Wall clock time and date at job start Fri Apr 10 2020 18:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.99439 * 2 1 4 4 C 1.54331 * 109.99159 * 238.96252 * 2 1 3 5 5 H 1.08999 * 110.85108 * 100.19989 * 4 2 1 6 6 N 1.46504 * 110.66756 * 337.04966 * 4 2 1 7 7 C 1.36934 * 120.00134 * 96.25887 * 6 4 2 8 8 H 1.08003 * 119.99682 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00026 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00045 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 120.00028 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46831 * 89.99914 * 11 9 7 13 13 H 1.48494 * 109.47187 * 209.99931 * 11 9 7 14 14 H 1.48498 * 109.47095 * 330.00156 * 11 9 7 15 15 C 1.55160 * 103.01963 * 218.66537 * 4 2 1 16 16 C 1.54910 * 101.57966 * 35.30686 * 15 4 2 17 17 N 1.47018 * 109.87871 * 121.09497 * 2 1 3 18 18 C 1.34780 * 125.65032 * 298.38964 * 17 2 1 19 19 O 1.21688 * 120.00025 * 0.89454 * 18 17 2 20 20 C 1.46667 * 120.00010 * 180.88592 * 18 17 2 21 21 C 1.36675 * 126.84167 * 351.97358 * 20 18 17 22 22 N 1.33299 * 107.83202 * 180.02562 * 21 20 18 23 23 C 1.31021 * 109.70289 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 125.43782 * 179.97438 * 23 22 21 25 25 N 1.34608 * 109.13065 * 0.02562 * 23 22 21 26 26 C 1.46494 * 126.49114 * 180.02562 * 25 23 22 27 27 H 1.08996 * 109.47226 * 295.64096 * 1 2 3 28 28 H 1.09004 * 109.46822 * 55.64186 * 1 2 3 29 29 H 1.08996 * 109.46802 * 175.63974 * 1 2 3 30 30 H 0.97001 * 119.99621 * 276.26130 * 6 4 2 31 31 H 0.97003 * 120.00151 * 180.02562 * 10 9 7 32 32 H 1.09000 * 111.00383 * 277.23227 * 15 4 2 33 33 H 1.09004 * 111.00124 * 153.38243 * 15 4 2 34 34 H 1.09004 * 110.36558 * 204.15082 * 16 15 4 35 35 H 1.09007 * 110.46115 * 81.87810 * 16 15 4 36 36 H 1.08001 * 126.08214 * 359.77252 * 21 20 18 37 37 H 1.09005 * 109.46928 * 274.76566 * 26 25 23 38 38 H 1.08995 * 109.47222 * 34.76500 * 26 25 23 39 39 H 1.09003 * 109.47073 * 154.76903 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 2.3598 -0.0450 -2.0191 6 7 1.0483 -1.6788 -1.7532 7 6 0.2254 -1.3008 -2.7804 8 1 0.3208 -0.3165 -3.2144 9 6 -0.7306 -2.1831 -3.2644 10 7 -1.5212 -1.8200 -4.2521 11 14 -0.8942 -3.8865 -2.5150 12 1 -1.8638 -3.8417 -1.3911 13 1 -1.3774 -4.8374 -3.5481 14 1 0.4286 -4.3342 -2.0100 15 6 3.2864 -1.5183 -0.6914 16 6 2.8099 -1.8825 0.7369 17 7 2.0300 -0.7140 1.1839 18 6 1.8074 -0.3620 2.4657 19 8 1.1275 0.6150 2.7191 20 6 2.3844 -1.1564 3.5552 21 6 3.0343 -2.3534 3.4415 22 7 3.3996 -2.7374 4.6645 23 6 3.0128 -1.8444 5.5419 24 17 3.2764 -1.9368 7.2552 25 7 2.3774 -0.8445 4.9028 26 6 1.7914 0.3490 5.5178 27 1 -0.3633 0.4447 0.9264 28 1 -0.3633 0.5800 -0.8484 29 1 -0.3633 -1.0247 -0.0781 30 1 0.9629 -2.5630 -1.3635 31 1 -2.1895 -2.4365 -4.5901 32 1 4.1670 -0.8768 -0.6578 33 1 3.4808 -2.4156 -1.2791 34 1 3.6655 -2.0411 1.3933 35 1 2.1806 -2.7722 0.7134 36 1 3.2156 -2.8940 2.5243 37 1 0.7810 0.1232 5.8587 38 1 2.4012 0.6566 6.3673 39 1 1.7560 1.1551 4.7850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986551853.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:06 Heat of formation + Delta-G solvation = 42.736103 kcal Electronic energy + Delta-G solvation = -24286.834326 eV Core-core repulsion = 20678.136208 eV Total energy + Delta-G solvation = -3608.698117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.50697 -41.12271 -38.90251 -38.16220 -36.05622 -35.25416 -33.64587 -32.42803 -31.68926 -30.06617 -28.32216 -27.04130 -25.17882 -24.84282 -22.91862 -22.83979 -21.22792 -20.26964 -19.71766 -18.44878 -17.95226 -17.61608 -17.26731 -16.49956 -16.23036 -15.80438 -15.68907 -15.32130 -15.10908 -14.99465 -14.59789 -14.27292 -14.14499 -13.78940 -13.76320 -13.47056 -13.10869 -12.96455 -12.86865 -12.73573 -12.45101 -12.34641 -11.98519 -11.82859 -11.68405 -11.62708 -11.54744 -11.08346 -11.02670 -10.93594 -9.87885 -9.63471 -9.29427 -7.96473 -5.29513 -0.03294 0.01273 1.38517 1.40236 1.42968 1.43683 1.50455 2.06487 2.10464 2.52541 3.22018 3.36548 3.58085 3.59072 3.64810 3.67727 3.98524 4.05135 4.18058 4.27941 4.35421 4.48363 4.49600 4.55088 4.69187 4.76672 4.80496 4.98569 5.12021 5.15862 5.24721 5.26133 5.41863 5.49476 5.51858 5.85186 6.26692 6.39268 6.43544 6.95801 7.13445 7.87660 8.05782 9.24876 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.023249 B = 0.003549 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.070027 B = 7887.609744 C = 8179.927166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.121 3.879 3 H 0.074 0.926 4 C 0.167 3.833 5 H 0.084 0.916 6 N -0.733 5.733 7 C -0.213 4.213 8 H 0.062 0.938 9 C -0.061 4.061 10 N -0.985 5.985 11 Si 0.941 3.059 12 H -0.291 1.291 13 H -0.303 1.303 14 H -0.239 1.239 15 C -0.131 4.131 16 C 0.078 3.922 17 N -0.589 5.589 18 C 0.602 3.398 19 O -0.575 6.575 20 C -0.077 4.077 21 C 0.040 3.960 22 N -0.490 5.490 23 C 0.256 3.744 24 Cl 0.063 6.937 25 N -0.415 5.415 26 C 0.059 3.941 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.366 0.634 31 H 0.254 0.746 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.223 0.777 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.216 0.373 21.668 25.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.015 3.985 3 H 0.092 0.908 4 C 0.057 3.943 5 H 0.102 0.898 6 N -0.374 5.374 7 C -0.344 4.344 8 H 0.080 0.920 9 C -0.252 4.252 10 N -0.636 5.636 11 Si 0.769 3.231 12 H -0.218 1.218 13 H -0.230 1.230 14 H -0.163 1.163 15 C -0.170 4.170 16 C -0.044 4.044 17 N -0.320 5.320 18 C 0.391 3.609 19 O -0.457 6.457 20 C -0.194 4.194 21 C -0.114 4.114 22 N -0.212 5.212 23 C -0.031 4.031 24 Cl 0.091 6.909 25 N -0.099 5.099 26 C -0.082 4.082 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.200 0.800 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.239 0.761 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.132 0.482 22.130 26.262 hybrid contribution -1.465 -0.092 0.074 1.470 sum 12.667 0.390 22.204 25.566 Atomic orbital electron populations 1.21668 0.95766 1.01506 0.99558 1.22492 0.94283 0.96386 0.85323 0.90796 1.21449 0.88537 0.92100 0.92241 0.89812 1.42651 1.40164 1.14648 1.39968 1.18946 1.09084 0.98941 1.07385 0.91979 1.25366 0.98725 1.01963 0.99194 1.69867 1.25116 1.37435 1.31163 0.85625 0.79089 0.81150 0.77229 1.21790 1.22980 1.16334 1.23162 0.97410 1.02380 0.93998 1.23094 0.96091 0.87983 0.97199 1.48218 1.51375 1.28808 1.03621 1.16422 0.80005 0.83259 0.81194 1.90764 1.41578 1.29690 1.83653 1.20673 1.13321 1.01366 0.84055 1.23829 0.97531 0.93247 0.96749 1.70133 1.24201 1.26908 0.99955 1.23519 1.01006 0.88357 0.90185 1.98436 1.94923 1.97477 1.00074 1.45193 1.40507 1.18697 1.05493 1.22572 1.00449 0.84619 1.00544 0.94291 0.93367 0.93513 0.79995 0.93671 0.87514 0.88126 0.86628 0.90459 0.76136 0.88717 0.86593 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 8.20 71.98 0.59 -4.32 16 2 C 0.12 3.82 3.44 45.35 0.16 3.98 16 3 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.17 5.18 3.53 46.18 0.16 5.34 16 5 H 0.08 2.67 8.06 -2.39 -0.02 2.65 16 6 N -0.73 -29.38 3.45 -317.31 -1.09 -30.48 16 7 C -0.21 -10.96 9.28 84.03 0.78 -10.18 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 9 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 10 N -0.98 -61.25 13.97 21.65 0.30 -60.94 16 11 Si 0.94 43.30 27.73 68.60 1.90 45.20 16 12 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 13 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 14 H -0.24 -9.43 6.52 99.48 0.65 -8.78 16 15 C -0.13 -2.72 6.70 31.99 0.21 -2.50 16 16 C 0.08 1.57 5.21 86.86 0.45 2.02 16 17 N -0.59 -16.08 3.06 -792.70 -2.43 -18.51 16 18 C 0.60 17.76 7.60 86.44 0.66 18.42 16 19 O -0.58 -20.11 13.84 -4.31 -0.06 -20.17 16 20 C -0.08 -1.95 6.86 39.96 0.27 -1.67 16 21 C 0.04 0.90 10.20 84.10 0.86 1.76 16 22 N -0.49 -11.90 11.21 -190.25 -2.13 -14.03 16 23 C 0.26 5.59 8.48 180.25 1.53 7.12 16 24 Cl 0.06 1.01 28.84 -2.72 -0.08 0.93 16 25 N -0.42 -9.29 3.18 -528.38 -1.68 -10.97 16 26 C 0.06 0.99 10.52 127.77 1.34 2.34 16 27 H 0.04 1.52 6.72 -2.39 -0.02 1.51 16 28 H 0.05 2.03 7.82 -2.38 -0.02 2.02 16 29 H 0.05 1.97 7.06 -2.39 -0.02 1.95 16 30 H 0.37 14.21 5.71 -92.71 -0.53 13.68 16 31 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 1.98 8.14 -2.39 -0.02 1.97 16 34 H 0.12 1.67 5.31 -2.39 -0.01 1.66 16 35 H 0.08 1.57 8.03 -2.38 -0.02 1.55 16 36 H 0.22 3.67 4.73 -2.91 -0.01 3.66 16 37 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.12 1.25 7.94 -2.39 -0.02 1.23 16 39 H 0.10 2.01 6.42 -2.39 -0.02 1.99 16 Total: -1.00 -70.48 328.29 2.73 -67.75 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.51 Total: 21.88 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 7.49 Total: 19.34 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -7.03 Total: -134.93 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.06 Total: -20.17 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.90 Total: 45.20 kcal Atomic # 17 Polarization: 1.01 SS G_CDS: -0.08 Total: 0.93 kcal Total: -70.48 2.73 -67.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986551853.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.485 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds