Wall clock time and date at job start Fri Apr 10 2020 18:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 119.99987 * 2 1 4 4 H 1.08000 * 119.99677 * 203.47011 * 3 2 1 5 5 C 1.38807 * 119.99988 * 23.46675 * 3 2 1 6 6 N 1.31616 * 120.00140 * 14.51921 * 5 3 2 7 7 Si 1.86801 * 120.00024 * 194.52129 * 5 3 2 8 8 H 1.48497 * 109.47005 * 359.97438 * 7 5 3 9 9 H 1.48492 * 109.47436 * 120.00024 * 7 5 3 10 10 H 1.48501 * 109.47096 * 240.00093 * 7 5 3 11 11 C 1.46506 * 119.99797 * 180.27362 * 2 1 3 12 12 H 1.08997 * 110.63890 * 180.69978 * 11 2 1 13 13 C 1.55154 * 110.71950 * 57.56117 * 11 2 1 14 14 C 1.54911 * 101.57816 * 206.13380 * 13 11 2 15 15 N 1.47419 * 104.83418 * 37.00851 * 14 13 11 16 16 C 1.34782 * 125.64814 * 155.90603 * 15 14 13 17 17 O 1.21576 * 119.99780 * 179.97438 * 16 15 14 18 18 C 1.47659 * 120.00107 * 359.97438 * 16 15 14 19 19 N 1.31824 * 126.46050 * 359.68784 * 18 16 15 20 20 N 1.28475 * 110.13689 * 179.85578 * 19 18 16 21 21 C 1.46497 * 124.93460 * 180.13366 * 20 19 18 22 22 C 1.35644 * 110.12998 * 0.42050 * 20 19 18 23 23 C 1.35457 * 107.13014 * 359.74822 * 22 20 19 24 24 Cl 1.73602 * 127.23775 * 179.97438 * 23 22 20 25 25 C 1.47320 * 108.73861 * 335.71677 * 15 14 13 26 26 H 1.08999 * 109.47032 * 274.91572 * 1 2 3 27 27 H 1.08996 * 109.47334 * 34.92099 * 1 2 3 28 28 H 1.09004 * 109.46824 * 154.91603 * 1 2 3 29 29 H 0.97007 * 120.00165 * 179.97438 * 6 5 3 30 30 H 1.09001 * 111.00767 * 324.20404 * 13 11 2 31 31 H 1.08998 * 111.00594 * 88.02519 * 13 11 2 32 32 H 1.09009 * 110.36667 * 155.84899 * 14 13 11 33 33 H 1.08999 * 110.36559 * 278.05762 * 14 13 11 34 34 H 1.09002 * 109.47116 * 270.32755 * 21 20 19 35 35 H 1.08999 * 109.47652 * 30.32566 * 21 20 19 36 36 H 1.09004 * 109.47398 * 150.33199 * 21 20 19 37 37 H 1.08001 * 126.43451 * 179.72624 * 22 20 19 38 38 H 1.09001 * 110.06149 * 241.87474 * 25 15 14 39 39 H 1.08997 * 109.85432 * 120.60825 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1627 1.2245 -0.3725 5 6 1.5417 2.3383 0.4787 6 7 0.4360 2.2532 1.1875 7 14 2.2929 4.0099 0.1169 8 1 3.5254 3.8340 -0.6925 9 1 1.3184 4.8377 -0.6380 10 1 2.6327 4.6868 1.3943 11 6 2.1975 -1.2688 -0.0061 12 1 3.2729 -1.0916 0.0072 13 6 1.7978 -2.1275 -1.2349 14 6 2.0902 -3.5596 -0.7218 15 7 1.7030 -3.5374 0.7004 16 6 1.3466 -4.6102 1.4344 17 8 1.0457 -4.4734 2.6044 18 6 1.3216 -5.9515 0.8176 19 7 1.6162 -6.2440 -0.4336 20 7 1.4933 -7.5072 -0.6333 21 6 1.7438 -8.1832 -1.9086 22 6 1.0920 -8.1231 0.5067 23 6 0.9708 -7.1649 1.4565 24 17 0.4864 -7.3798 3.1097 25 6 1.7743 -2.1492 1.1887 26 1 -0.3633 0.0881 1.0239 27 1 -0.3634 0.8426 -0.5883 28 1 -0.3633 -0.9308 -0.4357 29 1 0.0113 3.0586 1.5223 30 1 0.7405 -2.0050 -1.4700 31 1 2.4183 -1.8869 -2.0982 32 1 1.4897 -4.2880 -1.2671 33 1 3.1505 -3.7903 -0.8245 34 1 0.8242 -8.2081 -2.4933 35 1 2.5116 -7.6425 -2.4619 36 1 2.0817 -9.2021 -1.7195 37 1 0.9040 -9.1790 0.6332 38 1 2.5126 -2.0710 1.9867 39 1 0.7965 -1.8344 1.5532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971592531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:59 Heat of formation + Delta-G solvation = 61.939645 kcal Electronic energy + Delta-G solvation = -23792.282038 eV Core-core repulsion = 20184.416649 eV Total energy + Delta-G solvation = -3607.865389 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.74207 -40.86890 -38.85436 -37.50825 -36.53280 -34.43271 -33.41522 -31.81136 -31.22405 -29.70794 -28.23471 -28.01850 -25.57910 -24.12161 -23.14498 -22.47823 -20.92569 -20.49393 -18.94667 -18.49447 -17.82968 -17.57802 -17.20392 -16.60327 -16.34261 -15.63114 -15.55387 -15.15927 -14.96683 -14.61624 -14.40771 -14.13616 -13.80476 -13.70302 -13.48088 -13.32260 -13.21474 -12.81273 -12.78103 -12.62820 -12.44336 -12.34886 -12.21517 -12.05367 -11.81463 -11.71158 -11.37810 -11.10614 -10.63884 -10.37882 -9.91563 -9.61306 -8.80962 -7.82933 -5.33736 0.37238 0.84826 0.96371 1.48469 1.49450 1.60446 1.64304 2.01503 2.20947 2.52335 3.23947 3.30557 3.56557 3.64451 3.80555 3.87109 4.08248 4.29020 4.33820 4.36595 4.46167 4.47586 4.49663 4.66400 4.77650 4.78107 4.80844 4.94908 5.04098 5.17855 5.24044 5.30383 5.41995 5.65357 5.68134 5.70033 6.31588 6.45141 6.65287 7.05689 7.12937 7.83130 8.29275 9.20338 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.025009 B = 0.003210 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.337925 B = 8721.844388 C = 9529.722014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.600 5.600 3 C -0.267 4.267 4 H 0.080 0.920 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.972 3.028 8 H -0.261 1.261 9 H -0.292 1.292 10 H -0.296 1.296 11 C 0.167 3.833 12 H 0.085 0.915 13 C -0.138 4.138 14 C 0.116 3.884 15 N -0.602 5.602 16 C 0.597 3.403 17 O -0.566 6.566 18 C -0.026 4.026 19 N -0.246 5.246 20 N -0.269 5.269 21 C 0.075 3.925 22 C 0.026 3.974 23 C -0.135 4.135 24 Cl -0.026 7.026 25 C 0.101 3.899 26 H -0.002 1.002 27 H 0.019 0.981 28 H 0.029 0.971 29 H 0.248 0.752 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.135 0.865 37 H 0.238 0.762 38 H 0.049 0.951 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 -27.148 -10.086 29.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.321 5.321 3 C -0.396 4.396 4 H 0.098 0.902 5 C -0.248 4.248 6 N -0.585 5.585 7 Si 0.801 3.199 8 H -0.185 1.185 9 H -0.218 1.218 10 H -0.223 1.223 11 C 0.058 3.942 12 H 0.103 0.897 13 C -0.178 4.178 14 C -0.006 4.006 15 N -0.335 5.335 16 C 0.385 3.615 17 O -0.443 6.443 18 C -0.185 4.185 19 N -0.084 5.084 20 N -0.058 5.058 21 C -0.063 4.063 22 C -0.118 4.118 23 C -0.172 4.172 24 Cl 0.003 6.997 25 C -0.024 4.024 26 H 0.016 0.984 27 H 0.037 0.963 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.153 0.847 37 H 0.255 0.745 38 H 0.067 0.933 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.642 -26.584 -10.380 28.770 hybrid contribution -0.417 1.068 1.512 1.897 sum 3.225 -25.516 -8.868 27.205 Atomic orbital electron populations 1.20439 0.83074 0.95821 0.97237 1.44103 1.01832 1.01046 1.85113 1.19665 0.99259 0.86223 1.34502 0.90225 1.25881 0.98752 1.02231 0.97985 1.70274 1.22300 1.27738 1.38193 0.85127 0.78095 0.79691 0.77038 1.18465 1.21848 1.22315 1.21564 0.96274 0.84565 0.91785 0.89701 1.23242 1.02399 0.93292 0.98843 1.22528 1.01351 0.97803 0.78956 1.48461 1.65302 1.06340 1.13404 1.16985 0.77299 0.82388 0.84860 1.90796 1.50935 1.85526 1.17091 1.21494 1.11227 0.93998 0.91763 1.73683 1.19506 0.98973 1.16251 1.46080 1.44406 1.03324 1.11948 1.22812 1.05584 0.99061 0.78808 1.23223 1.03351 1.00996 0.84248 1.21098 1.12688 0.93594 0.89841 1.98352 1.90103 1.96907 1.14370 1.22584 1.00181 0.80534 0.99124 0.98417 0.96261 0.95281 0.94307 0.91699 0.87971 0.88230 0.89852 0.87587 0.87483 0.84698 0.74529 0.93262 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.20 7.64 127.77 0.98 10.17 16 2 N -0.60 -30.21 2.93 -696.15 -2.04 -32.25 16 3 C -0.27 -14.54 9.59 84.03 0.81 -13.74 16 4 H 0.08 4.12 7.86 -2.91 -0.02 4.09 16 5 C -0.05 -3.01 5.07 84.86 0.43 -2.58 16 6 N -0.94 -57.02 10.83 21.65 0.23 -56.78 16 7 Si 0.97 45.23 29.58 68.60 2.03 47.25 16 8 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 9 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 10 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 11 C 0.17 6.77 3.43 46.18 0.16 6.92 16 12 H 0.08 3.33 7.94 -2.39 -0.02 3.31 16 13 C -0.14 -4.34 6.60 31.99 0.21 -4.13 16 14 C 0.12 3.24 6.16 86.86 0.53 3.78 16 15 N -0.60 -21.93 3.33 -814.63 -2.71 -24.65 16 16 C 0.60 22.83 7.85 86.73 0.68 23.51 16 17 O -0.57 -25.66 16.20 -3.95 -0.06 -25.73 16 18 C -0.03 -0.78 6.96 42.45 0.30 -0.48 16 19 N -0.25 -5.59 9.08 -48.17 -0.44 -6.02 16 20 N -0.27 -3.69 3.72 -368.87 -1.37 -5.06 16 21 C 0.07 0.12 11.32 127.77 1.45 1.57 16 22 C 0.03 0.37 11.49 83.46 0.96 1.33 16 23 C -0.13 -3.37 6.80 22.44 0.15 -3.21 16 24 Cl -0.03 -0.70 28.17 -2.72 -0.08 -0.78 16 25 C 0.10 4.28 6.53 86.67 0.57 4.84 16 26 H 0.00 -0.14 7.26 -2.39 -0.02 -0.16 16 27 H 0.02 1.03 7.40 -2.39 -0.02 1.01 16 28 H 0.03 1.30 6.30 -2.38 -0.02 1.29 16 29 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 30 H 0.06 2.20 6.30 -2.39 -0.02 2.18 16 31 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.10 2.53 6.19 -2.38 -0.01 2.52 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.13 -0.70 8.13 -2.39 -0.02 -0.72 16 37 H 0.24 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.04 1.98 6.95 -2.39 -0.02 1.96 16 Total: -1.00 -79.43 335.99 3.85 -75.58 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: 1.07 Total: 0.44 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: 7.22 Total: 27.99 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -6.33 Total: -124.76 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.06 Total: -25.73 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -79.43 3.85 -75.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971592531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.521 kcal (2) G-P(sol) polarization free energy of solvation -79.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds