Wall clock time and date at job start Fri Apr 10 2020 18:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.39932 * 125.75065 * 2 1 4 4 C 1.30412 * 108.95790 * 179.73177 * 3 2 1 5 5 C 1.41337 * 108.05080 * 0.41439 * 4 3 2 6 6 C 1.47296 * 126.43766 * 179.85382 * 5 4 3 7 7 O 1.21619 * 120.00483 * 139.85658 * 6 5 4 8 8 N 1.34783 * 119.99917 * 319.86008 * 6 5 4 9 9 C 1.46927 * 120.63213 * 174.07500 * 8 6 5 10 10 C 1.53188 * 108.77536 * 126.66686 * 9 8 6 11 11 C 1.53031 * 109.31382 * 54.63128 * 10 9 8 12 12 N 1.46503 * 109.46152 * 178.61134 * 11 10 9 13 13 C 1.36937 * 120.00181 * 275.07376 * 12 11 10 14 14 H 1.07998 * 120.00272 * 359.97438 * 13 12 11 15 15 C 1.38819 * 119.99761 * 179.97438 * 13 12 11 16 16 N 1.31614 * 119.99864 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99856 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46771 * 90.00195 * 17 15 13 19 19 H 1.48492 * 109.46990 * 210.00298 * 17 15 13 20 20 H 1.48499 * 109.47103 * 330.00376 * 17 15 13 21 21 C 1.53032 * 109.54379 * 298.63367 * 11 10 9 22 22 C 1.46921 * 120.62656 * 354.35269 * 8 6 5 23 23 C 1.34347 * 125.74982 * 179.97438 * 2 1 3 24 24 Cl 1.73599 * 126.32161 * 0.02562 * 23 2 1 25 25 H 1.09003 * 109.47699 * 269.99559 * 1 2 3 26 26 H 1.09003 * 109.47395 * 30.00405 * 1 2 3 27 27 H 1.09007 * 109.47285 * 150.00001 * 1 2 3 28 28 H 1.08000 * 125.97297 * 180.26364 * 4 3 2 29 29 H 1.09000 * 109.58523 * 246.45276 * 9 8 6 30 30 H 1.09001 * 109.58311 * 6.87704 * 9 8 6 31 31 H 1.09008 * 109.49520 * 294.68086 * 10 9 8 32 32 H 1.08998 * 109.49658 * 174.58794 * 10 9 8 33 33 H 1.09004 * 109.46413 * 58.65821 * 11 10 9 34 34 H 0.97005 * 119.99662 * 95.06794 * 12 11 10 35 35 H 0.97007 * 119.99851 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.49818 * 301.41799 * 21 11 10 37 37 H 1.08998 * 109.52954 * 181.33097 * 21 11 10 38 38 H 1.08999 * 109.59001 * 353.12278 * 22 8 6 39 39 H 1.09003 * 109.58972 * 113.40589 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5310 0.7589 0.0058 5 6 3.5621 -0.6541 0.0000 6 6 4.7660 -1.5027 0.0005 7 8 4.7970 -2.5140 0.6755 8 7 5.8334 -1.1585 -0.7470 9 6 7.0863 -1.9209 -0.6588 10 6 7.4982 -2.3572 -2.0683 11 6 7.5729 -1.1282 -2.9770 12 7 7.9988 -1.5376 -4.3177 13 6 9.3318 -1.6683 -4.6026 14 1 10.0692 -1.4693 -3.8391 15 6 9.7352 -2.0568 -5.8728 16 7 8.8364 -2.2988 -6.8033 17 14 11.5536 -2.2344 -6.2617 18 1 11.9888 -3.6238 -5.9691 19 1 11.7841 -1.9355 -7.6978 20 1 12.3333 -1.2853 -5.4271 21 6 6.1948 -0.4679 -3.0593 22 6 5.7681 -0.0101 -1.6609 23 6 2.2499 -1.0903 0.0005 24 17 1.7155 -2.7420 0.0006 25 1 -0.3634 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 4.3908 1.4124 0.0113 29 1 7.8664 -1.2933 -0.2280 30 1 6.9353 -2.8008 -0.0333 31 1 6.7611 -3.0569 -2.4625 32 1 8.4744 -2.8405 -2.0288 33 1 8.2921 -0.4180 -2.5690 34 1 7.3364 -1.7161 -5.0035 35 1 9.1183 -2.5706 -7.6909 36 1 5.4700 -1.1853 -3.4441 37 1 6.2428 0.3937 -3.7252 38 1 4.7475 0.3709 -1.6968 39 1 6.4389 0.7745 -1.3105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996725070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:28 Heat of formation + Delta-G solvation = 57.436519 kcal Electronic energy + Delta-G solvation = -23669.400593 eV Core-core repulsion = 20061.339934 eV Total energy + Delta-G solvation = -3608.060660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.78791 -39.60056 -37.30234 -37.13500 -34.51815 -33.84738 -31.98742 -31.05147 -30.28128 -29.20548 -27.47695 -25.04090 -23.42638 -22.83507 -21.95586 -21.49175 -20.24512 -19.13291 -17.78053 -16.98477 -16.70374 -16.19827 -15.79660 -15.09738 -14.81161 -14.76583 -14.03026 -13.88339 -13.74844 -13.52903 -13.38175 -13.24482 -13.09422 -12.77287 -12.43022 -12.28455 -12.00973 -11.88871 -11.45858 -11.15322 -10.91083 -10.86106 -10.78208 -10.38719 -10.23807 -9.93659 -9.83972 -9.71270 -9.59352 -8.97202 -8.87645 -8.40999 -6.96188 -5.76639 -3.05481 1.01361 1.05814 1.88789 2.17074 2.95697 3.29495 3.43739 3.48958 3.50424 4.00126 4.53325 4.58380 4.66414 4.69506 4.90408 4.97114 5.05986 5.09408 5.29777 5.42431 5.49729 5.62074 5.67001 5.80631 5.93807 5.94419 6.03644 6.12569 6.25743 6.34063 6.48585 6.59414 6.66235 6.96270 7.03590 7.09059 7.56260 7.69952 8.30822 8.41788 9.53015 10.10771 10.45306 11.46014 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.025117 B = 0.003020 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.517488 B = 9267.960879 C = 9395.473972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.356 5.356 3 N -0.274 5.274 4 C 0.090 3.910 5 C -0.259 4.259 6 C 0.592 3.408 7 O -0.538 6.538 8 N -0.599 5.599 9 C 0.115 3.885 10 C -0.150 4.150 11 C 0.179 3.821 12 N -0.725 5.725 13 C -0.238 4.238 14 H 0.071 0.929 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.139 4.139 22 C 0.107 3.893 23 C 0.173 3.827 24 Cl 0.023 6.977 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.201 0.799 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.315 6.248 15.179 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.139 5.139 3 N -0.095 5.095 4 C -0.096 4.096 5 C -0.275 4.275 6 C 0.379 3.621 7 O -0.415 6.415 8 N -0.331 5.331 9 C -0.007 4.007 10 C -0.191 4.191 11 C 0.069 3.931 12 N -0.365 5.365 13 C -0.369 4.369 14 H 0.089 0.911 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.178 4.178 22 C -0.017 4.017 23 C 0.016 3.984 24 Cl 0.051 6.949 25 H 0.103 0.897 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.218 0.782 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.104 6.565 15.496 24.718 hybrid contribution 1.170 -1.036 -0.648 1.692 sum -16.934 5.529 14.848 23.190 Atomic orbital electron populations 1.22092 0.72992 1.05474 1.04363 1.48497 1.07438 1.02244 1.55677 1.77343 1.01904 1.05327 1.24917 1.24097 0.95460 0.93145 0.96933 1.19921 0.91899 0.94173 1.21539 1.17079 0.81560 0.83950 0.79506 1.90780 1.81842 1.25769 1.43126 1.47946 1.12764 1.31497 1.40916 1.21719 0.83739 0.96272 0.99010 1.22657 1.01839 1.00966 0.93605 1.20173 0.92548 0.93038 0.87367 1.42435 1.05143 1.81588 1.07317 1.19238 0.83699 1.38465 0.95542 0.91144 1.24745 0.97471 1.02474 0.96289 1.69663 1.31859 1.53150 1.03462 0.86208 0.85048 0.77786 0.77254 1.21752 1.21835 1.20750 1.22195 0.98983 1.01495 0.95115 1.21957 1.01984 0.87836 0.89903 1.21988 0.90619 0.83977 1.01842 1.98454 1.89978 1.10093 1.96390 0.89742 0.88099 0.88938 0.78202 0.91677 0.89531 0.92249 0.90711 0.93363 0.78314 0.93539 0.91837 0.90512 0.89932 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 11.28 59.84 0.67 1.18 16 2 N -0.36 -3.58 3.98 -64.32 -0.26 -3.83 16 3 N -0.27 -3.00 12.49 30.87 0.39 -2.62 16 4 C 0.09 0.95 9.63 -16.98 -0.16 0.79 16 5 C -0.26 -3.33 5.20 -105.02 -0.55 -3.87 16 6 C 0.59 8.93 7.47 -12.58 -0.09 8.84 16 7 O -0.54 -9.66 16.05 5.26 0.08 -9.58 16 8 N -0.60 -8.46 2.97 -174.08 -0.52 -8.97 16 9 C 0.11 1.71 6.44 -3.71 -0.02 1.69 16 10 C -0.15 -2.65 5.66 -26.62 -0.15 -2.80 16 11 C 0.18 3.38 2.73 -67.90 -0.19 3.19 16 12 N -0.72 -17.71 5.12 -53.39 -0.27 -17.98 16 13 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 15 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 16 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 17 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C -0.14 -2.15 5.55 -26.61 -0.15 -2.30 16 22 C 0.11 1.30 5.46 -3.71 -0.02 1.28 16 23 C 0.17 2.06 7.52 -16.44 -0.12 1.94 16 24 Cl 0.02 0.25 28.15 -51.86 -1.46 -1.20 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.39 7.78 -51.93 -0.40 -0.01 16 28 H 0.20 1.52 7.36 -52.49 -0.39 1.13 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 31 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 35 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 0.90 4.80 -51.93 -0.25 0.65 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 339.15 15.07 5.11 5.11 Total: -1.00 -33.57 339.15 -7.32 -40.89 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.07 Total: 5.45 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.03 Total: 2.83 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.06 Total: -60.68 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.46 Total: -1.20 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.57 -7.32 -40.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996725070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.329 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds