Wall clock time and date at job start Fri Apr 10 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21579 * 120.00132 * 0.02562 * 5 4 2 7 7 C 1.47663 * 119.99892 * 180.02562 * 5 4 2 8 8 N 1.31825 * 126.46337 * 359.69146 * 7 5 4 9 9 N 1.28466 * 110.13770 * 179.87710 * 8 7 5 10 10 C 1.46508 * 124.93559 * 180.12144 * 9 8 7 11 11 C 1.35639 * 110.13246 * 0.39759 * 9 8 7 12 12 C 1.35455 * 107.13065 * 359.75932 * 11 9 8 13 13 Cl 1.73608 * 127.23994 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 15 15 C 1.53504 * 114.20785 * 300.00220 * 14 2 1 16 16 N 1.47069 * 87.98363 * 220.34571 * 15 14 2 17 17 C 1.36941 * 136.05552 * 207.07801 * 16 15 14 18 18 H 1.08000 * 119.99396 * 7.56018 * 17 16 15 19 19 C 1.38806 * 119.99993 * 187.55101 * 17 16 15 20 20 N 1.31621 * 119.99759 * 174.37714 * 19 17 16 21 21 Si 1.86799 * 119.99972 * 354.38427 * 19 17 16 22 22 H 1.48501 * 109.46963 * 174.94900 * 21 19 17 23 23 H 1.48498 * 109.47184 * 294.94894 * 21 19 17 24 24 H 1.48507 * 109.47082 * 54.95224 * 21 19 17 25 25 C 1.47064 * 87.88742 * 27.34488 * 16 15 14 26 26 H 1.08991 * 109.47021 * 299.99820 * 1 2 3 27 27 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 28 28 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 29 29 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 30 30 H 1.09004 * 109.46913 * 270.31355 * 10 9 8 31 31 H 1.08997 * 109.46862 * 30.31282 * 10 9 8 32 32 H 1.08994 * 109.46894 * 150.31257 * 10 9 8 33 33 H 1.07998 * 126.43640 * 179.76235 * 11 9 8 34 34 H 1.09002 * 113.41395 * 73.19962 * 14 2 1 35 35 H 1.08997 * 113.46758 * 105.56146 * 15 14 2 36 36 H 1.09000 * 113.51898 * 335.13170 * 15 14 2 37 37 H 0.96993 * 120.00423 * 354.88754 * 20 19 17 38 38 H 1.08993 * 113.47012 * 87.43421 * 25 16 15 39 39 H 1.09000 * 113.46758 * 217.87997 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1614 -2.4117 7 6 2.6388 -0.7146 -3.5629 8 7 2.9921 -1.9818 -3.6465 9 7 3.3688 -2.2580 -4.8432 10 6 3.8261 -3.5741 -5.2962 11 6 3.2874 -1.1525 -5.6250 12 6 2.8256 -0.1456 -4.8455 13 17 2.5265 1.4975 -5.3195 14 6 2.0401 -0.7212 1.2493 15 6 1.5899 -0.0845 2.5715 16 7 2.9390 -0.3444 3.0960 17 6 3.4927 -0.5600 4.3298 18 1 2.8558 -0.6814 5.1935 19 6 4.8722 -0.6227 4.4701 20 7 5.4081 -0.7189 5.6684 21 14 5.9681 -0.5704 2.9583 22 1 7.3914 -0.5289 3.3799 23 1 5.7314 -1.7821 2.1331 24 1 5.6528 0.6416 2.1600 25 6 3.4330 -0.2640 1.7131 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 2.2491 -1.6318 -1.1525 30 1 4.9044 -3.6516 -5.1573 31 1 3.3282 -4.3511 -4.7163 32 1 3.5858 -3.6985 -6.3521 33 1 3.5427 -1.0874 -6.6724 34 1 1.9119 -1.8028 1.2077 35 1 0.8095 -0.6492 3.0816 36 1 1.3545 0.9763 2.4855 37 1 4.8450 -0.6714 6.4568 38 1 3.6837 0.7494 1.3999 39 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969740353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:08 Heat of formation + Delta-G solvation = 76.746484 kcal Electronic energy + Delta-G solvation = -23440.364254 eV Core-core repulsion = 19833.140938 eV Total energy + Delta-G solvation = -3607.223317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.72941 -41.06607 -39.86905 -37.50719 -36.29034 -34.60879 -34.34763 -32.20523 -31.48610 -29.53350 -28.39238 -27.02204 -25.52865 -24.25944 -22.60769 -22.44794 -21.41089 -20.79635 -19.55775 -18.98274 -17.69345 -17.49435 -17.38466 -17.03636 -16.00497 -15.88102 -15.67148 -15.53005 -15.16591 -14.94847 -14.67779 -14.32289 -13.86709 -13.66313 -13.48746 -13.28669 -13.22526 -13.11898 -12.80790 -12.62650 -12.51901 -12.37798 -12.13380 -11.73122 -11.71013 -11.33141 -11.11241 -11.03839 -10.85028 -10.41627 -10.08058 -9.81133 -9.24199 -8.63087 -5.49100 0.39652 0.85340 0.96658 1.35060 1.44787 1.63485 1.70420 2.14417 2.27397 2.50307 2.97133 3.16567 3.31856 3.47985 3.72272 3.84239 3.95386 4.20232 4.32815 4.37729 4.44072 4.44616 4.48579 4.57537 4.65995 4.68418 4.74591 4.80073 4.84283 4.87893 5.05213 5.18567 5.30610 5.40016 5.54006 5.66659 5.93714 6.41835 6.68620 6.73360 7.16856 7.30972 8.26374 8.88737 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.003540 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.885341 B = 7908.499110 C = 8537.582325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.161 3.839 3 H 0.074 0.926 4 N -0.701 5.701 5 C 0.596 3.404 6 O -0.552 6.552 7 C -0.031 4.031 8 N -0.256 5.256 9 N -0.270 5.270 10 C 0.075 3.925 11 C 0.022 3.978 12 C -0.133 4.133 13 Cl -0.022 7.022 14 C -0.103 4.103 15 C 0.132 3.868 16 N -0.662 5.662 17 C -0.290 4.290 18 H 0.055 0.945 19 C -0.083 4.083 20 N -0.972 5.972 21 Si 1.106 2.894 22 H -0.303 1.303 23 H -0.269 1.269 24 H -0.271 1.271 25 C 0.092 3.908 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.413 0.587 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.236 0.764 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.247 0.753 38 H 0.043 0.957 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 -6.630 -31.566 33.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 H 0.092 0.908 4 N -0.352 5.352 5 C 0.381 3.619 6 O -0.428 6.428 7 C -0.190 4.190 8 N -0.094 5.094 9 N -0.059 5.059 10 C -0.063 4.063 11 C -0.123 4.123 12 C -0.171 4.171 13 Cl 0.006 6.994 14 C -0.123 4.123 15 C 0.007 3.993 16 N -0.390 5.390 17 C -0.418 4.418 18 H 0.073 0.927 19 C -0.275 4.275 20 N -0.617 5.617 21 Si 0.933 3.067 22 H -0.231 1.231 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.032 4.032 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.249 0.751 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.154 0.846 33 H 0.252 0.748 34 H 0.134 0.866 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.526 -6.905 -31.289 32.515 hybrid contribution -1.415 0.840 0.982 1.916 sum -6.941 -6.064 -30.308 31.678 Atomic orbital electron populations 1.22053 0.93109 1.03160 1.02552 1.20859 0.95362 0.96191 0.82001 0.90783 1.45852 1.66125 1.14667 1.08588 1.17061 0.77273 0.85553 0.82032 1.90808 1.51382 1.15795 1.84830 1.21768 1.10429 0.91524 0.95308 1.73582 1.15661 1.15260 1.04914 1.45947 1.43573 1.11771 1.04564 1.22785 1.02691 0.76950 1.03859 1.23238 1.04129 0.84452 1.00471 1.21094 1.12298 0.89766 0.93918 1.98356 1.94766 1.15189 1.91088 1.23249 0.95112 1.01172 0.92787 1.22478 0.87929 0.98270 0.90644 1.46112 1.07025 1.84175 1.01729 1.20077 0.92011 1.45267 0.84418 0.92746 1.26939 0.96142 0.99769 1.04674 1.71003 1.37419 1.55635 0.97646 0.83274 0.73659 0.77941 0.71809 1.23078 1.19511 1.19674 1.23024 0.97325 0.98485 0.84399 0.90482 0.92859 0.90914 0.75063 0.87846 0.87672 0.84650 0.74804 0.86644 0.92305 0.93016 0.94358 0.93887 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.29 71.98 0.67 -2.85 16 2 C 0.16 4.49 2.47 44.99 0.11 4.60 16 3 H 0.07 2.39 7.32 -2.39 -0.02 2.38 16 4 N -0.70 -18.57 5.07 -445.57 -2.26 -20.83 16 5 C 0.60 17.76 7.79 86.73 0.68 18.43 16 6 O -0.55 -19.57 15.54 -3.97 -0.06 -19.63 16 7 C -0.03 -0.78 7.13 42.45 0.30 -0.48 16 8 N -0.26 -5.30 11.66 -48.17 -0.56 -5.86 16 9 N -0.27 -3.43 3.72 -368.86 -1.37 -4.80 16 10 C 0.07 0.13 11.32 127.77 1.45 1.57 16 11 C 0.02 0.27 11.49 83.46 0.96 1.23 16 12 C -0.13 -2.90 6.80 22.44 0.15 -2.74 16 13 Cl -0.02 -0.53 28.18 -2.72 -0.08 -0.60 16 14 C -0.10 -3.29 3.67 -10.37 -0.04 -3.33 16 15 C 0.13 4.95 7.33 83.18 0.61 5.56 16 16 N -0.66 -32.78 3.69 -737.86 -2.72 -35.50 16 17 C -0.29 -17.37 11.08 84.03 0.93 -16.44 16 18 H 0.05 3.48 8.06 -2.91 -0.02 3.45 16 19 C -0.08 -5.14 5.50 84.86 0.47 -4.68 16 20 N -0.97 -64.39 13.70 21.65 0.30 -64.09 16 21 Si 1.11 55.93 25.16 68.60 1.73 57.66 16 22 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 23 H -0.27 -12.34 6.51 99.48 0.65 -11.70 16 24 H -0.27 -12.84 6.21 99.48 0.62 -12.22 16 25 C 0.09 3.86 5.27 83.27 0.44 4.30 16 26 H 0.08 1.70 7.48 -2.39 -0.02 1.68 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.41 9.54 8.32 -92.71 -0.77 8.77 16 30 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 31 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.14 -0.71 8.13 -2.39 -0.02 -0.73 16 33 H 0.24 0.62 8.06 -2.91 -0.02 0.60 16 34 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 37 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 38 H 0.04 1.84 7.44 -2.39 -0.02 1.83 16 39 H 0.05 2.01 4.73 -2.39 -0.01 1.99 16 Total: -1.00 -83.43 340.91 1.82 -81.61 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.12 Total: 6.86 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 6.72 Total: 5.18 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -6.62 Total: -131.08 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.06 Total: -19.63 kcal Atomic # 14 Polarization: 55.93 SS G_CDS: 1.73 Total: 57.66 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.60 kcal Total: -83.43 1.82 -81.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969740353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.356 kcal (2) G-P(sol) polarization free energy of solvation -83.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds