Wall clock time and date at job start Fri Apr 10 2020 18:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34232 * 125.73534 * 2 1 4 4 C 1.38068 * 107.43719 * 179.97438 * 3 2 1 5 5 C 1.47385 * 126.42541 * 179.97438 * 4 3 2 6 6 O 1.21606 * 120.00430 * 230.34521 * 5 4 3 7 7 N 1.34785 * 119.99771 * 50.34151 * 5 4 3 8 8 C 1.46921 * 120.62861 * 355.37038 * 7 5 4 9 9 C 1.53190 * 108.77583 * 126.66510 * 8 7 5 10 10 C 1.53040 * 109.31439 * 54.63333 * 9 8 7 11 11 N 1.46494 * 109.46270 * 178.61569 * 10 9 8 12 12 C 1.36938 * 119.99770 * 275.06696 * 11 10 9 13 13 H 1.07991 * 120.00479 * 0.02562 * 12 11 10 14 14 C 1.38813 * 119.99693 * 179.97438 * 12 11 10 15 15 N 1.31622 * 120.00013 * 179.97438 * 14 12 11 16 16 Si 1.86808 * 120.00359 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.46995 * 89.99791 * 16 14 12 18 18 H 1.48500 * 109.47081 * 210.00120 * 16 14 12 19 19 H 1.48502 * 109.46662 * 329.99939 * 16 14 12 20 20 C 1.53041 * 109.53652 * 298.63727 * 10 9 8 21 21 C 1.46923 * 120.63068 * 175.65009 * 7 5 4 22 22 C 1.41393 * 107.15457 * 0.22807 * 4 3 2 23 23 Cl 1.73598 * 126.00586 * 179.73605 * 22 4 3 24 24 N 1.30533 * 107.98881 * 359.61711 * 22 4 3 25 25 H 1.09000 * 109.47364 * 90.00485 * 1 2 3 26 26 H 1.08999 * 109.46926 * 209.99907 * 1 2 3 27 27 H 1.09000 * 109.47375 * 330.00105 * 1 2 3 28 28 H 1.08002 * 126.28351 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.58865 * 246.45456 * 8 7 5 30 30 H 1.08998 * 109.58786 * 6.87606 * 8 7 5 31 31 H 1.08997 * 109.49747 * 294.68182 * 9 8 7 32 32 H 1.09003 * 109.50007 * 174.58602 * 9 8 7 33 33 H 1.09004 * 109.45710 * 58.65189 * 10 9 8 34 34 H 0.97003 * 120.00232 * 95.07213 * 11 10 9 35 35 H 0.97005 * 119.99882 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.49798 * 301.41249 * 20 10 9 37 37 H 1.09003 * 109.52097 * 181.32911 * 20 10 9 38 38 H 1.09004 * 109.58406 * 353.12098 * 21 7 5 39 39 H 1.08997 * 109.58519 * 113.40097 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0896 0.0000 4 6 3.5598 0.6561 0.0006 5 6 4.7630 1.5073 0.0003 6 8 5.6478 1.3093 -0.8102 7 7 4.8827 2.5053 0.8983 8 6 3.7806 2.8219 1.8168 9 6 4.3165 2.8121 3.2519 10 6 5.5114 3.7630 3.3525 11 7 6.0059 3.7812 4.7313 12 6 5.4311 4.6142 5.6538 13 1 4.6130 5.2573 5.3651 14 6 5.8993 4.6311 6.9605 15 7 5.3472 5.4320 7.8471 16 14 7.3140 3.5182 7.4604 17 1 8.6007 4.2298 7.2530 18 1 7.1749 3.1542 8.8933 19 1 7.2907 2.2858 6.6320 20 6 6.6252 3.2859 2.4177 21 6 6.1155 3.3011 0.9731 22 6 3.5316 -0.7575 -0.0044 23 17 4.9153 -1.8059 -0.0124 24 7 2.2823 -1.1358 0.0005 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9156 2.1169 -0.0004 29 1 3.3817 3.8089 1.5824 30 1 2.9941 2.0741 1.7153 31 1 4.6317 1.8026 3.5156 32 1 3.5327 3.1392 3.9352 33 1 5.2013 4.7675 3.0647 34 1 6.7405 3.2034 4.9909 35 1 5.6742 5.4436 8.7603 36 1 6.9187 2.2719 2.6892 37 1 7.4851 3.9498 2.5070 38 1 6.8696 2.8694 0.3149 39 1 5.9076 4.3265 0.6674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997172538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:40 Heat of formation + Delta-G solvation = 62.113878 kcal Electronic energy + Delta-G solvation = -23795.371559 eV Core-core repulsion = 20187.513724 eV Total energy + Delta-G solvation = -3607.857834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82012 -39.68378 -37.38063 -36.93260 -34.62207 -33.59932 -32.25596 -31.41542 -30.30947 -29.66714 -27.44970 -25.17791 -23.21747 -23.05117 -21.76516 -21.51045 -20.38939 -19.33493 -17.72610 -17.31094 -16.80268 -16.12177 -15.81412 -15.25713 -15.01777 -14.84725 -14.12202 -13.99841 -13.87124 -13.59192 -13.52501 -13.35480 -13.05252 -12.76929 -12.43708 -12.18424 -11.97328 -11.87466 -11.75885 -11.08446 -11.01971 -10.96275 -10.90085 -10.57295 -10.26286 -9.90483 -9.90194 -9.67288 -9.61636 -9.01687 -8.91993 -8.52179 -7.30935 -5.80869 -3.16465 1.15423 1.18780 1.80289 2.37629 2.80983 3.21258 3.36283 3.39970 3.44273 4.08201 4.28771 4.56614 4.62618 4.66437 4.92798 4.97080 5.00738 5.04683 5.09832 5.25789 5.33594 5.46523 5.52307 5.60015 5.65713 5.84002 5.92817 6.09054 6.15821 6.27648 6.32571 6.37175 6.54980 6.78683 6.92657 6.97502 7.46821 7.94753 8.22864 8.38427 9.16889 9.89934 10.09756 11.37349 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.003598 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.741210 B = 7780.539549 C = 8115.404740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.350 5.350 3 C 0.105 3.895 4 C -0.264 4.264 5 C 0.593 3.407 6 O -0.534 6.534 7 N -0.600 5.600 8 C 0.102 3.898 9 C -0.151 4.151 10 C 0.184 3.816 11 N -0.749 5.749 12 C -0.244 4.244 13 H 0.090 0.910 14 C 0.006 3.994 15 N -0.934 5.934 16 Si 0.883 3.117 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.277 1.277 20 C -0.143 4.143 21 C 0.120 3.880 22 C 0.166 3.834 23 Cl 0.024 6.976 24 N -0.282 5.282 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.194 0.806 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 -9.477 -18.347 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.130 5.130 3 C -0.045 4.045 4 C -0.280 4.280 5 C 0.380 3.620 6 O -0.411 6.411 7 N -0.333 5.333 8 C -0.021 4.021 9 C -0.192 4.192 10 C 0.074 3.926 11 N -0.390 5.390 12 C -0.374 4.374 13 H 0.108 0.892 14 C -0.190 4.190 15 N -0.582 5.582 16 Si 0.713 3.287 17 H -0.210 1.210 18 H -0.218 1.218 19 H -0.203 1.203 20 C -0.182 4.182 21 C -0.003 4.003 22 C -0.026 4.026 23 Cl 0.052 6.948 24 N -0.107 5.107 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.211 0.789 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.095 -10.477 -18.630 23.638 hybrid contribution 1.426 -0.217 0.724 1.614 sum -8.668 -10.694 -17.906 22.586 Atomic orbital electron populations 1.22110 0.72498 1.05576 1.04231 1.48161 1.07172 1.02989 1.54695 1.23110 0.89299 0.94135 0.97943 1.20076 0.93886 0.92308 1.21711 1.17144 0.85018 0.79234 0.80575 1.90775 1.41711 1.70238 1.38401 1.48022 1.17043 1.33238 1.35032 1.22010 0.88961 1.00731 0.90387 1.22624 1.01136 1.01675 0.93727 1.20140 0.91076 0.96566 0.84790 1.42809 1.40949 1.49023 1.06259 1.19057 1.13946 1.14999 0.89409 0.89189 1.24663 0.99197 0.99139 0.96012 1.69700 1.43974 1.40958 1.03525 0.86573 0.83373 0.81015 0.77706 1.21030 1.21775 1.20322 1.22256 0.99693 1.02234 0.94056 1.21598 0.86081 0.95023 0.97590 1.22559 0.89475 0.89819 1.00782 1.98425 1.34731 1.64998 1.96624 1.77212 1.00002 1.07604 1.25907 0.89879 0.88472 0.88381 0.78903 0.91182 0.90382 0.92274 0.90298 0.92485 0.80622 0.93049 0.91863 0.90373 0.89152 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.38 11.44 59.85 0.68 1.06 16 2 N -0.35 -3.13 3.98 -67.60 -0.27 -3.40 16 3 C 0.11 0.95 9.13 -16.56 -0.15 0.80 16 4 C -0.26 -3.38 5.15 -105.04 -0.54 -3.92 16 5 C 0.59 8.66 7.45 -12.53 -0.09 8.57 16 6 O -0.53 -9.34 16.54 5.27 0.09 -9.26 16 7 N -0.60 -7.99 2.97 -174.06 -0.52 -8.51 16 8 C 0.10 1.22 5.89 -3.71 -0.02 1.19 16 9 C -0.15 -2.37 5.66 -26.61 -0.15 -2.52 16 10 C 0.18 3.26 2.73 -67.89 -0.19 3.08 16 11 N -0.75 -16.99 4.92 -53.39 -0.26 -17.25 16 12 C -0.24 -6.62 10.41 -15.06 -0.16 -6.77 16 13 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 14 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 15 N -0.93 -28.73 13.97 55.49 0.78 -27.96 16 16 Si 0.88 21.88 27.74 -169.99 -4.71 17.16 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 19 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 20 C -0.14 -2.17 5.55 -26.61 -0.15 -2.32 16 21 C 0.12 1.59 6.42 -3.71 -0.02 1.56 16 22 C 0.17 2.26 7.89 -16.90 -0.13 2.13 16 23 Cl 0.02 0.33 29.19 -51.86 -1.51 -1.18 16 24 N -0.28 -3.53 12.50 33.18 0.41 -3.11 16 25 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.19 1.00 7.61 -52.49 -0.40 0.60 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.80 4.58 -51.93 -0.24 0.57 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.36 8.24 5.66 -40.82 -0.23 8.00 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.24 7.03 -51.93 -0.37 0.88 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 338.35 15.07 5.10 5.10 Total: -1.00 -35.15 338.35 -6.97 -42.12 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.05 Total: 3.36 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.02 Total: 2.93 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.14 Total: -60.23 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.51 Total: -1.18 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.15 -6.97 -42.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997172538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.231 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds