Wall clock time and date at job start Fri Apr 10 2020 18:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 119.99932 * 2 1 4 4 H 1.08002 * 119.99898 * 203.30817 * 3 2 1 5 5 C 1.38810 * 120.00373 * 23.30431 * 3 2 1 6 6 N 1.31617 * 119.99775 * 14.01054 * 5 3 2 7 7 Si 1.86796 * 120.00252 * 194.01101 * 5 3 2 8 8 H 1.48503 * 109.47260 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47334 * 120.00082 * 7 5 3 10 10 H 1.48500 * 109.47242 * 240.00199 * 7 5 3 11 11 C 1.46497 * 119.99732 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.91684 * 182.45081 * 11 2 1 13 13 C 1.55160 * 111.00399 * 306.34358 * 11 2 1 14 14 C 1.54337 * 103.02088 * 153.38310 * 13 11 2 15 15 N 1.47022 * 107.26516 * 338.14574 * 14 13 11 16 16 C 1.34780 * 125.64879 * 178.84763 * 15 14 13 17 17 O 1.21577 * 119.99841 * 179.69517 * 16 15 14 18 18 C 1.47709 * 119.99924 * 359.69151 * 16 15 14 19 19 C 1.41500 * 126.50898 * 179.97438 * 18 16 15 20 20 C 1.35513 * 105.48074 * 179.73979 * 19 18 16 21 21 Cl 1.73600 * 126.40464 * 180.26205 * 20 19 18 22 22 N 1.35071 * 107.19731 * 0.26563 * 20 19 18 23 23 C 1.46499 * 124.88106 * 180.02562 * 22 20 19 24 24 N 1.28459 * 110.23194 * 359.97438 * 22 20 19 25 25 C 1.47426 * 108.70294 * 358.58318 * 15 14 13 26 26 H 1.09001 * 109.47266 * 275.17563 * 1 2 3 27 27 H 1.09007 * 109.47402 * 35.17109 * 1 2 3 28 28 H 1.08998 * 109.47443 * 155.17114 * 1 2 3 29 29 H 0.97000 * 119.99801 * 179.97438 * 6 5 3 30 30 H 1.08996 * 110.72356 * 271.94410 * 13 11 2 31 31 H 1.09007 * 110.71842 * 35.04456 * 13 11 2 32 32 H 1.08995 * 109.99571 * 218.66973 * 14 13 11 33 33 H 1.08998 * 109.78109 * 97.49903 * 14 13 11 34 34 H 1.08002 * 127.26247 * 0.02562 * 19 18 16 35 35 H 1.08999 * 109.47402 * 89.99730 * 23 22 20 36 36 H 1.09003 * 109.46931 * 209.99631 * 23 22 20 37 37 H 1.08997 * 109.47554 * 329.99314 * 23 22 20 38 38 H 1.09003 * 110.36976 * 143.19418 * 25 15 14 39 39 H 1.08999 * 110.36970 * 265.40445 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1635 1.2241 -0.3701 5 6 1.5406 2.3390 0.4756 6 7 0.4277 2.2556 1.1732 7 14 2.3004 4.0091 0.1254 8 1 3.5403 3.8315 -0.6724 9 1 1.3357 4.8419 -0.6371 10 1 2.6296 4.6819 1.4077 11 6 2.1974 -1.2687 -0.0006 12 1 3.2729 -1.0972 0.0430 13 6 1.7320 -2.1801 1.1658 14 6 2.0325 -3.5994 0.6392 15 7 2.0990 -3.5158 -0.8271 16 6 2.3640 -4.5409 -1.6611 17 8 2.3882 -4.3564 -2.8625 18 6 2.6252 -5.8884 -1.1154 19 6 2.9156 -7.0564 -1.8596 20 6 3.0845 -8.0380 -0.9408 21 17 3.4685 -9.6993 -1.2668 22 7 2.8981 -7.4824 0.2762 23 6 2.9911 -8.2020 1.5488 24 7 2.6286 -6.2321 0.1571 25 6 1.8215 -2.1264 -1.2345 26 1 -0.3634 0.0927 1.0235 27 1 -0.3634 0.8401 -0.5920 28 1 -0.3634 -0.9326 -0.4315 29 1 0.0023 3.0614 1.5059 30 1 2.3046 -1.9723 2.0697 31 1 0.6648 -2.0561 1.3498 32 1 1.2372 -4.2831 0.9359 33 1 2.9877 -3.9449 1.0345 34 1 2.9918 -7.1455 -2.9332 35 1 4.0162 -8.1587 1.9167 36 1 2.3240 -7.7403 2.2769 37 1 2.7021 -9.2424 1.4000 38 1 2.4387 -1.8514 -2.0898 39 1 0.7654 -2.0054 -1.4752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971904564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:15 Heat of formation + Delta-G solvation = 60.557487 kcal Electronic energy + Delta-G solvation = -23553.877655 eV Core-core repulsion = 19945.952331 eV Total energy + Delta-G solvation = -3607.925324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.86251 -40.93401 -38.88025 -37.99155 -36.57159 -34.65665 -33.45919 -31.79950 -31.24673 -29.72964 -28.30102 -28.02465 -25.67874 -24.16894 -23.24979 -22.46923 -20.98113 -20.53647 -18.94203 -18.71962 -17.83522 -17.73713 -17.34853 -16.52097 -16.33993 -15.67667 -15.38861 -15.18512 -14.96688 -14.81908 -14.39619 -14.23593 -13.91366 -13.77502 -13.52707 -13.45106 -13.13461 -13.00580 -12.84445 -12.77624 -12.48153 -12.37390 -12.15973 -12.06552 -11.92209 -11.77489 -11.46057 -11.32022 -10.64681 -10.35237 -10.14117 -9.70408 -8.78344 -7.82989 -5.32255 0.32213 0.36347 0.74094 1.42723 1.47748 1.50161 1.59945 1.96578 2.19536 2.52316 3.05231 3.29456 3.53903 3.61761 3.93879 4.00409 4.13056 4.21353 4.30082 4.32651 4.34662 4.42129 4.44322 4.62722 4.69657 4.82215 4.91614 5.00824 5.01193 5.20125 5.22262 5.29740 5.39152 5.44297 5.66181 5.71815 6.32463 6.39723 6.56792 6.99387 7.14471 7.84101 8.28673 9.19982 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.035898 B = 0.002700 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.792471 B =10369.634838 C =10727.662885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.600 5.600 3 C -0.267 4.267 4 H 0.071 0.929 5 C -0.047 4.047 6 N -0.933 5.933 7 Si 0.968 3.032 8 H -0.268 1.268 9 H -0.292 1.292 10 H -0.290 1.290 11 C 0.168 3.832 12 H 0.075 0.925 13 C -0.140 4.140 14 C 0.126 3.874 15 N -0.600 5.600 16 C 0.610 3.390 17 O -0.573 6.573 18 C -0.025 4.025 19 C -0.166 4.166 20 C 0.054 3.946 21 Cl 0.028 6.972 22 N -0.264 5.264 23 C 0.066 3.934 24 N -0.234 5.234 25 C 0.098 3.902 26 H 0.013 0.987 27 H 0.013 0.987 28 H 0.029 0.971 29 H 0.249 0.751 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.175 0.825 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.061 0.939 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 -26.522 2.235 27.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.321 5.321 3 C -0.397 4.397 4 H 0.088 0.912 5 C -0.243 4.243 6 N -0.579 5.579 7 Si 0.796 3.204 8 H -0.193 1.193 9 H -0.219 1.219 10 H -0.217 1.217 11 C 0.059 3.941 12 H 0.094 0.906 13 C -0.180 4.180 14 C 0.004 3.996 15 N -0.332 5.332 16 C 0.398 3.602 17 O -0.452 6.452 18 C -0.183 4.183 19 C -0.195 4.195 20 C -0.097 4.097 21 Cl 0.056 6.944 22 N -0.056 5.056 23 C -0.071 4.071 24 N -0.073 5.073 25 C -0.027 4.027 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.193 0.807 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.230 -26.125 2.797 26.790 hybrid contribution 0.169 0.773 -0.960 1.244 sum 5.399 -25.352 1.837 25.985 Atomic orbital electron populations 1.20526 0.82606 0.95732 0.98013 1.43962 1.02042 1.00780 1.85327 1.19551 0.98821 0.86532 1.34790 0.91170 1.25738 0.98677 1.01698 0.98180 1.70220 1.21500 1.27674 1.38499 0.85203 0.77928 0.80117 0.77157 1.19277 1.21928 1.21723 1.21508 0.95905 0.84843 0.91852 0.90640 1.23093 1.02196 0.93275 0.99455 1.22043 1.02748 0.97159 0.77642 1.48305 1.67630 1.08544 1.08748 1.16752 0.76611 0.82146 0.84702 1.90767 1.54919 1.84010 1.15459 1.21420 1.11562 0.94916 0.90383 1.21563 1.07231 0.89346 1.01352 1.21901 1.11023 0.89746 0.87037 1.98415 1.92432 1.09445 1.94099 1.46015 1.46690 1.05015 1.07893 1.22788 1.06917 0.97593 0.79827 1.73800 1.17759 0.96026 1.19735 1.22727 1.00509 0.79963 0.99473 0.96825 0.96798 0.95254 0.94173 0.89712 0.91476 0.90208 0.89901 0.80741 0.87175 0.86465 0.86358 0.92016 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.59 7.61 127.77 0.97 9.56 16 2 N -0.60 -29.60 2.96 -695.04 -2.05 -31.65 16 3 C -0.27 -14.52 9.60 84.03 0.81 -13.71 16 4 H 0.07 3.73 7.86 -2.91 -0.02 3.71 16 5 C -0.05 -2.62 5.08 84.86 0.43 -2.19 16 6 N -0.93 -54.32 10.79 21.65 0.23 -54.09 16 7 Si 0.97 44.90 29.58 68.60 2.03 46.93 16 8 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 9 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 11 C 0.17 6.74 3.54 46.38 0.16 6.91 16 12 H 0.08 3.07 7.96 -2.39 -0.02 3.05 16 13 C -0.14 -4.67 6.51 31.79 0.21 -4.46 16 14 C 0.13 3.57 5.54 86.73 0.48 4.05 16 15 N -0.60 -20.23 3.33 -815.32 -2.71 -22.94 16 16 C 0.61 21.20 7.86 86.75 0.68 21.88 16 17 O -0.57 -23.47 17.18 -3.96 -0.07 -23.54 16 18 C -0.03 -0.71 6.98 42.46 0.30 -0.41 16 19 C -0.17 -3.91 10.79 22.44 0.24 -3.67 16 20 C 0.05 0.97 7.44 83.56 0.62 1.59 16 21 Cl 0.03 0.34 28.67 -2.72 -0.08 0.27 16 22 N -0.26 -4.47 3.70 -359.16 -1.33 -5.80 16 23 C 0.07 0.43 11.14 127.77 1.42 1.85 16 24 N -0.23 -5.44 9.50 -48.18 -0.46 -5.90 16 25 C 0.10 3.73 6.46 86.85 0.56 4.29 16 26 H 0.01 0.71 7.33 -2.39 -0.02 0.70 16 27 H 0.01 0.72 7.39 -2.38 -0.02 0.70 16 28 H 0.03 1.24 6.34 -2.39 -0.02 1.23 16 29 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.07 2.37 7.08 -2.38 -0.02 2.35 16 32 H 0.08 2.07 7.78 -2.39 -0.02 2.05 16 33 H 0.08 2.13 7.65 -2.39 -0.02 2.11 16 34 H 0.18 3.86 8.06 -2.91 -0.02 3.84 16 35 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.12 0.27 7.71 -2.39 -0.02 0.25 16 38 H 0.06 2.49 8.04 -2.39 -0.02 2.47 16 39 H 0.06 2.46 6.34 -2.39 -0.02 2.45 16 Total: -1.00 -69.61 337.83 3.52 -66.09 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.07 Total: 4.94 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 6.89 Total: 25.70 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -6.32 Total: -120.38 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.07 Total: -23.54 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -0.08 Total: 0.27 kcal Total: -69.61 3.52 -66.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971904564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.649 kcal (2) G-P(sol) polarization free energy of solvation -69.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds