Wall clock time and date at job start Fri Apr 10 2020 18:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21608 * 119.99614 * 359.97438 * 5 4 2 7 7 C 1.47383 * 119.99823 * 180.02562 * 5 4 2 8 8 C 1.38058 * 126.42419 * 359.97438 * 7 5 4 9 9 N 1.34236 * 107.43764 * 179.97438 * 8 7 5 10 10 C 1.46500 * 125.73603 * 180.02562 * 9 8 7 11 11 N 1.39922 * 108.52505 * 0.02562 * 9 8 7 12 12 C 1.30535 * 108.89166 * 359.74987 * 11 9 8 13 13 Cl 1.73608 * 126.00443 * 180.26496 * 12 11 9 14 14 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 15 15 C 1.53486 * 114.20850 * 60.00280 * 14 2 1 16 16 N 1.47064 * 87.98715 * 87.51930 * 15 14 2 17 17 C 1.36944 * 136.05968 * 207.08932 * 16 15 14 18 18 H 1.08003 * 119.99220 * 7.55219 * 17 16 15 19 19 C 1.38804 * 120.00270 * 187.55676 * 17 16 15 20 20 N 1.31616 * 120.00491 * 174.37770 * 19 17 16 21 21 Si 1.86810 * 119.99801 * 354.37977 * 19 17 16 22 22 H 1.48499 * 109.46858 * 174.95062 * 21 19 17 23 23 H 1.48498 * 109.46907 * 294.94544 * 21 19 17 24 24 H 1.48495 * 109.47036 * 54.94600 * 21 19 17 25 25 C 1.47066 * 87.88390 * 27.34185 * 16 15 14 26 26 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 28 28 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 29 29 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 30 30 H 1.08005 * 126.28588 * 359.97262 * 8 7 5 31 31 H 1.09007 * 109.47221 * 90.00371 * 10 9 8 32 32 H 1.09007 * 109.47141 * 209.99870 * 10 9 8 33 33 H 1.09000 * 109.47590 * 329.99549 * 10 9 8 34 34 H 1.08998 * 113.41116 * 286.79710 * 14 2 1 35 35 H 1.09003 * 113.46770 * 332.73878 * 15 14 2 36 36 H 1.09004 * 113.52153 * 202.31032 * 15 14 2 37 37 H 0.97003 * 119.99848 * 354.81683 * 20 19 17 38 38 H 1.08996 * 113.46631 * 87.44126 * 25 16 15 39 39 H 1.09001 * 113.46561 * 217.88042 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8583 1.1617 2.4116 7 6 2.6389 -0.7130 3.5604 8 6 3.0034 -2.0417 3.6483 9 7 3.3917 -2.2694 4.9129 10 6 3.8608 -3.5507 5.4464 11 7 3.2731 -1.0773 5.6359 12 6 2.8305 -0.1424 4.8397 13 17 2.5277 1.5105 5.2758 14 6 2.0399 -0.7213 -1.2493 15 6 1.5898 -0.0846 -2.5714 16 7 2.7723 0.7864 -2.4946 17 6 3.1105 2.0324 -2.9511 18 1 2.3637 2.6574 -3.4180 19 6 4.4131 2.4918 -2.8140 20 7 4.7655 3.6412 -3.3498 21 14 5.6662 1.4788 -1.8688 22 1 7.0008 2.1220 -1.9706 23 1 5.2629 1.3987 -0.4418 24 1 5.7308 0.1107 -2.4425 25 6 3.4340 -0.2723 -1.7172 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.2490 -1.6318 1.1526 30 1 2.9804 -2.7652 2.8468 31 1 4.9422 -3.6199 5.3272 32 1 3.6069 -3.6187 6.5043 33 1 3.3826 -4.3668 4.9048 34 1 1.9117 -1.8029 -1.2076 35 1 0.6466 0.4562 -2.4938 36 1 1.6122 -0.7736 -3.4158 37 1 4.1374 4.1310 -3.9035 38 1 3.9431 -1.0113 -2.3358 39 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970723506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:40 Heat of formation + Delta-G solvation = 105.985379 kcal Electronic energy + Delta-G solvation = -23791.617658 eV Core-core repulsion = 20185.662235 eV Total energy + Delta-G solvation = -3605.955423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.71178 -39.62967 -38.29589 -36.79862 -34.70558 -33.56265 -32.39062 -31.42264 -29.75229 -27.77958 -27.36773 -25.40261 -24.00797 -22.82727 -21.65035 -21.10851 -20.13959 -19.18096 -17.88413 -17.32797 -16.36981 -16.22400 -16.08153 -15.37373 -15.11201 -14.66378 -14.35280 -13.90449 -13.77008 -13.55235 -13.46303 -13.17393 -13.05033 -13.02326 -12.17374 -11.99151 -11.83888 -11.70022 -11.42080 -11.22439 -10.93337 -10.89643 -10.55159 -10.25378 -10.17450 -9.68642 -9.63470 -9.15917 -9.07314 -9.03944 -8.84603 -8.72183 -7.09903 -6.22056 -3.16016 1.14398 1.24113 1.76276 2.43520 3.34424 3.43925 3.50991 3.51346 3.69323 4.03941 4.23714 4.62939 4.66194 4.78891 4.80311 4.89957 4.93037 4.98346 5.12216 5.20186 5.51610 5.64134 5.66867 5.75930 5.88475 5.98973 6.10541 6.23287 6.30310 6.32499 6.34893 6.50795 6.56658 6.72816 6.95773 6.98963 7.18456 7.73439 8.31081 8.49073 9.04755 9.57287 10.43176 11.28002 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.004074 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.864906 B = 6871.804375 C = 7124.505974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.104 0.896 4 N -0.721 5.721 5 C 0.587 3.413 6 O -0.520 6.520 7 C -0.268 4.268 8 C 0.107 3.893 9 N -0.351 5.351 10 C 0.097 3.903 11 N -0.286 5.286 12 C 0.172 3.828 13 Cl 0.035 6.965 14 C -0.141 4.141 15 C 0.130 3.870 16 N -0.626 5.626 17 C -0.302 4.302 18 H 0.083 0.917 19 C -0.023 4.023 20 N -0.936 5.936 21 Si 1.067 2.933 22 H -0.296 1.296 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.099 3.901 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.391 0.609 30 H 0.192 0.808 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.260 0.740 38 H 0.044 0.956 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.377 -19.762 16.874 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.065 3.935 3 H 0.122 0.878 4 N -0.371 5.371 5 C 0.373 3.627 6 O -0.395 6.395 7 C -0.284 4.284 8 C -0.044 4.044 9 N -0.131 5.131 10 C -0.044 4.044 11 N -0.111 5.111 12 C -0.021 4.021 13 Cl 0.063 6.937 14 C -0.160 4.160 15 C 0.003 3.997 16 N -0.355 5.355 17 C -0.428 4.428 18 H 0.100 0.900 19 C -0.222 4.222 20 N -0.578 5.578 21 Si 0.900 3.100 22 H -0.224 1.224 23 H -0.219 1.219 24 H -0.216 1.216 25 C -0.026 4.026 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.224 0.776 30 H 0.209 0.791 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.568 -18.878 18.647 26.773 hybrid contribution -1.606 -0.378 -1.487 2.221 sum -5.174 -19.255 17.160 26.306 Atomic orbital electron populations 1.22107 0.95446 1.01315 1.02575 1.20630 0.93350 0.98243 0.81305 0.87783 1.45879 1.68175 1.13372 1.09721 1.17063 0.77691 0.86231 0.81729 1.90850 1.49531 1.14735 1.84434 1.20287 1.18817 0.93600 0.95714 1.23130 0.95927 0.96730 0.88585 1.48170 1.48959 1.08963 1.07035 1.22093 1.01111 0.79136 1.02051 1.77243 1.24704 0.90469 1.18732 1.22714 0.98411 0.89555 0.91403 1.98443 1.93461 1.08737 1.93032 1.23201 0.99412 0.98119 0.95314 1.22358 0.92756 0.91898 0.92684 1.46007 1.13201 1.12609 1.63661 1.20140 0.96377 0.88633 1.37661 0.89953 1.25647 0.96070 0.99134 1.01344 1.70908 1.37617 1.15104 1.34159 0.83758 0.75969 0.74450 0.75785 1.22354 1.21915 1.21613 1.22821 0.94106 0.91261 0.94460 0.93061 0.92374 0.91245 0.77612 0.79088 0.89772 0.88596 0.88570 0.90597 0.93224 0.94343 0.92961 0.93840 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.29 37.16 0.35 -1.85 16 2 C 0.17 2.73 2.43 -67.93 -0.16 2.57 16 3 H 0.10 2.25 7.36 -51.93 -0.38 1.86 16 4 N -0.72 -9.72 5.07 -54.89 -0.28 -10.00 16 5 C 0.59 9.34 7.78 -12.54 -0.10 9.24 16 6 O -0.52 -10.49 15.38 5.27 0.08 -10.41 16 7 C -0.27 -3.55 6.13 -105.04 -0.64 -4.20 16 8 C 0.11 0.92 10.99 -16.57 -0.18 0.74 16 9 N -0.35 -3.08 3.98 -67.59 -0.27 -3.34 16 10 C 0.10 0.34 11.44 59.85 0.68 1.02 16 11 N -0.29 -3.64 12.50 33.18 0.41 -3.22 16 12 C 0.17 2.46 7.88 -16.91 -0.13 2.33 16 13 Cl 0.04 0.53 28.00 -51.86 -1.45 -0.93 16 14 C -0.14 -2.23 3.73 -89.97 -0.34 -2.57 16 15 C 0.13 2.44 8.08 -8.52 -0.07 2.37 16 16 N -0.63 -15.30 3.49 -184.63 -0.64 -15.95 16 17 C -0.30 -8.85 11.08 -15.06 -0.17 -9.02 16 18 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 19 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 20 N -0.94 -30.38 13.70 55.49 0.76 -29.62 16 21 Si 1.07 27.76 25.16 -169.99 -4.28 23.48 16 22 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 23 H -0.29 -7.39 6.51 56.52 0.37 -7.02 16 24 H -0.29 -6.87 6.20 56.52 0.35 -6.52 16 25 C 0.10 2.04 5.24 -8.38 -0.04 2.00 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.00 6.50 -51.93 -0.34 0.66 16 29 H 0.39 3.64 7.52 -40.82 -0.31 3.33 16 30 H 0.19 0.71 7.46 -52.48 -0.39 0.32 16 31 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 32 H 0.10 0.30 8.14 -51.92 -0.42 -0.12 16 33 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.90 6.43 -51.93 -0.33 0.57 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.26 8.33 8.73 -40.82 -0.36 7.97 16 38 H 0.04 0.87 7.66 -51.93 -0.40 0.47 16 39 H 0.05 1.18 4.71 -51.93 -0.24 0.93 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -38.66 338.08 -6.49 -45.14 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.01 Total: -2.07 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.90 Total: 1.82 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.02 Total: -62.13 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 27.76 SS G_CDS: -4.28 Total: 23.48 kcal Atomic # 17 Polarization: 0.53 SS G_CDS: -1.45 Total: -0.93 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -38.66 -6.49 -45.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970723506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.129 kcal (2) G-P(sol) polarization free energy of solvation -38.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds