Wall clock time and date at job start Fri Apr 10 2020 18:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31237 * 124.05721 * 2 1 4 4 N 1.27340 * 120.03990 * 180.02562 * 3 2 1 5 5 S 1.56634 * 109.73619 * 359.70144 * 4 3 2 6 6 C 1.38247 * 124.05557 * 180.02562 * 2 1 3 7 7 C 1.47169 * 128.47483 * 359.97222 * 6 2 1 8 8 O 1.21619 * 120.00108 * 0.02562 * 7 6 2 9 9 N 1.34781 * 120.00001 * 179.97438 * 7 6 2 10 10 C 1.46500 * 119.99697 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46719 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.64028 * 303.31454 * 11 10 9 13 13 C 1.54324 * 110.71890 * 66.45585 * 11 10 9 14 14 N 1.47020 * 107.39983 * 140.47837 * 13 11 10 15 15 C 1.36946 * 125.64749 * 181.10549 * 14 13 11 16 16 H 1.08000 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99867 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99829 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47348 * 59.99174 * 19 17 15 21 21 H 1.48492 * 109.47116 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46964 * 299.99484 * 19 17 15 23 23 C 1.47743 * 108.53125 * 1.18235 * 14 13 11 24 24 C 1.54909 * 104.83995 * 335.74644 * 23 14 13 25 25 H 1.09001 * 111.03628 * 155.18095 * 24 23 14 26 26 O 1.42891 * 111.00999 * 279.02161 * 24 23 14 27 27 H 1.08997 * 109.46932 * 269.97360 * 1 2 3 28 28 H 1.08997 * 109.46904 * 29.97289 * 1 2 3 29 29 H 1.08997 * 109.47020 * 149.97621 * 1 2 3 30 30 H 0.97000 * 119.99671 * 0.02562 * 9 7 6 31 31 H 1.08996 * 109.47222 * 60.01303 * 10 9 7 32 32 H 1.08997 * 109.47438 * 300.00126 * 10 9 7 33 33 H 1.09002 * 109.88322 * 259.97367 * 13 11 10 34 34 H 1.09000 * 109.88025 * 20.98532 * 13 11 10 35 35 H 0.96998 * 119.99524 * 180.02562 * 18 17 15 36 36 H 1.09003 * 110.29227 * 216.94505 * 23 14 13 37 37 H 1.08996 * 110.53057 * 94.67717 * 23 14 13 38 38 H 0.96705 * 114.00245 * 292.19608 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5123 0.9981 -0.0005 5 16 3.9366 -0.5097 0.0067 6 6 2.2812 -1.1454 -0.0005 7 6 1.8394 -2.5492 -0.0006 8 8 0.6522 -2.8131 -0.0006 9 7 2.7505 -3.5424 -0.0016 10 6 2.3107 -4.9398 -0.0023 11 6 3.5336 -5.8593 -0.0028 12 1 4.1773 -5.6421 -0.8551 13 6 4.3166 -5.7272 1.3205 14 7 4.7649 -7.0743 1.7024 15 6 5.4753 -7.3892 2.8300 16 1 5.7529 -6.6130 3.5278 17 6 5.8397 -8.7060 3.0756 18 7 5.5019 -9.6519 2.2250 19 14 6.8094 -9.1354 4.6134 20 1 6.0278 -8.7491 5.8155 21 1 7.0705 -10.5969 4.6418 22 1 8.1004 -8.4015 4.6055 23 6 4.3217 -8.0284 0.6651 24 6 3.1002 -7.3492 -0.0029 25 1 2.9570 -7.7143 -1.0199 26 8 1.9183 -7.5388 0.7775 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 3.6974 -3.3319 -0.0020 31 1 1.7112 -5.1316 -0.8922 32 1 1.7119 -5.1327 0.8878 33 1 5.1790 -5.0761 1.1775 34 1 3.6682 -5.3186 2.0956 35 1 5.7561 -10.5720 2.3969 36 1 4.0276 -8.9735 1.1216 37 1 5.1125 -8.1916 -0.0671 38 1 1.6091 -8.4546 0.8071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957862975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:50 Heat of formation + Delta-G solvation = -8.881926 kcal Electronic energy + Delta-G solvation = -23422.827240 eV Core-core repulsion = 19813.934503 eV Total energy + Delta-G solvation = -3608.892737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.08870 -40.81898 -39.69766 -36.31716 -36.17460 -34.37959 -33.97510 -31.64622 -29.89374 -29.02541 -28.03954 -27.16812 -25.34133 -23.40157 -22.21015 -21.56000 -20.92696 -19.57557 -19.10104 -18.71050 -17.87857 -17.24299 -16.97168 -16.77982 -16.27071 -15.78664 -15.63907 -15.50036 -15.11027 -14.68291 -14.39706 -14.11492 -13.96156 -13.90626 -13.66010 -13.48984 -13.14554 -13.00882 -12.61301 -12.57381 -12.35484 -12.02053 -11.84419 -11.81194 -11.67979 -11.44633 -11.12641 -10.97882 -10.81068 -10.78077 -10.63019 -10.20416 -8.82823 -7.77137 -5.18548 -1.39926 -0.27577 0.36699 0.79871 1.47734 1.49799 1.55878 1.80162 1.86049 2.50461 2.78684 3.30157 3.37195 3.45439 3.59837 3.63910 3.92804 3.97710 4.03588 4.23640 4.46581 4.62173 4.67013 4.68048 4.77174 4.86235 4.93216 5.03067 5.14568 5.25865 5.37426 5.42743 5.53453 5.80370 6.24007 6.31580 6.53523 6.90867 7.00136 7.13164 7.80466 8.43171 9.24983 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.003179 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.224900 B = 8805.669439 C = 9678.866544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.098 3.902 3 N -0.273 5.273 4 N -0.281 5.281 5 S 0.496 5.504 6 C -0.312 4.312 7 C 0.604 3.396 8 O -0.543 6.543 9 N -0.708 5.708 10 C 0.155 3.845 11 C -0.094 4.094 12 H 0.118 0.882 13 C 0.138 3.862 14 N -0.621 5.621 15 C -0.236 4.236 16 H 0.077 0.923 17 C -0.064 4.064 18 N -0.947 5.947 19 Si 0.975 3.025 20 H -0.282 1.282 21 H -0.294 1.294 22 H -0.278 1.278 23 C 0.125 3.875 24 C 0.095 3.905 25 H 0.092 0.908 26 O -0.569 6.569 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.410 0.590 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.034 0.966 34 H 0.015 0.985 35 H 0.247 0.753 36 H 0.078 0.922 37 H 0.003 0.997 38 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.083 14.657 -8.899 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.050 4.050 3 N -0.138 5.138 4 N -0.262 5.262 5 S 0.632 5.368 6 C -0.453 4.453 7 C 0.388 3.612 8 O -0.422 6.422 9 N -0.360 5.360 10 C 0.032 3.968 11 C -0.113 4.113 12 H 0.136 0.864 13 C 0.013 3.987 14 N -0.347 5.347 15 C -0.366 4.366 16 H 0.095 0.905 17 C -0.257 4.257 18 N -0.597 5.597 19 Si 0.804 3.196 20 H -0.208 1.208 21 H -0.220 1.220 22 H -0.204 1.204 23 C 0.000 4.000 24 C 0.034 3.966 25 H 0.109 0.891 26 O -0.377 6.377 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.246 0.754 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.033 0.967 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.020 0.980 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.122 16.066 -8.702 18.976 hybrid contribution -0.098 -1.615 0.927 1.864 sum -5.220 14.451 -7.775 17.220 Atomic orbital electron populations 1.20589 0.82666 1.05343 1.04995 1.23278 1.01121 0.84865 0.95710 1.70686 0.97117 1.28572 1.17423 1.78655 1.09615 1.17785 1.20140 1.82345 1.07383 0.99156 1.47941 1.27716 0.99754 0.99376 1.18418 1.16498 0.85639 0.82376 0.76672 1.90806 1.16917 1.83556 1.50898 1.45867 1.09852 1.06287 1.74003 1.21071 0.95691 0.77290 1.02795 1.22499 0.96203 0.93777 0.98788 0.86420 1.21486 0.95507 0.87506 0.94195 1.44692 1.63883 1.03265 1.22823 1.19374 1.25907 0.93062 0.98210 0.90511 1.25516 1.02781 0.95761 1.01603 1.69973 1.52099 1.00041 1.37542 0.85198 0.78600 0.76473 0.79335 1.20797 1.21964 1.20439 1.22507 0.92622 0.95339 0.89576 1.23074 0.85107 0.94485 0.93899 0.89079 1.86365 1.42923 1.33748 1.74616 0.88585 0.88297 0.88766 0.75391 0.89914 0.92141 0.94781 0.96664 0.94372 0.90440 0.97954 0.76259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 9.90 71.24 0.71 -0.61 16 2 C 0.10 2.10 7.00 42.65 0.30 2.40 16 3 N -0.27 -6.39 11.54 -48.18 -0.56 -6.94 16 4 N -0.28 -6.19 12.51 37.02 0.46 -5.72 16 5 S 0.50 8.12 23.04 -56.49 -1.30 6.82 16 6 C -0.31 -6.49 6.80 24.62 0.17 -6.33 16 7 C 0.60 14.59 7.80 86.59 0.68 15.26 16 8 O -0.54 -16.20 14.89 -4.09 -0.06 -16.26 16 9 N -0.71 -15.49 5.40 -466.63 -2.52 -18.01 16 10 C 0.15 4.01 4.59 86.38 0.40 4.40 16 11 C -0.09 -2.66 2.95 -9.60 -0.03 -2.69 16 12 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 13 C 0.14 5.15 6.52 86.73 0.57 5.72 16 14 N -0.62 -30.16 3.41 -691.17 -2.35 -32.51 16 15 C -0.24 -12.86 10.28 84.03 0.86 -11.99 16 16 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 17 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 18 N -0.95 -54.01 10.11 21.65 0.22 -53.79 16 19 Si 0.98 44.62 29.55 68.60 2.03 46.65 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 C 0.12 5.58 5.65 86.79 0.49 6.07 16 24 C 0.09 3.07 4.17 31.99 0.13 3.20 16 25 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 26 O -0.57 -18.96 12.22 -148.98 -1.82 -20.78 16 27 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.81 6.47 -2.39 -0.02 1.79 16 30 H 0.41 7.09 7.76 -92.71 -0.72 6.37 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 1.94 7.44 -2.39 -0.02 1.92 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.02 0.61 7.76 -2.39 -0.02 0.59 16 35 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 36 H 0.08 4.01 5.89 -2.39 -0.01 4.00 16 37 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.39 10.57 9.12 -74.05 -0.68 9.89 16 Total: -1.00 -70.33 332.68 -1.44 -71.77 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.27 Total: 16.39 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 4.73 Total: 12.39 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -4.75 Total: -116.98 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -1.88 Total: -37.04 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 8.12 SS G_CDS: -1.30 Total: 6.82 kcal Total: -70.33 -1.44 -71.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957862975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.886 kcal (2) G-P(sol) polarization free energy of solvation -70.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds