Wall clock time and date at job start Fri Apr 10 2020 18:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28464 * 124.88522 * 2 1 4 4 C 1.31808 * 110.11296 * 179.97438 * 3 2 1 5 5 C 1.47701 * 126.50992 * 180.02562 * 4 3 2 6 6 O 1.21572 * 119.99710 * 187.07596 * 5 4 3 7 7 N 1.34778 * 120.00667 * 7.07929 * 5 4 3 8 8 C 1.46919 * 120.63275 * 186.72822 * 7 5 4 9 9 C 1.52763 * 109.00700 * 233.57818 * 8 7 5 10 10 C 1.53035 * 109.38334 * 305.58929 * 9 8 7 11 11 N 1.46502 * 109.44615 * 181.25403 * 10 9 8 12 12 C 1.36942 * 120.00177 * 84.94145 * 11 10 9 13 13 H 1.07999 * 119.99547 * 359.97438 * 12 11 10 14 14 C 1.38812 * 119.99843 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99955 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99814 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47338 * 89.99594 * 16 14 12 18 18 H 1.48496 * 109.47089 * 209.99735 * 16 14 12 19 19 H 1.48497 * 109.47008 * 329.99788 * 16 14 12 20 20 C 1.53041 * 109.53853 * 61.23870 * 10 9 8 21 21 C 1.46923 * 120.62621 * 7.00146 * 7 5 4 22 22 C 1.41509 * 106.97299 * 359.97438 * 4 3 2 23 23 C 1.35071 * 124.88589 * 180.26336 * 2 1 3 24 24 Cl 1.73604 * 126.40113 * 0.08912 * 23 2 1 25 25 H 1.08999 * 109.47247 * 90.02627 * 1 2 3 26 26 H 1.09004 * 109.47051 * 210.02559 * 1 2 3 27 27 H 1.09001 * 109.47095 * 330.02131 * 1 2 3 28 28 H 1.08999 * 109.59192 * 353.41559 * 8 7 5 29 29 H 1.08999 * 109.58636 * 113.83994 * 8 7 5 30 30 H 1.09004 * 109.56462 * 185.55350 * 9 8 7 31 31 H 1.08993 * 109.35823 * 65.50432 * 9 8 7 32 32 H 1.08996 * 109.46037 * 301.21474 * 10 9 8 33 33 H 0.97000 * 119.99837 * 264.93239 * 11 10 9 34 34 H 0.97006 * 119.99924 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.49834 * 178.67834 * 20 10 9 36 36 H 1.09004 * 109.52329 * 58.60446 * 20 10 9 37 37 H 1.08993 * 109.58980 * 246.16155 * 21 7 5 38 38 H 1.09005 * 109.58772 * 6.44745 * 21 7 5 39 39 H 1.07995 * 127.25565 * 180.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1996 1.0538 0.0000 4 6 3.4742 0.7177 0.0006 5 6 4.6266 1.6416 0.0013 6 8 5.7544 1.2065 -0.1280 7 7 4.4279 2.9668 0.1453 8 6 5.5443 3.9111 0.0015 9 6 5.6123 4.7943 1.2461 10 6 4.2522 5.4582 1.4727 11 7 4.3244 6.3289 2.6487 12 6 4.7845 7.6125 2.5231 13 1 5.0946 7.9829 1.5571 14 6 4.8533 8.4373 3.6375 15 7 4.4759 7.9857 4.8147 16 14 5.4817 10.1881 3.4663 17 1 4.3437 11.0960 3.1729 18 1 6.1343 10.6058 4.7331 19 1 6.4664 10.2543 2.3568 20 6 3.1886 4.3815 1.6998 21 6 3.0920 3.4941 0.4549 22 6 3.5285 -0.6963 0.0015 23 6 2.2374 -1.1080 -0.0051 24 17 1.6805 -2.7522 -0.0148 25 1 -0.3634 -0.0005 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 6.4783 3.3593 -0.1048 29 1 5.3841 4.5351 -0.8777 30 1 6.3734 5.5622 1.1076 31 1 5.8665 4.1812 2.1107 32 1 3.9874 6.0514 0.5974 33 1 4.0461 5.9961 3.5163 34 1 4.5236 8.5621 5.5935 35 1 2.2246 4.8556 1.8844 36 1 3.4650 3.7722 2.5604 37 1 2.7277 4.0835 -0.3865 38 1 2.4078 2.6672 0.6452 39 1 4.4126 -1.3166 0.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996792618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:29 Heat of formation + Delta-G solvation = 45.490230 kcal Electronic energy + Delta-G solvation = -23549.214861 eV Core-core repulsion = 19940.636171 eV Total energy + Delta-G solvation = -3608.578690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.91350 -41.00849 -38.72961 -37.99078 -36.18616 -34.72621 -33.78985 -32.33859 -31.54425 -31.02266 -28.57025 -26.65325 -25.05275 -24.18592 -23.37368 -22.56818 -21.60436 -20.39327 -19.21651 -18.53378 -17.96472 -17.63445 -16.90747 -16.70531 -16.16472 -15.61613 -15.49554 -15.36742 -15.15782 -14.91126 -14.71754 -14.40536 -13.93678 -13.76227 -13.58301 -13.51826 -13.13834 -13.09050 -12.84544 -12.76355 -12.53868 -12.18722 -12.17266 -11.96121 -11.87401 -11.67036 -11.44911 -10.96511 -10.86421 -10.34426 -10.12410 -9.69530 -9.00103 -7.92619 -5.21193 0.28717 0.36247 0.74846 1.43167 1.48472 1.49877 1.58154 1.99925 2.20156 2.57552 3.04695 3.40554 3.60341 3.83872 3.92578 4.07911 4.17880 4.19495 4.30053 4.32405 4.34111 4.41260 4.47697 4.61852 4.63850 4.82531 4.86097 4.88775 4.97686 5.06897 5.13707 5.29255 5.41241 5.51117 5.55774 5.66111 6.27649 6.29826 6.58957 7.01978 7.35321 8.10965 8.34353 9.31068 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.028737 B = 0.002768 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.114572 B =10111.717969 C =10664.045177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.266 5.266 3 N -0.238 5.238 4 C -0.025 4.025 5 C 0.598 3.402 6 O -0.569 6.569 7 N -0.593 5.593 8 C 0.121 3.879 9 C -0.138 4.138 10 C 0.173 3.827 11 N -0.737 5.737 12 C -0.235 4.235 13 H 0.078 0.922 14 C -0.078 4.078 15 N -0.972 5.972 16 Si 0.971 3.029 17 H -0.286 1.286 18 H -0.299 1.299 19 H -0.269 1.269 20 C -0.127 4.127 21 C 0.102 3.898 22 C -0.166 4.166 23 C 0.056 3.944 24 Cl 0.027 6.973 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.371 0.629 34 H 0.250 0.750 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.680 -21.602 -13.414 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.057 5.057 3 N -0.077 5.077 4 C -0.182 4.182 5 C 0.386 3.614 6 O -0.448 6.448 7 N -0.325 5.325 8 C -0.001 4.001 9 C -0.179 4.179 10 C 0.065 3.935 11 N -0.376 5.376 12 C -0.367 4.367 13 H 0.096 0.904 14 C -0.270 4.270 15 N -0.623 5.623 16 Si 0.800 3.200 17 H -0.213 1.213 18 H -0.226 1.226 19 H -0.194 1.194 20 C -0.166 4.166 21 C -0.021 4.021 22 C -0.195 4.195 23 C -0.095 4.095 24 Cl 0.055 6.945 25 H 0.130 0.870 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.148 0.852 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -11.933 -20.888 -13.580 27.625 hybrid contribution 0.924 0.211 0.826 1.257 sum -11.009 -20.678 -12.754 26.672 Atomic orbital electron populations 1.22807 0.69801 1.07734 1.06997 1.46129 1.09642 1.01040 1.48839 1.73525 1.02656 1.11855 1.19633 1.21575 0.90836 0.93933 1.11834 1.17175 0.86534 0.81492 0.76247 1.90750 1.24119 1.77113 1.52794 1.48055 1.11351 1.05049 1.67996 1.21556 0.89840 0.90616 0.98129 1.22373 1.00537 0.98210 0.96789 1.20429 0.92754 0.90284 0.90024 1.42661 1.77587 1.10760 1.06626 1.19636 1.33410 0.89423 0.94239 0.90420 1.25550 1.03638 1.02462 0.95375 1.69824 1.55995 1.37218 0.99240 0.85169 0.77925 0.80322 0.76540 1.21322 1.22566 1.19431 1.22077 0.99813 0.96771 0.97971 1.22457 0.83010 0.99735 0.96860 1.21571 0.96627 0.93273 1.08030 1.21932 0.90691 0.84862 1.12030 1.98419 1.89294 1.09649 1.97149 0.86979 0.86487 0.86471 0.89887 0.89422 0.91831 0.94270 0.92965 0.79787 0.94162 0.90126 0.93352 0.89761 0.85190 0.80700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 11.14 127.77 1.42 1.81 16 2 N -0.27 -4.27 3.70 -359.17 -1.33 -5.59 16 3 N -0.24 -5.19 8.46 -48.18 -0.41 -5.59 16 4 C -0.02 -0.65 6.82 42.46 0.29 -0.36 16 5 C 0.60 18.95 7.69 86.74 0.67 19.61 16 6 O -0.57 -21.18 16.36 -3.94 -0.06 -21.25 16 7 N -0.59 -17.74 2.98 -823.34 -2.45 -20.19 16 8 C 0.12 3.72 6.41 86.22 0.55 4.27 16 9 C -0.14 -5.09 5.64 30.53 0.17 -4.91 16 10 C 0.17 6.75 2.73 45.02 0.12 6.87 16 11 N -0.74 -37.13 5.12 -322.82 -1.65 -38.78 16 12 C -0.24 -12.96 9.93 84.03 0.83 -12.12 16 13 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 14 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 15 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 16 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 17 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 18 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C -0.13 -4.11 5.55 30.67 0.17 -3.94 16 21 C 0.10 2.70 6.11 86.36 0.53 3.22 16 22 C -0.17 -3.71 10.80 22.45 0.24 -3.47 16 23 C 0.06 0.96 7.44 83.56 0.62 1.58 16 24 Cl 0.03 0.32 28.68 -2.72 -0.08 0.24 16 25 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.12 0.27 7.72 -2.38 -0.02 0.26 16 27 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.08 2.65 7.00 -2.39 -0.02 2.63 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 33 H 0.37 20.28 7.80 -92.71 -0.72 19.56 16 34 H 0.25 14.96 8.31 -92.70 -0.77 14.18 16 35 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.05 1.68 8.14 -2.38 -0.02 1.67 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.13 3.17 4.18 -24.70 -0.10 3.06 16 39 H 0.18 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -71.85 339.10 2.69 -69.16 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.27 Total: 24.82 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.09 Total: 8.54 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -5.56 Total: -129.77 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.06 Total: -21.25 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -0.08 Total: 0.24 kcal Total: -71.85 2.69 -69.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996792618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.652 kcal (2) G-P(sol) polarization free energy of solvation -71.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds