Wall clock time and date at job start Fri Apr 10 2020 18:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31240 * 124.04991 * 2 1 4 4 N 1.27344 * 120.03414 * 179.97438 * 3 2 1 5 5 S 1.56637 * 109.74066 * 359.97438 * 4 3 2 6 6 C 1.38244 * 124.05883 * 179.97438 * 2 1 3 7 7 C 1.47171 * 128.47521 * 0.02562 * 6 2 1 8 8 O 1.21627 * 119.99658 * 359.97438 * 7 6 2 9 9 N 1.34780 * 120.00125 * 179.97438 * 7 6 2 10 10 C 1.46492 * 119.99843 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46999 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.64079 * 56.68760 * 11 10 9 13 13 C 1.54322 * 110.72214 * 293.54675 * 11 10 9 14 14 N 1.47026 * 107.27431 * 219.44332 * 13 11 10 15 15 C 1.36931 * 125.64830 * 178.90259 * 14 13 11 16 16 H 1.08001 * 120.00343 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00004 * 180.02562 * 15 14 13 18 18 N 1.31618 * 119.99465 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00019 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47740 * 59.99497 * 19 17 15 21 21 H 1.48508 * 109.47102 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47007 * 299.99144 * 19 17 15 23 23 C 1.47424 * 108.69898 * 358.93761 * 14 13 11 24 24 C 1.54905 * 104.83400 * 24.13162 * 23 14 13 25 25 H 1.08998 * 111.01071 * 81.06155 * 24 23 14 26 26 O 1.42904 * 111.00315 * 204.91457 * 24 23 14 27 27 H 1.09005 * 109.46754 * 90.03073 * 1 2 3 28 28 H 1.09004 * 109.47160 * 210.02173 * 1 2 3 29 29 H 1.09000 * 109.47637 * 330.02971 * 1 2 3 30 30 H 0.96994 * 119.99382 * 0.02562 * 9 7 6 31 31 H 1.08999 * 109.47343 * 300.00026 * 10 9 7 32 32 H 1.09000 * 109.47455 * 59.99838 * 10 9 7 33 33 H 1.09000 * 109.88067 * 338.86241 * 13 11 10 34 34 H 1.08993 * 109.88687 * 100.02074 * 13 11 10 35 35 H 0.97009 * 119.99243 * 180.02562 * 18 17 15 36 36 H 1.09004 * 110.36322 * 142.96507 * 23 14 13 37 37 H 1.08997 * 110.36707 * 265.17471 * 23 14 13 38 38 H 0.96697 * 114.00203 * 292.19440 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0874 0.0000 4 7 3.5122 0.9982 0.0005 5 16 3.9367 -0.5095 0.0017 6 6 2.2812 -1.1453 0.0005 7 6 1.8395 -2.5492 0.0006 8 8 0.6522 -2.8130 0.0007 9 7 2.7507 -3.5423 0.0006 10 6 2.3109 -4.9397 0.0002 11 6 3.5338 -5.8592 0.0009 12 1 4.1770 -5.6424 0.8539 13 6 4.3177 -5.7263 -1.3217 14 7 4.7665 -7.0742 -1.7005 15 6 5.4783 -7.3912 -2.8265 16 1 5.7567 -6.6164 -3.5254 17 6 5.8420 -8.7086 -3.0697 18 7 5.5031 -9.6528 -2.2176 19 14 6.8136 -9.1410 -4.6054 20 1 8.1050 -8.4080 -4.5970 21 1 7.0737 -10.6029 -4.6313 22 1 6.0338 -8.7562 -5.8092 23 6 4.3225 -8.0278 -0.6677 24 6 3.1005 -7.3490 -0.0001 25 1 2.1994 -7.4933 -0.5961 26 8 2.9129 -7.8288 1.3328 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 3.6975 -3.3318 0.0009 31 1 1.7115 -5.1323 0.8899 32 1 1.7119 -5.1319 -0.8900 33 1 3.6692 -5.3198 -2.0977 34 1 5.1799 -5.0753 -1.1779 35 1 5.7576 -10.5734 -2.3874 36 1 4.0287 -8.9727 -1.1250 37 1 5.1143 -8.1911 0.0634 38 1 2.6415 -8.7556 1.3827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957862977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:55 Heat of formation + Delta-G solvation = -10.902419 kcal Electronic energy + Delta-G solvation = -23282.175777 eV Core-core repulsion = 19673.195425 eV Total energy + Delta-G solvation = -3608.980352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.09067 -40.83767 -39.69640 -36.64181 -36.22700 -34.38610 -34.05574 -31.69162 -29.81985 -28.97755 -28.03995 -27.19352 -25.31733 -23.40383 -22.28811 -21.61950 -21.06444 -19.57832 -19.02172 -18.68220 -18.10696 -17.27735 -17.03573 -16.92806 -16.33348 -15.77289 -15.66384 -15.33867 -15.06949 -14.71895 -14.37841 -14.13373 -14.00472 -13.93262 -13.66740 -13.49490 -13.24656 -13.09002 -12.71820 -12.57376 -12.37467 -12.36031 -11.89019 -11.86950 -11.57155 -11.35637 -11.14964 -10.98239 -10.81660 -10.79406 -10.71307 -10.24331 -8.90594 -7.78485 -5.23282 -1.40146 -0.27575 0.36569 0.79750 1.49040 1.50969 1.57266 1.79180 1.81702 2.48851 2.78675 3.21147 3.32202 3.44828 3.53658 3.64489 3.77813 3.93245 4.13297 4.23655 4.44725 4.47616 4.61970 4.67911 4.74036 4.78364 4.89689 4.97192 5.11043 5.23170 5.31838 5.45104 5.50418 5.76231 6.21407 6.26968 6.53390 6.88250 6.90987 7.09188 7.75930 8.37911 9.22964 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.003166 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.301186 B = 8842.311089 C = 9774.730500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.099 3.901 3 N -0.273 5.273 4 N -0.281 5.281 5 S 0.494 5.506 6 C -0.312 4.312 7 C 0.606 3.394 8 O -0.542 6.542 9 N -0.707 5.707 10 C 0.147 3.853 11 C -0.091 4.091 12 H 0.095 0.905 13 C 0.136 3.864 14 N -0.623 5.623 15 C -0.239 4.239 16 H 0.085 0.915 17 C -0.065 4.065 18 N -0.948 5.948 19 Si 0.979 3.021 20 H -0.279 1.279 21 H -0.296 1.296 22 H -0.277 1.277 23 C 0.132 3.868 24 C 0.098 3.902 25 H 0.070 0.930 26 O -0.569 6.569 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.410 0.590 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.247 0.753 36 H 0.078 0.922 37 H -0.008 1.008 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.949 15.099 6.531 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 N -0.138 5.138 4 N -0.262 5.262 5 S 0.631 5.369 6 C -0.453 4.453 7 C 0.390 3.610 8 O -0.420 6.420 9 N -0.359 5.359 10 C 0.024 3.976 11 C -0.110 4.110 12 H 0.114 0.886 13 C 0.011 3.989 14 N -0.350 5.350 15 C -0.368 4.368 16 H 0.103 0.897 17 C -0.258 4.258 18 N -0.598 5.598 19 Si 0.807 3.193 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.203 1.203 23 C 0.006 3.994 24 C 0.037 3.963 25 H 0.088 0.912 26 O -0.376 6.376 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.247 0.753 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.010 0.990 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.890 16.477 6.583 18.695 hybrid contribution -0.149 -1.634 -0.933 1.887 sum -6.039 14.843 5.650 16.991 Atomic orbital electron populations 1.20596 0.82612 1.05329 1.05061 1.23285 1.01134 0.84837 0.95639 1.70692 0.97110 1.28593 1.17424 1.78661 1.09631 1.17777 1.20105 1.82380 1.07448 0.99190 1.47930 1.27697 0.99701 0.99365 1.18520 1.16469 0.85597 0.82327 0.76594 1.90806 1.16801 1.83538 1.50877 1.45793 1.09949 1.06060 1.74110 1.21292 0.95503 0.77851 1.02979 1.22274 0.96567 0.93575 0.98595 0.88638 1.21576 0.96111 0.87563 0.93665 1.44573 1.64221 1.03285 1.22968 1.19430 1.26294 0.93153 0.97951 0.89722 1.25601 1.02610 0.95850 1.01693 1.69998 1.51922 1.00226 1.37625 0.85150 0.78586 0.76391 0.79184 1.20469 1.22173 1.20293 1.22329 0.92435 0.95235 0.89401 1.22971 0.97054 0.93118 0.83109 0.91201 1.86339 1.91705 1.33256 1.26278 0.88440 0.88753 0.88371 0.75328 0.90039 0.91102 0.94643 0.94336 0.94292 0.90435 0.99011 0.75624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 9.90 71.24 0.71 -0.56 16 2 C 0.10 2.07 7.00 42.65 0.30 2.37 16 3 N -0.27 -6.29 11.54 -48.18 -0.56 -6.85 16 4 N -0.28 -6.12 12.51 37.02 0.46 -5.66 16 5 S 0.49 7.99 23.05 -56.49 -1.30 6.69 16 6 C -0.31 -6.31 6.80 24.62 0.17 -6.15 16 7 C 0.61 14.04 7.80 86.59 0.68 14.71 16 8 O -0.54 -15.37 14.89 -4.12 -0.06 -15.43 16 9 N -0.71 -14.98 5.40 -466.64 -2.52 -17.50 16 10 C 0.15 3.64 4.99 86.38 0.43 4.07 16 11 C -0.09 -2.69 2.75 -9.61 -0.03 -2.71 16 12 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 13 C 0.14 4.84 6.52 86.73 0.57 5.41 16 14 N -0.62 -29.78 3.39 -692.00 -2.35 -32.13 16 15 C -0.24 -12.67 10.27 84.04 0.86 -11.81 16 16 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 17 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 18 N -0.95 -54.03 10.09 21.65 0.22 -53.81 16 19 Si 0.98 43.79 29.55 68.60 2.03 45.82 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 23 C 0.13 6.05 5.62 86.85 0.49 6.54 16 24 C 0.10 3.35 3.88 31.99 0.12 3.47 16 25 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 26 O -0.57 -17.26 13.47 -148.98 -2.01 -19.27 16 27 H 0.10 1.44 8.14 -2.38 -0.02 1.43 16 28 H 0.09 1.74 6.47 -2.39 -0.02 1.73 16 29 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.41 7.03 7.75 -92.71 -0.72 6.31 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 33 H 0.04 1.24 7.77 -2.39 -0.02 1.22 16 34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.25 13.80 8.31 -92.70 -0.77 13.03 16 36 H 0.08 4.06 5.87 -2.38 -0.01 4.05 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.39 9.16 9.12 -74.06 -0.68 8.49 16 Total: -1.00 -68.14 334.33 -1.60 -69.73 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -0.27 Total: 16.11 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 4.76 Total: 12.30 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -4.74 Total: -115.95 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -2.07 Total: -34.70 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 7.99 SS G_CDS: -1.30 Total: 6.69 kcal Total: -68.14 -1.60 -69.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957862977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.830 kcal (2) G-P(sol) polarization free energy of solvation -68.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds