Wall clock time and date at job start Fri Apr 10 2020 18:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36931 * 119.99817 * 2 1 4 4 H 1.07998 * 120.00261 * 161.07782 * 3 2 1 5 5 C 1.38815 * 120.00101 * 340.79778 * 3 2 1 6 6 N 1.31615 * 119.99945 * 346.78670 * 5 3 2 7 7 Si 1.86801 * 119.99888 * 166.79054 * 5 3 2 8 8 H 1.48497 * 109.47121 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47084 * 120.00288 * 7 5 3 10 10 H 1.48503 * 109.47096 * 239.99788 * 7 5 3 11 11 C 1.46499 * 120.00154 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.64104 * 181.68838 * 11 2 1 13 13 C 1.55148 * 110.72077 * 305.02794 * 11 2 1 14 14 C 1.54913 * 101.58284 * 153.86273 * 13 11 2 15 15 N 1.47419 * 104.83111 * 322.98799 * 14 13 11 16 16 C 1.34779 * 125.65058 * 204.09194 * 15 14 13 17 17 O 1.21576 * 120.00262 * 180.02562 * 16 15 14 18 18 C 1.47672 * 119.99661 * 0.04077 * 16 15 14 19 19 N 1.31824 * 126.46025 * 359.68828 * 18 16 15 20 20 N 1.28475 * 110.13338 * 179.85194 * 19 18 16 21 21 C 1.46499 * 124.93286 * 180.15032 * 20 19 18 22 22 C 1.35638 * 110.13031 * 0.42352 * 20 19 18 23 23 C 1.35469 * 107.13436 * 359.74367 * 22 20 19 24 24 Cl 1.73597 * 127.23899 * 180.02562 * 23 22 20 25 25 C 1.47024 * 108.70435 * 24.12833 * 15 14 13 26 26 H 1.09004 * 109.47268 * 84.81702 * 1 2 3 27 27 H 1.08997 * 109.46963 * 204.81074 * 1 2 3 28 28 H 1.09000 * 109.47184 * 324.81985 * 1 2 3 29 29 H 0.96996 * 120.00040 * 179.97438 * 6 5 3 30 30 H 1.09001 * 111.00446 * 271.93921 * 13 11 2 31 31 H 1.09005 * 111.01065 * 35.79060 * 13 11 2 32 32 H 1.09002 * 110.36334 * 204.14977 * 14 13 11 33 33 H 1.08996 * 110.45620 * 81.87737 * 14 13 11 34 34 H 1.09005 * 109.46558 * 270.31230 * 21 20 19 35 35 H 1.08994 * 109.47203 * 30.30695 * 21 20 19 36 36 H 1.08991 * 109.47038 * 150.31634 * 21 20 19 37 37 H 1.07995 * 126.43677 * 179.71017 * 22 20 19 38 38 H 1.08995 * 109.88250 * 239.51817 * 25 15 14 39 39 H 1.09002 * 109.88094 * 118.35618 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1858 1.2112 0.3033 5 6 1.5135 2.3546 -0.3954 6 7 0.3519 2.2955 -1.0114 7 14 2.3061 4.0111 -0.0533 8 1 3.5997 3.8058 0.6464 9 1 2.5437 4.7206 -1.3361 10 1 1.4047 4.8240 0.8022 11 6 2.1975 -1.2687 0.0006 12 1 3.2727 -1.0916 0.0305 13 6 1.7507 -2.1600 1.1893 14 6 2.0638 -3.5780 0.6497 15 7 1.7324 -3.5173 -0.7855 16 6 1.4056 -4.5697 -1.5615 17 8 1.1505 -4.4015 -2.7382 18 6 1.3571 -5.9272 -0.9822 19 7 1.6137 -6.2548 0.2687 20 7 1.4741 -7.5215 0.4316 21 6 1.6767 -8.2320 1.6967 22 6 1.1177 -8.1063 -0.7392 23 6 1.0324 -7.1228 -1.6669 24 17 0.6125 -7.2928 -3.3427 25 6 1.8182 -2.1186 -1.2305 26 1 -0.3634 0.0928 -1.0235 27 1 -0.3633 -0.9328 0.4312 28 1 -0.3633 0.8400 0.5921 29 1 -0.0929 3.1122 -1.2873 30 1 2.3372 -1.9434 2.0821 31 1 0.6849 -2.0435 1.3861 32 1 1.4430 -4.3203 1.1513 33 1 3.1194 -3.8128 0.7857 34 1 2.7184 -8.5429 1.7759 35 1 1.4306 -7.5712 2.5279 36 1 1.0320 -9.1102 1.7274 37 1 0.9365 -9.1585 -0.9016 38 1 0.8541 -1.7944 -1.6221 39 1 2.5848 -2.0206 -1.9991 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971592532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:02 Heat of formation + Delta-G solvation = 64.018259 kcal Electronic energy + Delta-G solvation = -23793.600726 eV Core-core repulsion = 20185.825472 eV Total energy + Delta-G solvation = -3607.775254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.74327 -40.88690 -38.86601 -37.50968 -36.55786 -34.43486 -33.41324 -31.80643 -31.20939 -29.71342 -28.23822 -28.03051 -25.56948 -24.12595 -23.14403 -22.48015 -20.92130 -20.49654 -18.96032 -18.49468 -17.83618 -17.58623 -17.21435 -16.60657 -16.34331 -15.62904 -15.55291 -15.14856 -14.96730 -14.63277 -14.39493 -14.13129 -13.80087 -13.70716 -13.48554 -13.33361 -13.20761 -12.81559 -12.77343 -12.64370 -12.41150 -12.34095 -12.20368 -12.04208 -11.81067 -11.69568 -11.37756 -11.10961 -10.63332 -10.37883 -9.91632 -9.61173 -8.86053 -7.82259 -5.29577 0.37163 0.84786 0.96279 1.48766 1.49544 1.60520 1.64415 2.01770 2.20691 2.52585 3.23849 3.31387 3.56371 3.64396 3.80512 3.86813 4.08055 4.28464 4.33719 4.36387 4.45626 4.47770 4.49584 4.66254 4.77756 4.78637 4.80931 4.94589 5.04455 5.19709 5.25000 5.32899 5.42511 5.64103 5.69935 5.71876 6.30027 6.44966 6.65155 7.05645 7.13429 7.84069 8.28175 9.21508 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.003205 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.028373 B = 8734.236599 C = 9520.086382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.602 5.602 3 C -0.263 4.263 4 H 0.082 0.918 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.974 3.026 8 H -0.261 1.261 9 H -0.297 1.297 10 H -0.292 1.292 11 C 0.167 3.833 12 H 0.086 0.914 13 C -0.138 4.138 14 C 0.116 3.884 15 N -0.602 5.602 16 C 0.597 3.403 17 O -0.566 6.566 18 C -0.026 4.026 19 N -0.246 5.246 20 N -0.269 5.269 21 C 0.075 3.925 22 C 0.026 3.974 23 C -0.135 4.135 24 Cl -0.026 7.026 25 C 0.100 3.900 26 H -0.006 1.006 27 H 0.027 0.973 28 H 0.024 0.976 29 H 0.247 0.753 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.238 0.762 38 H 0.039 0.961 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.459 -27.463 9.273 29.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.323 5.323 3 C -0.393 4.393 4 H 0.100 0.900 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.802 3.198 8 H -0.185 1.185 9 H -0.224 1.224 10 H -0.219 1.219 11 C 0.059 3.941 12 H 0.104 0.896 13 C -0.178 4.178 14 C -0.006 4.006 15 N -0.335 5.335 16 C 0.385 3.615 17 O -0.443 6.443 18 C -0.185 4.185 19 N -0.084 5.084 20 N -0.058 5.058 21 C -0.063 4.063 22 C -0.118 4.118 23 C -0.172 4.172 24 Cl 0.003 6.997 25 C -0.026 4.026 26 H 0.012 0.988 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.152 0.848 37 H 0.255 0.745 38 H 0.057 0.943 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.514 -26.905 9.595 28.780 hybrid contribution -0.321 1.098 -1.544 1.922 sum 3.193 -25.807 8.051 27.222 Atomic orbital electron populations 1.20457 0.82833 0.95821 0.97140 1.44157 1.01993 1.01061 1.85071 1.19729 0.96813 0.85555 1.37234 0.89982 1.25817 0.98312 1.01952 0.99067 1.70301 1.18491 1.26940 1.43179 0.85101 0.78191 0.79646 0.76863 1.18508 1.22416 1.21850 1.21553 0.96367 0.84602 0.91618 0.89569 1.23241 1.02298 0.93241 0.99024 1.22532 1.01807 0.97900 0.78378 1.48386 1.66462 1.06313 1.12292 1.16987 0.77172 0.82562 0.84812 1.90795 1.51568 1.85156 1.16831 1.21493 1.11508 0.93964 0.91523 1.73685 1.19189 0.98264 1.17265 1.46078 1.45041 1.03459 1.11174 1.22810 1.06270 0.97931 0.79241 1.23223 1.03871 1.00985 0.83739 1.21099 1.13252 0.93607 0.89268 1.98352 1.91906 1.97495 1.11977 1.22566 1.00053 0.80331 0.99619 0.98795 0.95425 0.95732 0.94369 0.87915 0.91615 0.88252 0.89823 0.87401 0.87583 0.84789 0.74533 0.94300 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.39 7.72 127.77 0.99 10.38 16 2 N -0.60 -30.30 2.94 -696.16 -2.05 -32.35 16 3 C -0.26 -14.38 9.66 84.04 0.81 -13.56 16 4 H 0.08 4.23 7.81 -2.91 -0.02 4.21 16 5 C -0.06 -3.21 5.11 84.86 0.43 -2.78 16 6 N -0.94 -57.16 10.50 21.65 0.23 -56.93 16 7 Si 0.97 45.34 29.57 68.60 2.03 47.37 16 8 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 11 C 0.17 6.76 3.45 46.18 0.16 6.92 16 12 H 0.09 3.34 7.91 -2.39 -0.02 3.32 16 13 C -0.14 -4.34 6.59 31.98 0.21 -4.13 16 14 C 0.12 3.24 6.15 86.86 0.53 3.77 16 15 N -0.60 -21.88 3.33 -815.38 -2.71 -24.59 16 16 C 0.60 22.80 7.85 86.74 0.68 23.48 16 17 O -0.57 -25.64 16.20 -3.96 -0.06 -25.70 16 18 C -0.03 -0.78 6.96 42.45 0.30 -0.48 16 19 N -0.25 -5.58 9.09 -48.17 -0.44 -6.01 16 20 N -0.27 -3.68 3.72 -368.88 -1.37 -5.05 16 21 C 0.07 0.12 11.32 127.77 1.45 1.56 16 22 C 0.03 0.37 11.49 83.46 0.96 1.33 16 23 C -0.13 -3.36 6.80 22.45 0.15 -3.21 16 24 Cl -0.03 -0.70 28.17 -2.72 -0.08 -0.78 16 25 C 0.10 4.21 6.50 86.73 0.56 4.78 16 26 H -0.01 -0.37 7.36 -2.39 -0.02 -0.38 16 27 H 0.03 1.24 6.13 -2.39 -0.01 1.23 16 28 H 0.02 1.34 7.08 -2.39 -0.02 1.32 16 29 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 30 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.07 2.23 6.14 -2.38 -0.01 2.21 16 32 H 0.10 2.52 6.20 -2.39 -0.01 2.50 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.11 -0.14 8.14 -2.38 -0.02 -0.16 16 35 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.13 -0.67 8.13 -2.39 -0.02 -0.69 16 37 H 0.24 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.04 1.91 7.06 -2.39 -0.02 1.89 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -79.48 335.35 3.86 -75.62 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: 1.07 Total: 0.36 kcal Atomic # 6 Polarization: 20.82 SS G_CDS: 7.23 Total: 28.06 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -6.34 Total: -124.93 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.06 Total: -25.70 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -79.48 3.86 -75.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971592532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.642 kcal (2) G-P(sol) polarization free energy of solvation -79.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds