Wall clock time and date at job start Fri Apr 10 2020 18:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.99848 * 2 1 4 4 C 1.54340 * 109.98589 * 238.96537 * 2 1 3 5 5 C 1.55165 * 103.01490 * 218.66361 * 4 2 1 6 6 H 1.08995 * 111.03522 * 277.21795 * 5 4 2 7 7 N 1.46508 * 111.00000 * 153.38263 * 5 4 2 8 8 C 1.36936 * 119.99946 * 161.34913 * 7 5 4 9 9 H 1.07999 * 119.99594 * 0.02562 * 8 7 5 10 10 C 1.38802 * 119.99884 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00561 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99977 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47112 * 90.00020 * 12 10 8 14 14 H 1.48503 * 109.47179 * 210.00062 * 12 10 8 15 15 H 1.48498 * 109.46936 * 330.00237 * 12 10 8 16 16 C 1.54909 * 101.58085 * 35.31155 * 5 4 2 17 17 N 1.47023 * 109.88525 * 121.09913 * 2 1 3 18 18 C 1.34779 * 125.64714 * 298.39297 * 17 2 1 19 19 O 1.21645 * 119.99635 * 4.34049 * 18 17 2 20 20 C 1.47023 * 120.00041 * 184.34146 * 18 17 2 21 21 C 1.38546 * 126.90415 * 269.28018 * 20 18 17 22 22 Cl 1.73595 * 127.34050 * 359.97438 * 21 20 18 23 23 C 1.39809 * 105.32312 * 180.24551 * 21 20 18 24 24 N 1.30839 * 107.87666 * 359.74680 * 23 21 20 25 25 N 1.28428 * 110.98278 * 359.97438 * 24 23 21 26 26 C 1.46505 * 125.19053 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.46713 * 300.35370 * 1 2 3 28 28 H 1.09002 * 109.47218 * 60.35362 * 1 2 3 29 29 H 1.08999 * 109.47443 * 180.35772 * 1 2 3 30 30 H 1.08999 * 110.84804 * 100.19932 * 4 2 1 31 31 H 1.08996 * 110.51625 * 336.97273 * 4 2 1 32 32 H 0.97006 * 119.99915 * 341.34947 * 7 5 4 33 33 H 0.96998 * 120.00710 * 180.02562 * 11 10 8 34 34 H 1.09002 * 110.36154 * 204.15206 * 16 5 4 35 35 H 1.08997 * 110.46096 * 81.87517 * 16 5 4 36 36 H 1.08002 * 126.06340 * 179.71292 * 23 21 20 37 37 H 1.09007 * 109.46670 * 85.09881 * 26 25 24 38 38 H 1.08995 * 109.47309 * 205.09385 * 26 25 24 39 39 H 1.08996 * 109.46942 * 325.10134 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0575 -0.7478 -1.2428 5 6 3.2863 -1.5184 -0.6916 6 1 4.1673 -0.8774 -0.6581 7 7 3.5474 -2.7243 -1.4815 8 6 4.7733 -3.3314 -1.4194 9 1 5.5475 -2.9214 -0.7877 10 6 5.0205 -4.4742 -2.1674 11 7 4.0769 -4.9741 -2.9368 12 14 6.6926 -5.3027 -2.0820 13 1 6.6884 -6.3152 -0.9958 14 1 6.9820 -5.9680 -3.3778 15 1 7.7364 -4.2836 -1.8048 16 6 2.8098 -1.8826 0.7367 17 7 2.0301 -0.7141 1.1839 18 6 1.8075 -0.3621 2.4657 19 8 1.0770 0.5766 2.7205 20 6 2.4476 -1.1127 3.5559 21 6 1.9349 -2.2154 4.2197 22 17 0.4100 -2.9969 3.9414 23 6 2.9046 -2.5609 5.1658 24 7 3.8999 -1.7201 5.0462 25 7 3.6704 -0.8651 4.1158 26 6 4.5774 0.2150 3.7193 27 1 -0.3633 0.5193 0.8868 28 1 -0.3634 0.5083 -0.8931 29 1 -0.3634 -1.0276 0.0064 30 1 2.3596 -0.0449 -2.0192 31 1 1.3052 -1.4406 -1.6197 32 1 2.8519 -3.0927 -2.0486 33 1 4.2496 -5.7729 -3.4592 34 1 3.6655 -2.0413 1.3931 35 1 2.1806 -2.7722 0.7132 36 1 2.8427 -3.3767 5.8708 37 1 5.3032 -0.1656 3.0005 38 1 4.0039 1.0221 3.2637 39 1 5.0999 0.5918 4.5984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988850116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:10 Heat of formation + Delta-G solvation = 59.634414 kcal Electronic energy + Delta-G solvation = -24328.521550 eV Core-core repulsion = 20720.556198 eV Total energy + Delta-G solvation = -3607.965352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.68766 -39.91680 -37.49888 -36.60430 -34.30307 -33.51703 -32.20604 -31.47390 -30.34484 -28.49574 -27.31096 -25.58752 -24.30599 -23.43958 -21.92500 -20.98474 -20.39264 -19.17476 -17.73980 -17.34321 -16.75513 -16.11796 -15.99752 -15.39240 -14.90926 -14.37669 -14.03431 -14.01559 -13.66974 -13.42222 -13.27886 -13.16394 -12.94855 -12.78252 -12.40179 -12.21939 -11.92328 -11.82013 -11.71706 -11.23090 -11.10086 -10.86139 -10.73765 -10.58286 -10.41231 -10.13953 -10.04984 -9.83935 -9.38039 -9.10724 -8.81428 -8.56556 -7.17477 -5.91813 -3.23405 1.40258 1.69968 2.25856 2.38147 2.71054 3.06033 3.35168 3.40657 3.42178 4.24420 4.35328 4.48500 4.85280 4.88490 4.90968 4.99587 5.11675 5.15540 5.21407 5.27989 5.38191 5.45960 5.60889 5.68995 5.73947 5.99958 6.01966 6.05544 6.08821 6.25737 6.33423 6.37619 6.43511 6.51960 6.73222 7.49624 7.56124 7.78194 8.00561 8.25303 9.37603 9.89824 10.24709 11.29943 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.004840 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.808288 B = 5783.491489 C = 6589.676256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.174 3.826 6 H 0.064 0.936 7 N -0.710 5.710 8 C -0.252 4.252 9 H 0.071 0.929 10 C -0.005 4.005 11 N -0.927 5.927 12 Si 0.907 3.093 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.281 1.281 16 C 0.074 3.926 17 N -0.592 5.592 18 C 0.603 3.397 19 O -0.527 6.527 20 C 0.003 3.997 21 C -0.117 4.117 22 Cl -0.020 7.020 23 C 0.025 3.975 24 N -0.273 5.273 25 N -0.265 5.265 26 C 0.087 3.913 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.388 0.612 33 H 0.258 0.742 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.195 0.805 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.820 9.576 11.448 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.094 0.906 4 C -0.175 4.175 5 C 0.062 3.938 6 H 0.082 0.918 7 N -0.350 5.350 8 C -0.382 4.382 9 H 0.089 0.911 10 C -0.202 4.202 11 N -0.574 5.574 12 Si 0.738 3.262 13 H -0.215 1.215 14 H -0.216 1.216 15 H -0.207 1.207 16 C -0.052 4.052 17 N -0.325 5.325 18 C 0.387 3.613 19 O -0.403 6.403 20 C -0.128 4.128 21 C -0.155 4.155 22 Cl 0.008 6.992 23 C -0.153 4.153 24 N -0.103 5.103 25 N -0.053 5.053 26 C -0.053 4.053 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.223 0.777 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.212 0.788 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.989 10.358 11.986 16.121 hybrid contribution -0.197 -1.163 -0.385 1.240 sum -3.186 9.196 11.601 15.143 Atomic orbital electron populations 1.22156 0.94673 1.02606 1.02665 1.21619 0.94679 0.95925 0.84088 0.90607 1.23029 0.99071 0.99714 0.95636 1.21261 0.94557 0.89576 0.88429 0.91782 1.42305 1.14324 1.27544 1.50815 1.19192 0.90181 1.06457 1.22407 0.91081 1.24759 0.97937 0.98335 0.99188 1.69649 1.32501 1.24011 1.31269 0.86204 0.83449 0.79509 0.77076 1.21511 1.21605 1.20657 1.23611 0.94503 0.87392 0.99657 1.48593 1.51198 1.28786 1.03907 1.16451 0.81347 0.82847 0.80685 1.90821 1.37380 1.28905 1.83178 1.21160 0.89863 1.00350 1.01422 1.21203 0.93003 0.98223 1.03040 1.98353 1.26304 1.78777 1.95767 1.23486 0.89590 1.01120 1.01149 1.73221 1.25439 1.02512 1.09161 1.45427 1.12289 1.23287 1.24252 1.22283 0.93222 0.86794 1.03006 0.91343 0.91637 0.92262 0.89962 0.90082 0.77717 0.93230 0.91778 0.90670 0.78846 0.88825 0.88649 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.10 37.16 0.34 -1.78 16 2 C 0.14 1.91 3.48 -66.94 -0.23 1.68 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 4 C -0.14 -1.96 6.11 -24.88 -0.15 -2.11 16 5 C 0.17 3.08 3.69 -65.77 -0.24 2.84 16 6 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 7 N -0.71 -16.19 5.28 -51.35 -0.27 -16.46 16 8 C -0.25 -6.48 9.98 -15.06 -0.15 -6.63 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 11 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 12 Si 0.91 21.39 29.55 -169.99 -5.02 16.37 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 C 0.07 1.25 6.41 -2.53 -0.02 1.23 16 17 N -0.59 -8.98 3.06 -164.41 -0.50 -9.48 16 18 C 0.60 9.60 6.76 -12.70 -0.09 9.52 16 19 O -0.53 -9.44 16.00 5.24 0.08 -9.35 16 20 C 0.00 0.04 5.57 -82.00 -0.46 -0.42 16 21 C -0.12 -1.72 6.89 -38.88 -0.27 -1.98 16 22 Cl -0.02 -0.29 29.24 -51.86 -1.52 -1.80 16 23 C 0.02 0.32 12.04 -17.39 -0.21 0.11 16 24 N -0.27 -3.78 11.89 30.61 0.36 -3.42 16 25 N -0.26 -3.58 3.75 -63.85 -0.24 -3.82 16 26 C 0.09 0.83 11.22 59.85 0.67 1.50 16 27 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.21 7.70 -51.93 -0.40 0.81 16 32 H 0.39 9.47 7.71 -40.82 -0.31 9.15 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.06 1.11 7.62 -51.93 -0.40 0.72 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.19 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.86 7.65 -51.93 -0.40 0.46 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -30.89 346.65 -7.27 -38.15 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.21 Total: 6.74 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.90 Total: 3.71 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.07 Total: -59.04 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.52 Total: -1.80 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.89 -7.27 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988850116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.786 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds