Wall clock time and date at job start Fri Apr 10 2020 18:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39925 * 125.74857 * 2 1 4 4 C 1.30415 * 108.95760 * 180.02562 * 3 2 1 5 5 C 1.41337 * 108.04949 * 359.97438 * 4 3 2 6 6 C 1.47301 * 126.43856 * 180.02562 * 5 4 3 7 7 O 1.21618 * 120.00389 * 126.95514 * 6 5 4 8 8 N 1.34774 * 119.99505 * 306.95523 * 6 5 4 9 9 C 1.48216 * 119.97031 * 184.98736 * 8 6 5 10 10 C 1.47141 * 110.34557 * 102.46602 * 9 8 6 11 11 C 1.53796 * 111.83701 * 58.29805 * 10 9 8 12 12 N 1.43467 * 107.96171 * 281.66874 * 11 10 9 13 13 C 1.36936 * 118.94455 * 273.63263 * 12 11 10 14 14 H 1.07995 * 119.99804 * 32.87459 * 13 12 11 15 15 C 1.38808 * 119.99836 * 212.88211 * 13 12 11 16 16 N 1.31624 * 120.00096 * 358.49217 * 15 13 12 17 17 Si 1.86801 * 119.99866 * 178.49457 * 15 13 12 18 18 H 1.48497 * 109.47033 * 89.99651 * 17 15 13 19 19 H 1.48497 * 109.47200 * 209.99712 * 17 15 13 20 20 H 1.48503 * 109.47126 * 329.99908 * 17 15 13 21 21 C 1.48860 * 122.11268 * 93.65694 * 12 11 10 22 22 C 1.43620 * 119.97596 * 4.71428 * 8 6 5 23 23 C 1.34345 * 125.74632 * 180.02562 * 2 1 3 24 24 Cl 1.73597 * 126.32370 * 0.25815 * 23 2 1 25 25 H 1.09004 * 109.46799 * 269.99885 * 1 2 3 26 26 H 1.08999 * 109.47368 * 29.99716 * 1 2 3 27 27 H 1.08994 * 109.47313 * 150.00205 * 1 2 3 28 28 H 1.08000 * 125.97660 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.32912 * 222.73673 * 9 8 6 30 30 H 1.09008 * 109.32336 * 342.37218 * 9 8 6 31 31 H 1.08998 * 109.00676 * 178.90769 * 10 9 8 32 32 H 1.09001 * 109.00291 * 297.76553 * 10 9 8 33 33 H 1.08991 * 109.76599 * 41.29054 * 11 10 9 34 34 H 1.09001 * 109.75634 * 162.00847 * 11 10 9 35 35 H 0.97001 * 119.99407 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.48374 * 80.58251 * 21 12 11 37 37 H 1.09001 * 109.47638 * 200.61043 * 21 12 11 38 38 H 1.08997 * 108.87121 * 31.46903 * 22 8 6 39 39 H 1.09003 * 108.87778 * 149.90570 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5311 0.7589 -0.0006 5 6 3.5621 -0.6542 -0.0003 6 6 4.7661 -1.5028 -0.0003 7 8 4.8984 -2.3706 0.8415 8 7 5.7210 -1.3176 -0.9331 9 6 6.8782 -2.2412 -1.0015 10 6 6.7067 -3.1951 -2.1086 11 6 6.5513 -2.4799 -3.4612 12 7 5.2053 -1.9916 -3.5515 13 6 4.2290 -2.8242 -4.0299 14 1 4.2854 -3.8862 -3.8421 15 6 3.1672 -2.3031 -4.7563 16 7 3.0829 -1.0054 -4.9599 17 14 1.8576 -3.4435 -5.4448 18 1 0.7705 -3.6085 -4.4467 19 1 1.3003 -2.8614 -6.6920 20 1 2.4610 -4.7673 -5.7428 21 6 4.8360 -0.6088 -3.1423 22 6 5.6135 -0.2290 -1.8637 23 6 2.2499 -1.0904 -0.0005 24 17 1.7155 -2.7420 -0.0075 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 4.3909 1.4123 -0.0003 29 1 7.7903 -1.6656 -1.1594 30 1 6.9568 -2.7912 -0.0636 31 1 7.5770 -3.8499 -2.1511 32 1 5.8179 -3.7982 -1.9229 33 1 7.2506 -1.6459 -3.5196 34 1 6.7451 -3.1809 -4.2731 35 1 2.3406 -0.6414 -5.4672 36 1 5.0878 0.0867 -3.9429 37 1 3.7653 -0.5623 -2.9437 38 1 5.1004 0.6008 -1.3778 39 1 6.6157 0.0948 -2.1449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981459530.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:42 Heat of formation + Delta-G solvation = 61.798407 kcal Electronic energy + Delta-G solvation = -25462.597208 eV Core-core repulsion = 21854.725695 eV Total energy + Delta-G solvation = -3607.871514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.54148 -40.70525 -38.44281 -38.02773 -35.86327 -34.82946 -33.92446 -32.69872 -31.24335 -29.22006 -28.31191 -26.95113 -25.41766 -24.43746 -22.50732 -22.30879 -21.39419 -20.20759 -18.88122 -18.17646 -17.60613 -17.39153 -16.91517 -16.63008 -16.01366 -15.69093 -15.54442 -15.47788 -14.82085 -14.59045 -14.41525 -13.92604 -13.89218 -13.76271 -13.60526 -13.28274 -13.14262 -13.00627 -12.83136 -12.79862 -12.48769 -12.31896 -12.03419 -11.99038 -11.65151 -11.60497 -11.38274 -10.87870 -10.49764 -10.44813 -9.79336 -9.37935 -8.46903 -7.81480 -5.32026 0.21562 0.35603 1.14995 1.38846 1.41477 1.48684 1.52130 1.81497 2.43746 2.51015 3.32204 3.35205 3.77691 3.85972 3.91063 4.14458 4.26979 4.29825 4.32842 4.39512 4.47309 4.53590 4.60256 4.68593 4.82157 4.94376 5.00858 5.12184 5.21257 5.32534 5.40509 5.49001 5.55822 5.67441 5.83264 5.89983 6.30133 6.48680 6.59140 7.25222 7.28203 8.01849 8.41925 9.21184 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.010808 B = 0.008311 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.143090 B = 3368.362748 C = 4585.616371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.354 5.354 3 N -0.281 5.281 4 C 0.092 3.908 5 C -0.274 4.274 6 C 0.597 3.403 7 O -0.579 6.579 8 N -0.576 5.576 9 C 0.127 3.873 10 C -0.156 4.156 11 C 0.159 3.841 12 N -0.605 5.605 13 C -0.252 4.252 14 H 0.046 0.954 15 C -0.031 4.031 16 N -0.926 5.926 17 Si 0.941 3.059 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.275 1.275 21 C 0.180 3.820 22 C 0.084 3.916 23 C 0.161 3.839 24 Cl 0.010 6.990 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.231 0.769 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.035 0.965 35 H 0.246 0.754 36 H 0.016 0.984 37 H 0.039 0.961 38 H 0.089 0.911 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 4.508 9.723 10.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.136 5.136 3 N -0.103 5.103 4 C -0.094 4.094 5 C -0.290 4.290 6 C 0.385 3.615 7 O -0.460 6.460 8 N -0.305 5.305 9 C 0.006 3.994 10 C -0.197 4.197 11 C 0.032 3.968 12 N -0.327 5.327 13 C -0.383 4.383 14 H 0.064 0.936 15 C -0.227 4.227 16 N -0.572 5.572 17 Si 0.770 3.230 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.200 1.200 21 C 0.055 3.945 22 C -0.041 4.041 23 C 0.003 3.997 24 Cl 0.038 6.962 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.247 0.753 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.034 0.966 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.035 5.018 10.044 11.228 hybrid contribution -0.813 -1.713 -0.855 2.080 sum -0.848 3.305 9.189 9.802 Atomic orbital electron populations 1.22406 0.71145 1.06273 1.05845 1.48685 1.08492 1.01447 1.55013 1.77187 1.02128 1.05787 1.25191 1.24336 0.96123 0.92220 0.96727 1.19915 0.91675 0.95292 1.22077 1.17294 0.81681 0.81909 0.80604 1.90686 1.79006 1.36301 1.40030 1.47325 1.22755 1.30308 1.30114 1.20731 0.87563 0.92012 0.99068 1.21707 1.00867 0.99159 0.97922 1.20455 0.85920 0.96473 0.93984 1.43810 1.03538 1.11341 1.74059 1.19192 1.03240 0.90324 1.25545 0.93598 1.25667 1.01523 0.96788 0.98741 1.70099 1.32091 1.10969 1.44031 0.85671 0.80105 0.79357 0.77851 1.21597 1.21673 1.20036 1.21537 0.97340 0.84473 0.91162 1.22140 1.02455 0.88682 0.90833 1.21985 0.91113 0.83971 1.02614 1.98421 1.90081 1.11192 1.96510 0.87399 0.86840 0.88967 0.75322 0.88018 0.90645 0.89424 0.95689 0.92272 0.94689 0.94444 0.96571 0.94235 0.89310 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.74 11.28 127.77 1.44 3.19 16 2 N -0.35 -10.98 3.98 -357.40 -1.42 -12.40 16 3 N -0.28 -8.74 12.49 -56.26 -0.70 -9.44 16 4 C 0.09 2.74 10.06 85.67 0.86 3.60 16 5 C -0.27 -9.95 5.24 -20.12 -0.11 -10.05 16 6 C 0.60 23.31 7.37 86.63 0.64 23.94 16 7 O -0.58 -25.47 16.53 -4.09 -0.07 -25.53 16 8 N -0.58 -20.09 2.47 -836.22 -2.06 -22.15 16 9 C 0.13 3.91 5.73 84.23 0.48 4.39 16 10 C -0.16 -5.35 5.64 29.04 0.16 -5.18 16 11 C 0.16 6.14 5.63 87.21 0.49 6.63 16 12 N -0.60 -28.78 2.53 -699.03 -1.77 -30.56 16 13 C -0.25 -13.72 9.22 84.03 0.77 -12.95 16 14 H 0.05 2.58 7.83 -2.91 -0.02 2.56 16 15 C -0.03 -1.73 5.26 84.86 0.45 -1.28 16 16 N -0.93 -52.65 10.60 21.65 0.23 -52.42 16 17 Si 0.94 45.13 29.55 68.60 2.03 47.16 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 C 0.18 8.06 5.13 86.40 0.44 8.51 16 22 C 0.08 2.77 4.97 87.38 0.43 3.20 16 23 C 0.16 5.83 7.54 84.32 0.64 6.47 16 24 Cl 0.01 0.35 28.56 -2.72 -0.08 0.28 16 25 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.09 1.92 7.77 -2.39 -0.02 1.90 16 28 H 0.23 4.87 6.99 -2.91 -0.02 4.85 16 29 H 0.10 2.37 8.06 -2.39 -0.02 2.35 16 30 H 0.08 2.42 7.08 -2.38 -0.02 2.40 16 31 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.02 1.06 7.91 -2.39 -0.02 1.04 16 33 H 0.06 1.99 7.58 -2.39 -0.02 1.97 16 34 H 0.03 1.41 8.02 -2.39 -0.02 1.39 16 35 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 36 H 0.02 0.79 7.95 -2.39 -0.02 0.77 16 37 H 0.04 2.07 6.61 -2.39 -0.02 2.06 16 38 H 0.09 2.56 4.19 -2.39 -0.01 2.55 16 39 H 0.09 2.49 7.73 -2.39 -0.02 2.47 16 Total: -1.00 -71.51 331.55 3.93 -67.58 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.07 Total: 7.03 kcal Atomic # 6 Polarization: 23.76 SS G_CDS: 6.71 Total: 30.47 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -5.73 Total: -126.97 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.07 Total: -25.53 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.28 kcal Total: -71.51 3.93 -67.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981459530.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.377 kcal (2) G-P(sol) polarization free energy of solvation -71.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds