Wall clock time and date at job start Fri Apr 10 2020 18:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47301 * 2 1 4 4 N 1.46502 * 109.47346 * 240.00124 * 2 1 3 5 5 C 1.34784 * 119.99971 * 84.99395 * 4 2 1 6 6 O 1.21692 * 119.99701 * 354.62682 * 5 4 2 7 7 C 1.46659 * 119.99902 * 174.62289 * 5 4 2 8 8 C 1.36675 * 126.84212 * 4.88215 * 7 5 4 9 9 N 1.33307 * 107.82982 * 179.97438 * 8 7 5 10 10 C 1.31022 * 109.70367 * 359.97438 * 9 8 7 11 11 Cl 1.73601 * 125.43325 * 180.02562 * 10 9 8 12 12 N 1.34598 * 109.12726 * 359.75038 * 10 9 8 13 13 C 1.46507 * 126.48784 * 180.26815 * 12 10 9 14 14 C 1.53001 * 109.47263 * 120.00253 * 2 1 3 15 15 C 1.53497 * 114.20608 * 299.99581 * 14 2 1 16 16 N 1.47065 * 87.98374 * 220.34699 * 15 14 2 17 17 C 1.36942 * 136.05340 * 207.08392 * 16 15 14 18 18 H 1.07995 * 119.99910 * 7.08809 * 17 16 15 19 19 C 1.38812 * 119.99867 * 187.09238 * 17 16 15 20 20 N 1.31623 * 120.00033 * 6.78325 * 19 17 16 21 21 Si 1.86798 * 120.00089 * 186.77937 * 19 17 16 22 22 H 1.48503 * 109.47298 * 265.02079 * 21 19 17 23 23 H 1.48506 * 109.46736 * 25.01857 * 21 19 17 24 24 H 1.48499 * 109.47294 * 145.01660 * 21 19 17 25 25 C 1.47064 * 87.88687 * 27.34518 * 16 15 14 26 26 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47107 * 299.99918 * 1 2 3 28 28 H 1.09000 * 109.47397 * 59.99865 * 1 2 3 29 29 H 0.97001 * 119.99992 * 265.00379 * 4 2 1 30 30 H 1.08001 * 126.08638 * 359.97438 * 8 7 5 31 31 H 1.08998 * 109.47144 * 271.30306 * 13 12 10 32 32 H 1.08993 * 109.47050 * 31.30908 * 13 12 10 33 33 H 1.09003 * 109.46586 * 151.30277 * 13 12 10 34 34 H 1.08995 * 113.41717 * 73.20336 * 14 2 1 35 35 H 1.08994 * 113.46435 * 105.56665 * 15 14 2 36 36 H 1.09001 * 113.51925 * 335.13892 * 15 14 2 37 37 H 0.96994 * 120.00079 * 180.02562 * 20 19 17 38 38 H 1.09000 * 113.47156 * 87.43953 * 25 16 15 39 39 H 1.08997 * 113.46473 * 217.87497 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.7662 1.1348 -2.4380 7 6 2.7458 -0.6761 -3.5231 8 6 3.1331 -1.9834 -3.6173 9 7 3.6263 -2.1759 -4.8408 10 6 3.5689 -1.0577 -5.5212 11 17 4.1023 -0.8481 -7.1599 12 7 3.0248 -0.0990 -4.7489 13 6 2.7781 1.2933 -5.1326 14 6 2.0400 -0.7213 1.2492 15 6 1.5899 -0.0847 2.5714 16 7 2.9391 -0.3446 3.0958 17 6 3.4927 -0.5604 4.3296 18 1 2.8562 -0.6743 5.1946 19 6 4.8720 -0.6327 4.4683 20 7 5.6517 -0.3621 3.4430 21 14 5.6216 -1.1138 6.1103 22 1 5.9637 0.1115 6.8763 23 1 4.6447 -1.9235 6.8821 24 1 6.8520 -1.9120 5.8778 25 6 3.4329 -0.2643 1.7129 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.2490 -1.6318 -1.1526 30 1 3.0537 -2.7281 -2.8391 31 1 3.6609 1.8930 -4.9114 32 1 2.5629 1.3432 -6.1999 33 1 1.9267 1.6792 -4.5719 34 1 1.9119 -1.8029 1.2075 35 1 0.8096 -0.6494 3.0816 36 1 1.3545 0.9762 2.4855 37 1 6.6154 -0.4129 3.5398 38 1 3.6838 0.7492 1.3997 39 1 4.2228 -0.9820 1.4917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970154700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:32 Heat of formation + Delta-G solvation = 80.055346 kcal Electronic energy + Delta-G solvation = -23333.305415 eV Core-core repulsion = 19726.225581 eV Total energy + Delta-G solvation = -3607.079834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.53538 -39.68554 -38.19665 -37.35048 -35.18999 -34.30039 -32.36280 -31.23595 -29.31272 -27.58442 -27.46142 -24.94168 -24.15504 -23.36172 -21.97605 -21.00795 -20.37942 -19.25547 -18.07588 -16.84412 -16.61535 -16.50088 -16.19288 -15.04229 -14.90451 -14.68816 -14.62896 -14.03376 -13.88852 -13.53543 -13.48503 -13.15012 -13.07905 -12.49669 -12.26211 -12.10458 -11.95877 -11.73824 -11.44822 -11.24838 -11.01697 -10.80040 -10.68383 -10.43374 -10.16096 -10.09339 -9.89043 -9.83976 -9.27396 -9.05550 -8.80288 -8.75685 -6.91213 -5.81195 -3.12451 0.86861 0.93797 2.33824 2.39118 3.13723 3.23577 3.37541 3.42665 3.45021 4.30527 4.39974 4.42992 4.67966 4.88561 4.97999 5.04966 5.18041 5.23505 5.29006 5.48808 5.60798 5.64744 5.71427 5.88759 5.97522 6.05774 6.16309 6.30960 6.34583 6.36766 6.48339 6.61423 6.70916 7.14759 7.29473 7.31695 7.48557 7.49703 7.93856 8.10234 9.00547 9.67242 10.61382 11.37371 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.002866 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.644849 B = 9768.666497 C =10631.020354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 H 0.090 0.910 4 N -0.700 5.700 5 C 0.595 3.405 6 O -0.545 6.545 7 C -0.063 4.063 8 C 0.049 3.951 9 N -0.468 5.468 10 C 0.257 3.743 11 Cl 0.040 6.960 12 N -0.413 5.413 13 C 0.060 3.940 14 C -0.155 4.155 15 C 0.130 3.870 16 N -0.610 5.610 17 C -0.221 4.221 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.279 1.279 24 H -0.289 1.289 25 C 0.170 3.830 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.403 0.597 30 H 0.191 0.809 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.042 0.958 36 H 0.033 0.967 37 H 0.254 0.746 38 H 0.029 0.971 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 -0.316 -19.538 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.108 0.892 4 N -0.350 5.350 5 C 0.381 3.619 6 O -0.424 6.424 7 C -0.180 4.180 8 C -0.106 4.106 9 N -0.189 5.189 10 C -0.030 4.030 11 Cl 0.067 6.933 12 N -0.096 5.096 13 C -0.082 4.082 14 C -0.175 4.175 15 C 0.003 3.997 16 N -0.335 5.335 17 C -0.348 4.348 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.205 1.205 24 H -0.216 1.216 25 C 0.044 3.956 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.238 0.762 30 H 0.208 0.792 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.686 -0.049 -19.812 21.251 hybrid contribution 0.522 0.276 0.886 1.065 sum -7.164 0.228 -18.926 20.237 Atomic orbital electron populations 1.22135 0.95292 1.01997 1.02290 1.21083 0.93732 0.97351 0.82401 0.89245 1.45760 1.66225 1.14153 1.08834 1.16602 0.78218 0.85443 0.81638 1.90783 1.50591 1.17223 1.83785 1.20905 1.13549 0.95117 0.88422 1.22729 0.99355 0.93799 0.94673 1.70063 1.21030 1.22706 1.05081 1.23201 1.03851 0.86137 0.89798 1.98428 1.87953 1.96675 1.10233 1.45036 1.43602 1.11144 1.09833 1.22453 1.05496 0.77598 1.02635 1.23704 1.01641 0.99858 0.92270 1.22309 0.90409 0.96749 0.90260 1.45671 1.02990 1.82097 1.02762 1.18940 0.89851 1.42112 0.83883 0.90076 1.24841 0.95859 1.01898 0.97789 1.69852 1.03277 1.53712 1.29614 0.86107 0.78800 0.78041 0.82837 1.21612 1.20481 1.21559 1.22040 0.91962 0.97863 0.83750 0.92533 0.91214 0.92611 0.76219 0.79184 0.89468 0.89306 0.86729 0.88789 0.94002 0.94929 0.93605 0.95371 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.29 37.15 0.35 -1.59 16 2 C 0.16 2.23 2.43 -67.93 -0.17 2.07 16 3 H 0.09 1.46 7.40 -51.93 -0.38 1.08 16 4 N -0.70 -8.66 5.06 -55.12 -0.28 -8.94 16 5 C 0.60 8.05 7.74 -12.86 -0.10 7.96 16 6 O -0.54 -8.64 14.50 5.20 0.08 -8.56 16 7 C -0.06 -0.78 6.91 -82.10 -0.57 -1.34 16 8 C 0.05 0.56 11.37 -17.48 -0.20 0.36 16 9 N -0.47 -6.06 11.21 -11.48 -0.13 -6.19 16 10 C 0.26 3.00 8.48 -90.34 -0.77 2.24 16 11 Cl 0.04 0.36 28.76 -51.86 -1.49 -1.13 16 12 N -0.41 -4.74 3.18 -118.36 -0.38 -5.11 16 13 C 0.06 0.52 10.58 59.85 0.63 1.15 16 14 C -0.15 -2.58 3.67 -89.97 -0.33 -2.91 16 15 C 0.13 2.50 7.33 -8.51 -0.06 2.44 16 16 N -0.61 -15.32 3.76 -184.60 -0.69 -16.02 16 17 C -0.22 -6.13 10.73 -15.06 -0.16 -6.29 16 18 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -27.20 11.84 55.49 0.66 -26.55 16 21 Si 0.91 21.95 29.56 -169.99 -5.02 16.93 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.17 3.82 6.79 -8.37 -0.06 3.77 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 28 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.40 4.06 7.54 -40.82 -0.31 3.75 16 30 H 0.19 1.58 7.46 -52.49 -0.39 1.19 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.55 7.83 -51.93 -0.41 0.14 16 33 H 0.11 1.13 6.35 -51.93 -0.33 0.80 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.03 0.68 7.93 -51.93 -0.41 0.27 16 39 H 0.06 1.46 7.61 -51.93 -0.40 1.07 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -33.60 344.52 -8.69 -42.29 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.09 Total: 0.52 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -1.53 Total: 7.57 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -0.82 Total: -62.81 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.49 Total: -1.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.60 -8.69 -42.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970154700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.349 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds