Wall clock time and date at job start Fri Apr 10 2020 18:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31240 * 124.04991 * 2 1 4 4 N 1.27344 * 120.03414 * 179.97438 * 3 2 1 5 5 S 1.56637 * 109.74066 * 359.97438 * 4 3 2 6 6 C 1.38244 * 124.05883 * 179.97438 * 2 1 3 7 7 C 1.47171 * 128.47521 * 0.02562 * 6 2 1 8 8 O 1.21627 * 119.99658 * 359.97438 * 7 6 2 9 9 N 1.34780 * 120.00125 * 179.97438 * 7 6 2 10 10 C 1.46492 * 119.99843 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46999 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.64079 * 56.68760 * 11 10 9 13 13 C 1.54322 * 110.72214 * 293.54675 * 11 10 9 14 14 N 1.47026 * 107.27431 * 219.44332 * 13 11 10 15 15 C 1.36931 * 125.64830 * 178.90259 * 14 13 11 16 16 H 1.08001 * 120.00343 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00004 * 180.02562 * 15 14 13 18 18 N 1.31618 * 119.99465 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00019 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47740 * 59.99497 * 19 17 15 21 21 H 1.48508 * 109.47102 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47007 * 299.99144 * 19 17 15 23 23 C 1.47424 * 108.69898 * 358.93761 * 14 13 11 24 24 C 1.54905 * 104.83400 * 24.13162 * 23 14 13 25 25 H 1.08998 * 111.01071 * 81.06155 * 24 23 14 26 26 O 1.42904 * 111.00315 * 204.91457 * 24 23 14 27 27 H 1.09005 * 109.46754 * 90.03073 * 1 2 3 28 28 H 1.09004 * 109.47160 * 210.02173 * 1 2 3 29 29 H 1.09000 * 109.47637 * 330.02971 * 1 2 3 30 30 H 0.96994 * 119.99382 * 0.02562 * 9 7 6 31 31 H 1.08999 * 109.47343 * 300.00026 * 10 9 7 32 32 H 1.09000 * 109.47455 * 59.99838 * 10 9 7 33 33 H 1.09000 * 109.88067 * 338.86241 * 13 11 10 34 34 H 1.08993 * 109.88687 * 100.02074 * 13 11 10 35 35 H 0.97009 * 119.99243 * 180.02562 * 18 17 15 36 36 H 1.09004 * 110.36322 * 142.96507 * 23 14 13 37 37 H 1.08997 * 110.36707 * 265.17471 * 23 14 13 38 38 H 0.96697 * 114.00203 * 292.19440 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0874 0.0000 4 7 3.5122 0.9982 0.0005 5 16 3.9367 -0.5095 0.0017 6 6 2.2812 -1.1453 0.0005 7 6 1.8395 -2.5492 0.0006 8 8 0.6522 -2.8130 0.0007 9 7 2.7507 -3.5423 0.0006 10 6 2.3109 -4.9397 0.0002 11 6 3.5338 -5.8592 0.0009 12 1 4.1770 -5.6424 0.8539 13 6 4.3177 -5.7263 -1.3217 14 7 4.7665 -7.0742 -1.7005 15 6 5.4783 -7.3912 -2.8265 16 1 5.7567 -6.6164 -3.5254 17 6 5.8420 -8.7086 -3.0697 18 7 5.5031 -9.6528 -2.2176 19 14 6.8136 -9.1410 -4.6054 20 1 8.1050 -8.4080 -4.5970 21 1 7.0737 -10.6029 -4.6313 22 1 6.0338 -8.7562 -5.8092 23 6 4.3225 -8.0278 -0.6677 24 6 3.1005 -7.3490 -0.0001 25 1 2.1994 -7.4933 -0.5961 26 8 2.9129 -7.8288 1.3328 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 3.6975 -3.3318 0.0009 31 1 1.7115 -5.1323 0.8899 32 1 1.7119 -5.1319 -0.8900 33 1 3.6692 -5.3198 -2.0977 34 1 5.1799 -5.0753 -1.1779 35 1 5.7576 -10.5734 -2.3874 36 1 4.0287 -8.9727 -1.1250 37 1 5.1143 -8.1911 0.0634 38 1 2.6415 -8.7556 1.3827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957862977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:56 Heat of formation + Delta-G solvation = 14.224033 kcal Electronic energy + Delta-G solvation = -23281.086212 eV Core-core repulsion = 19673.195425 eV Total energy + Delta-G solvation = -3607.890787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.23942 -39.77344 -38.27658 -35.33446 -34.83097 -33.55135 -32.39509 -30.21296 -28.65298 -27.53773 -27.19875 -25.64086 -23.86425 -22.35486 -20.90092 -20.29612 -19.79019 -18.76652 -17.77618 -17.11615 -16.70808 -16.39264 -15.93644 -15.39854 -15.04522 -14.63411 -14.28754 -14.14569 -13.82528 -13.34992 -13.27831 -13.10157 -12.96922 -12.71442 -12.47573 -12.06543 -11.82723 -11.66311 -11.32648 -11.07205 -10.86201 -10.74608 -10.63263 -10.32983 -10.15539 -10.13554 -10.01318 -9.95495 -9.76439 -9.27261 -9.20508 -8.77142 -6.98939 -5.78074 -3.20993 -0.55674 0.52249 1.17603 1.65365 2.74832 2.79328 3.33567 3.38123 3.39189 3.59502 4.26982 4.33333 4.45878 4.62393 4.90457 5.01622 5.10711 5.32234 5.35022 5.39043 5.43992 5.56919 5.81720 5.83306 5.91313 5.94121 6.07930 6.16389 6.30634 6.46356 6.69572 7.15084 7.27869 7.36545 7.46960 7.67294 7.83571 8.07918 8.21605 9.07780 9.68627 10.31079 11.25834 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.003166 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.301186 B = 8842.311089 C = 9774.730500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.101 3.899 3 N -0.252 5.252 4 N -0.254 5.254 5 S 0.422 5.578 6 C -0.292 4.292 7 C 0.601 3.399 8 O -0.516 6.516 9 N -0.713 5.713 10 C 0.134 3.866 11 C -0.107 4.107 12 H 0.088 0.912 13 C 0.139 3.861 14 N -0.600 5.600 15 C -0.227 4.227 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.923 5.923 19 Si 0.917 3.083 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.128 3.872 24 C 0.082 3.918 25 H 0.062 0.938 26 O -0.569 6.569 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.401 0.599 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.025 0.975 35 H 0.254 0.746 36 H 0.110 0.890 37 H 0.023 0.977 38 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.887 13.763 6.474 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 N -0.118 5.118 4 N -0.235 5.235 5 S 0.558 5.442 6 C -0.433 4.433 7 C 0.384 3.616 8 O -0.393 6.393 9 N -0.365 5.365 10 C 0.011 3.989 11 C -0.126 4.126 12 H 0.106 0.894 13 C 0.013 3.987 14 N -0.327 5.327 15 C -0.355 4.355 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.747 3.253 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.002 3.998 24 C 0.022 3.978 25 H 0.080 0.920 26 O -0.374 6.374 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.235 0.765 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.127 0.873 37 H 0.041 0.959 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.833 15.103 6.513 17.451 hybrid contribution -0.229 -1.216 -0.945 1.557 sum -6.063 13.887 5.568 16.143 Atomic orbital electron populations 1.20541 0.83713 1.05002 1.04460 1.22971 1.00258 0.85013 0.96400 1.70633 0.96936 1.27988 1.16263 1.78867 1.09450 1.15781 1.19394 1.82681 1.09649 1.01343 1.50486 1.27806 0.98179 1.00112 1.17214 1.16407 0.86009 0.81871 0.77305 1.90815 1.15723 1.83034 1.49718 1.45941 1.09411 1.06818 1.74284 1.21557 0.96928 0.77490 1.02931 1.22436 0.95996 0.94287 0.99924 0.89372 1.21387 0.95319 0.89811 0.92162 1.44293 1.64275 1.00863 1.23312 1.19037 1.26570 0.92879 0.97052 0.90301 1.24804 1.01075 0.95686 0.98893 1.69748 1.50768 1.00418 1.36137 0.86116 0.79721 0.77257 0.82177 1.21102 1.21492 1.21052 1.22554 0.91330 0.95726 0.90156 1.23299 0.99230 0.92577 0.82692 0.92016 1.86363 1.91825 1.31672 1.27557 0.89249 0.87971 0.89892 0.76478 0.90518 0.90618 0.95277 0.95695 0.93515 0.87266 0.95908 0.77508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.90 36.01 0.36 -0.33 16 2 C 0.10 1.12 7.00 -82.84 -0.58 0.55 16 3 N -0.25 -3.08 11.54 33.42 0.39 -2.69 16 4 N -0.25 -2.98 12.51 60.35 0.75 -2.23 16 5 S 0.42 3.91 23.05 -107.50 -2.48 1.43 16 6 C -0.29 -3.23 6.80 -35.95 -0.24 -3.48 16 7 C 0.60 7.55 7.80 -12.63 -0.10 7.45 16 8 O -0.52 -7.71 14.89 5.25 0.08 -7.63 16 9 N -0.71 -8.44 5.40 -61.47 -0.33 -8.77 16 10 C 0.13 1.82 4.99 -4.05 -0.02 1.80 16 11 C -0.11 -1.69 2.75 -88.79 -0.24 -1.94 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 13 C 0.14 2.60 6.52 -3.06 -0.02 2.58 16 14 N -0.60 -14.39 3.39 -170.08 -0.58 -14.97 16 15 C -0.23 -6.02 10.27 -15.06 -0.15 -6.18 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -25.66 10.09 55.49 0.56 -25.10 16 19 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 C 0.13 2.89 5.62 -2.53 -0.01 2.88 16 24 C 0.08 1.45 3.88 -24.58 -0.10 1.36 16 25 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 26 O -0.57 -9.11 13.47 -35.23 -0.47 -9.59 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 0.99 6.47 -51.93 -0.34 0.66 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.40 4.02 7.75 -40.82 -0.32 3.71 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.09 8.06 -51.93 -0.42 0.67 16 33 H 0.03 0.54 7.77 -51.93 -0.40 0.14 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 36 H 0.11 2.77 5.87 -51.93 -0.30 2.47 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.38 4.66 9.12 45.56 0.42 5.07 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -31.63 334.33 -7.14 -38.77 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -3.86 Total: 5.19 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -1.21 Total: 4.35 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.79 Total: -53.76 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.40 Total: -17.22 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -2.48 Total: 1.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.63 -7.14 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957862977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.999 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds