 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.45 7.44 -51.93 -0.39 1.07 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.03 0.57 7.76 -51.93 -0.40 0.17 16 35 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.11 2.82 5.89 -51.93 -0.31 2.51 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.38 5.27 9.12 45.56 0.42 5.69 16 LS Contribution 332.68 15.07 5.01 5.01 Total: -1.00 -32.28 332.68 -7.12 -39.39 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.84 Total: 5.25 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.23 Total: 4.69 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.79 Total: -54.42 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.35 Total: -17.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.48 Total: 1.46 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.28 -7.12 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957862975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.292 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds