Wall clock time and date at job start Fri Apr 10 2020 18:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 119.99932 * 2 1 4 4 H 1.08002 * 119.99898 * 203.30817 * 3 2 1 5 5 C 1.38810 * 120.00373 * 23.30431 * 3 2 1 6 6 N 1.31617 * 119.99775 * 14.01054 * 5 3 2 7 7 Si 1.86796 * 120.00252 * 194.01101 * 5 3 2 8 8 H 1.48503 * 109.47260 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47334 * 120.00082 * 7 5 3 10 10 H 1.48500 * 109.47242 * 240.00199 * 7 5 3 11 11 C 1.46497 * 119.99732 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.91684 * 182.45081 * 11 2 1 13 13 C 1.55160 * 111.00399 * 306.34358 * 11 2 1 14 14 C 1.54337 * 103.02088 * 153.38310 * 13 11 2 15 15 N 1.47022 * 107.26516 * 338.14574 * 14 13 11 16 16 C 1.34780 * 125.64879 * 178.84763 * 15 14 13 17 17 O 1.21577 * 119.99841 * 179.69517 * 16 15 14 18 18 C 1.47709 * 119.99924 * 359.69151 * 16 15 14 19 19 C 1.41500 * 126.50898 * 179.97438 * 18 16 15 20 20 C 1.35513 * 105.48074 * 179.73979 * 19 18 16 21 21 Cl 1.73600 * 126.40464 * 180.26205 * 20 19 18 22 22 N 1.35071 * 107.19731 * 0.26563 * 20 19 18 23 23 C 1.46499 * 124.88106 * 180.02562 * 22 20 19 24 24 N 1.28459 * 110.23194 * 359.97438 * 22 20 19 25 25 C 1.47426 * 108.70294 * 358.58318 * 15 14 13 26 26 H 1.09001 * 109.47266 * 275.17563 * 1 2 3 27 27 H 1.09007 * 109.47402 * 35.17109 * 1 2 3 28 28 H 1.08998 * 109.47443 * 155.17114 * 1 2 3 29 29 H 0.97000 * 119.99801 * 179.97438 * 6 5 3 30 30 H 1.08996 * 110.72356 * 271.94410 * 13 11 2 31 31 H 1.09007 * 110.71842 * 35.04456 * 13 11 2 32 32 H 1.08995 * 109.99571 * 218.66973 * 14 13 11 33 33 H 1.08998 * 109.78109 * 97.49903 * 14 13 11 34 34 H 1.08002 * 127.26247 * 0.02562 * 19 18 16 35 35 H 1.08999 * 109.47402 * 89.99730 * 23 22 20 36 36 H 1.09003 * 109.46931 * 209.99631 * 23 22 20 37 37 H 1.08997 * 109.47554 * 329.99314 * 23 22 20 38 38 H 1.09003 * 110.36976 * 143.19418 * 25 15 14 39 39 H 1.08999 * 110.36970 * 265.40445 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1635 1.2241 -0.3701 5 6 1.5406 2.3390 0.4756 6 7 0.4277 2.2556 1.1732 7 14 2.3004 4.0091 0.1254 8 1 3.5403 3.8315 -0.6724 9 1 1.3357 4.8419 -0.6371 10 1 2.6296 4.6819 1.4077 11 6 2.1974 -1.2687 -0.0006 12 1 3.2729 -1.0972 0.0430 13 6 1.7320 -2.1801 1.1658 14 6 2.0325 -3.5994 0.6392 15 7 2.0990 -3.5158 -0.8271 16 6 2.3640 -4.5409 -1.6611 17 8 2.3882 -4.3564 -2.8625 18 6 2.6252 -5.8884 -1.1154 19 6 2.9156 -7.0564 -1.8596 20 6 3.0845 -8.0380 -0.9408 21 17 3.4685 -9.6993 -1.2668 22 7 2.8981 -7.4824 0.2762 23 6 2.9911 -8.2020 1.5488 24 7 2.6286 -6.2321 0.1571 25 6 1.8215 -2.1264 -1.2345 26 1 -0.3634 0.0927 1.0235 27 1 -0.3634 0.8401 -0.5920 28 1 -0.3634 -0.9326 -0.4315 29 1 0.0023 3.0614 1.5059 30 1 2.3046 -1.9723 2.0697 31 1 0.6648 -2.0561 1.3498 32 1 1.2372 -4.2831 0.9359 33 1 2.9877 -3.9449 1.0345 34 1 2.9918 -7.1455 -2.9332 35 1 4.0162 -8.1587 1.9167 36 1 2.3240 -7.7403 2.2769 37 1 2.7021 -9.2424 1.4000 38 1 2.4387 -1.8514 -2.0898 39 1 0.7654 -2.0054 -1.4752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971904564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:16 Heat of formation + Delta-G solvation = 80.598885 kcal Electronic energy + Delta-G solvation = -23553.008595 eV Core-core repulsion = 19945.952331 eV Total energy + Delta-G solvation = -3607.056264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.98065 -39.52749 -37.36048 -37.27045 -34.79134 -33.84607 -31.69217 -30.76619 -29.72795 -28.44669 -27.25876 -26.03245 -24.28061 -22.53975 -22.13550 -21.53031 -19.46991 -19.24387 -17.68390 -17.04345 -16.80564 -16.71438 -15.78035 -15.16973 -14.66394 -14.45235 -14.41560 -13.98395 -13.39966 -13.31236 -13.24726 -13.10562 -12.66484 -12.50886 -12.44462 -12.28199 -12.08057 -11.86332 -11.35484 -10.98570 -10.92333 -10.71922 -10.48182 -10.45255 -10.19700 -9.99317 -9.86399 -9.77120 -9.45869 -9.30051 -8.58830 -8.29611 -6.78835 -5.75466 -3.22715 1.12348 1.29945 1.70396 2.18150 3.20786 3.37749 3.43607 3.45695 3.47951 3.95913 4.47669 4.54138 4.63037 4.83053 4.92166 5.05185 5.12867 5.29243 5.37051 5.47956 5.63058 5.67816 5.85093 5.93358 5.99596 6.09309 6.18904 6.34323 6.45776 6.60493 6.67801 6.79473 6.92152 7.34506 7.46572 7.70409 7.77337 7.79872 8.31623 8.37309 9.19822 9.82305 10.31158 11.29090 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.035898 B = 0.002700 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.792471 B =10369.634838 C =10727.662885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.904 5.904 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.152 4.152 14 C 0.113 3.887 15 N -0.597 5.597 16 C 0.611 3.389 17 O -0.537 6.537 18 C 0.004 3.996 19 C -0.151 4.151 20 C 0.045 3.955 21 Cl 0.000 7.000 22 N -0.278 5.278 23 C 0.081 3.919 24 N -0.232 5.232 25 C 0.086 3.914 26 H 0.034 0.966 27 H 0.041 0.959 28 H 0.003 0.997 29 H 0.252 0.748 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.173 0.827 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 -24.112 1.246 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.192 4.192 14 C -0.011 4.011 15 N -0.330 5.330 16 C 0.397 3.603 17 O -0.413 6.413 18 C -0.156 4.156 19 C -0.180 4.180 20 C -0.104 4.104 21 Cl 0.028 6.972 22 N -0.068 5.068 23 C -0.059 4.059 24 N -0.069 5.069 25 C -0.038 4.038 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.021 0.979 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.191 0.809 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.205 -23.669 1.791 24.107 hybrid contribution 0.431 0.225 -0.680 0.836 sum 4.636 -23.444 1.111 23.924 Atomic orbital electron populations 1.20817 0.82482 0.95656 0.99669 1.43818 1.01855 0.99868 1.84960 1.19261 0.98710 0.85274 1.35583 0.91187 1.25023 0.97969 0.98593 0.97848 1.70080 1.20230 1.27244 1.37302 0.86174 0.78585 0.84175 0.77530 1.20226 1.21570 1.21752 1.21411 0.96443 0.85805 0.90062 0.90296 1.23253 1.02778 0.92796 1.00416 1.22071 1.01370 0.98505 0.79116 1.48284 1.67494 1.09370 1.07848 1.16370 0.77624 0.81187 0.85141 1.90801 1.53374 1.83181 1.13911 1.21861 1.08659 0.95904 0.89155 1.21458 1.06532 0.89329 1.00715 1.21898 1.12411 0.88769 0.87371 1.98398 1.92744 1.11902 1.94197 1.45567 1.49026 1.05757 1.06490 1.22286 1.05183 0.96835 0.81605 1.73902 1.17675 0.94543 1.20765 1.23078 1.01440 0.78710 1.00582 0.94770 0.94004 0.97887 0.93746 0.90547 0.90622 0.91760 0.91473 0.80946 0.89125 0.87694 0.88563 0.90677 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 7.61 59.85 0.46 4.24 16 2 N -0.58 -14.26 2.96 -171.04 -0.51 -14.76 16 3 C -0.26 -6.97 9.60 -15.06 -0.14 -7.12 16 4 H 0.07 1.85 7.86 -52.49 -0.41 1.44 16 5 C 0.00 0.12 5.08 -17.43 -0.09 0.03 16 6 N -0.90 -25.85 10.79 55.49 0.60 -25.25 16 7 Si 0.91 21.63 29.58 -169.99 -5.03 16.60 16 8 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 C 0.17 3.49 3.54 -65.78 -0.23 3.25 16 12 H 0.08 1.61 7.96 -51.93 -0.41 1.19 16 13 C -0.15 -2.62 6.51 -24.89 -0.16 -2.78 16 14 C 0.11 1.69 5.54 -3.06 -0.02 1.68 16 15 N -0.60 -10.23 3.33 -171.68 -0.57 -10.80 16 16 C 0.61 10.65 7.86 -12.39 -0.10 10.55 16 17 O -0.54 -10.78 17.18 5.30 0.09 -10.68 16 18 C 0.00 0.06 6.98 -82.77 -0.58 -0.52 16 19 C -0.15 -1.87 10.79 -39.31 -0.42 -2.30 16 20 C 0.05 0.46 7.44 -17.10 -0.13 0.34 16 21 Cl 0.00 0.00 28.67 -51.86 -1.49 -1.49 16 22 N -0.28 -2.76 3.70 -64.87 -0.24 -3.00 16 23 C 0.08 0.42 11.14 59.85 0.67 1.08 16 24 N -0.23 -2.96 9.50 33.42 0.32 -2.64 16 25 C 0.09 1.62 6.46 -2.53 -0.02 1.61 16 26 H 0.03 0.88 7.33 -51.93 -0.38 0.50 16 27 H 0.04 1.08 7.39 -51.93 -0.38 0.70 16 28 H 0.00 0.06 6.34 -51.93 -0.33 -0.27 16 29 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.37 7.08 -51.93 -0.37 1.01 16 32 H 0.06 0.91 7.78 -51.93 -0.40 0.51 16 33 H 0.07 0.95 7.65 -51.93 -0.40 0.55 16 34 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.32 7.71 -51.93 -0.40 -0.08 16 38 H 0.07 1.48 8.04 -51.93 -0.42 1.06 16 39 H 0.07 1.39 6.34 -51.93 -0.33 1.07 16 LS Contribution 337.83 15.07 5.09 5.09 Total: -1.00 -31.90 337.83 -7.56 -39.46 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.06 Total: -2.59 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -0.77 Total: 10.07 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.40 Total: -56.46 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.49 Total: -1.49 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.90 -7.56 -39.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971904564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.054 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds