Wall clock time and date at job start Fri Apr 10 2020 18:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36931 * 119.99817 * 2 1 4 4 H 1.07998 * 120.00261 * 161.07782 * 3 2 1 5 5 C 1.38815 * 120.00101 * 340.79778 * 3 2 1 6 6 N 1.31615 * 119.99945 * 346.78670 * 5 3 2 7 7 Si 1.86801 * 119.99888 * 166.79054 * 5 3 2 8 8 H 1.48497 * 109.47121 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47084 * 120.00288 * 7 5 3 10 10 H 1.48503 * 109.47096 * 239.99788 * 7 5 3 11 11 C 1.46499 * 120.00154 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.64104 * 181.68838 * 11 2 1 13 13 C 1.55148 * 110.72077 * 305.02794 * 11 2 1 14 14 C 1.54913 * 101.58284 * 153.86273 * 13 11 2 15 15 N 1.47419 * 104.83111 * 322.98799 * 14 13 11 16 16 C 1.34779 * 125.65058 * 204.09194 * 15 14 13 17 17 O 1.21576 * 120.00262 * 180.02562 * 16 15 14 18 18 C 1.47672 * 119.99661 * 0.04077 * 16 15 14 19 19 N 1.31824 * 126.46025 * 359.68828 * 18 16 15 20 20 N 1.28475 * 110.13338 * 179.85194 * 19 18 16 21 21 C 1.46499 * 124.93286 * 180.15032 * 20 19 18 22 22 C 1.35638 * 110.13031 * 0.42352 * 20 19 18 23 23 C 1.35469 * 107.13436 * 359.74367 * 22 20 19 24 24 Cl 1.73597 * 127.23899 * 180.02562 * 23 22 20 25 25 C 1.47024 * 108.70435 * 24.12833 * 15 14 13 26 26 H 1.09004 * 109.47268 * 84.81702 * 1 2 3 27 27 H 1.08997 * 109.46963 * 204.81074 * 1 2 3 28 28 H 1.09000 * 109.47184 * 324.81985 * 1 2 3 29 29 H 0.96996 * 120.00040 * 179.97438 * 6 5 3 30 30 H 1.09001 * 111.00446 * 271.93921 * 13 11 2 31 31 H 1.09005 * 111.01065 * 35.79060 * 13 11 2 32 32 H 1.09002 * 110.36334 * 204.14977 * 14 13 11 33 33 H 1.08996 * 110.45620 * 81.87737 * 14 13 11 34 34 H 1.09005 * 109.46558 * 270.31230 * 21 20 19 35 35 H 1.08994 * 109.47203 * 30.30695 * 21 20 19 36 36 H 1.08991 * 109.47038 * 150.31634 * 21 20 19 37 37 H 1.07995 * 126.43677 * 179.71017 * 22 20 19 38 38 H 1.08995 * 109.88250 * 239.51817 * 25 15 14 39 39 H 1.09002 * 109.88094 * 118.35618 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1858 1.2112 0.3033 5 6 1.5135 2.3546 -0.3954 6 7 0.3519 2.2955 -1.0114 7 14 2.3061 4.0111 -0.0533 8 1 3.5997 3.8058 0.6464 9 1 2.5437 4.7206 -1.3361 10 1 1.4047 4.8240 0.8022 11 6 2.1975 -1.2687 0.0006 12 1 3.2727 -1.0916 0.0305 13 6 1.7507 -2.1600 1.1893 14 6 2.0638 -3.5780 0.6497 15 7 1.7324 -3.5173 -0.7855 16 6 1.4056 -4.5697 -1.5615 17 8 1.1505 -4.4015 -2.7382 18 6 1.3571 -5.9272 -0.9822 19 7 1.6137 -6.2548 0.2687 20 7 1.4741 -7.5215 0.4316 21 6 1.6767 -8.2320 1.6967 22 6 1.1177 -8.1063 -0.7392 23 6 1.0324 -7.1228 -1.6669 24 17 0.6125 -7.2928 -3.3427 25 6 1.8182 -2.1186 -1.2305 26 1 -0.3634 0.0928 -1.0235 27 1 -0.3633 -0.9328 0.4312 28 1 -0.3633 0.8400 0.5921 29 1 -0.0929 3.1122 -1.2873 30 1 2.3372 -1.9434 2.0821 31 1 0.6849 -2.0435 1.3861 32 1 1.4430 -4.3203 1.1513 33 1 3.1194 -3.8128 0.7857 34 1 2.7184 -8.5429 1.7759 35 1 1.4306 -7.5712 2.5279 36 1 1.0320 -9.1102 1.7274 37 1 0.9365 -9.1585 -0.9016 38 1 0.8541 -1.7944 -1.6221 39 1 2.5848 -2.0206 -1.9991 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971592532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:03 Heat of formation + Delta-G solvation = 86.994825 kcal Electronic energy + Delta-G solvation = -23792.604387 eV Core-core repulsion = 20185.825472 eV Total energy + Delta-G solvation = -3606.778915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.88862 -39.42621 -37.29077 -36.53084 -34.74169 -33.64920 -31.64233 -30.83682 -29.63667 -28.39278 -27.20082 -26.00668 -24.14072 -22.45269 -22.04369 -21.61808 -19.45968 -19.07254 -17.53475 -16.99604 -16.66115 -16.65242 -15.68233 -15.09829 -14.79128 -14.74059 -14.11649 -13.88107 -13.40569 -13.27962 -13.21355 -13.13026 -12.53955 -12.40975 -12.11589 -11.95888 -11.95696 -11.61517 -11.22623 -10.87519 -10.76350 -10.69203 -10.47614 -10.38007 -10.19579 -9.83784 -9.75981 -9.69330 -9.52508 -8.97734 -8.53773 -8.17604 -6.81379 -5.71718 -3.16270 1.39840 1.71260 1.73841 2.50464 3.27455 3.39583 3.46448 3.48570 3.52149 4.10864 4.37683 4.49398 4.59117 4.63340 4.90509 4.96806 5.14386 5.15627 5.35699 5.43073 5.63956 5.71557 5.75578 5.96112 6.00072 6.13651 6.33923 6.41527 6.47723 6.64213 6.76146 6.89058 6.93811 7.42976 7.52068 7.75380 7.83958 7.87671 8.36836 8.46138 9.22886 9.85809 10.33428 11.32850 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.003205 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.028373 B = 8734.236599 C = 9520.086382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.258 4.258 4 H 0.073 0.927 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.154 4.154 14 C 0.106 3.894 15 N -0.598 5.598 16 C 0.604 3.396 17 O -0.523 6.523 18 C 0.011 3.989 19 N -0.243 5.243 20 N -0.286 5.286 21 C 0.089 3.911 22 C -0.005 4.005 23 C -0.104 4.104 24 Cl -0.009 7.009 25 C 0.088 3.912 26 H 0.029 0.971 27 H 0.001 0.999 28 H 0.048 0.952 29 H 0.252 0.748 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.190 0.810 38 H 0.075 0.925 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 -24.511 6.430 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.308 5.308 3 C -0.387 4.387 4 H 0.090 0.910 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.194 4.194 14 C -0.018 4.018 15 N -0.331 5.331 16 C 0.389 3.611 17 O -0.397 6.397 18 C -0.150 4.150 19 N -0.079 5.079 20 N -0.074 5.074 21 C -0.051 4.051 22 C -0.149 4.149 23 C -0.141 4.141 24 Cl 0.019 6.981 25 C -0.036 4.036 26 H 0.048 0.952 27 H 0.019 0.981 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.207 0.793 38 H 0.093 0.907 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.102 -23.907 6.696 24.916 hybrid contribution 0.071 0.379 -0.743 0.837 sum 2.173 -23.528 5.953 24.367 Atomic orbital electron populations 1.20820 0.82251 0.95622 0.99590 1.43973 1.02026 0.99910 1.84852 1.19309 0.96363 0.84599 1.38468 0.90965 1.24992 0.97574 0.98442 0.98670 1.70113 1.16858 1.26589 1.41496 0.86150 0.78535 0.84116 0.77504 1.20315 1.21746 1.21647 1.21353 0.96343 0.85854 0.90215 0.90333 1.23370 1.02678 0.93492 0.99850 1.22431 1.00257 0.98673 0.80428 1.48340 1.66301 1.07520 1.10988 1.16437 0.78316 0.81190 0.85179 1.90839 1.49802 1.84153 1.14918 1.21996 1.07880 0.95275 0.89855 1.73808 1.19190 0.96124 1.18758 1.45458 1.47890 1.04479 1.09544 1.22230 1.03980 0.97142 0.81735 1.22586 1.07228 0.99896 0.85200 1.20839 1.11103 0.93014 0.89177 1.98366 1.91664 1.97525 1.10531 1.22968 1.02523 0.78256 0.99845 0.95225 0.98078 0.93374 0.93724 0.90509 0.90544 0.89904 0.91922 0.89418 0.88109 0.88431 0.79276 0.90691 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 7.72 59.85 0.46 4.47 16 2 N -0.59 -14.55 2.94 -171.39 -0.50 -15.06 16 3 C -0.26 -7.00 9.66 -15.06 -0.15 -7.14 16 4 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 5 C 0.00 0.04 5.11 -17.43 -0.09 -0.05 16 6 N -0.91 -26.48 10.50 55.49 0.58 -25.90 16 7 Si 0.91 21.79 29.57 -169.99 -5.03 16.76 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 C 0.17 3.51 3.45 -66.10 -0.23 3.28 16 12 H 0.08 1.56 7.91 -51.93 -0.41 1.15 16 13 C -0.15 -2.56 6.59 -24.59 -0.16 -2.72 16 14 C 0.11 1.59 6.15 -2.53 -0.02 1.57 16 15 N -0.60 -10.81 3.33 -171.69 -0.57 -11.38 16 16 C 0.60 11.28 7.85 -12.41 -0.10 11.18 16 17 O -0.52 -11.25 16.20 5.30 0.09 -11.16 16 18 C 0.01 0.17 6.96 -82.76 -0.58 -0.40 16 19 N -0.24 -3.10 9.09 33.42 0.30 -2.79 16 20 N -0.29 -2.56 3.72 -67.95 -0.25 -2.82 16 21 C 0.09 0.31 11.32 59.85 0.68 0.99 16 22 C -0.01 -0.05 11.49 -16.86 -0.19 -0.24 16 23 C -0.10 -1.37 6.80 -39.31 -0.27 -1.64 16 24 Cl -0.01 -0.13 28.17 -51.86 -1.46 -1.59 16 25 C 0.09 1.80 6.50 -3.06 -0.02 1.78 16 26 H 0.03 0.81 7.36 -51.93 -0.38 0.42 16 27 H 0.00 0.02 6.13 -51.93 -0.32 -0.30 16 28 H 0.05 1.28 7.08 -51.93 -0.37 0.91 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.36 6.14 -51.93 -0.32 1.04 16 32 H 0.08 1.17 6.20 -51.93 -0.32 0.84 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.10 0.07 8.13 -51.93 -0.42 -0.35 16 37 H 0.19 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.07 1.73 7.06 -51.93 -0.37 1.36 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -34.14 335.35 -7.44 -41.57 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -4.99 Total: -3.76 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -0.66 Total: 11.07 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.44 Total: -57.95 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.46 Total: -1.59 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.14 -7.44 -41.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971592532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.568 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds