Wall clock time and date at job start Fri Apr 10 2020 18:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34232 * 125.73534 * 2 1 4 4 C 1.38068 * 107.43719 * 179.97438 * 3 2 1 5 5 C 1.47385 * 126.42541 * 179.97438 * 4 3 2 6 6 O 1.21606 * 120.00430 * 230.34521 * 5 4 3 7 7 N 1.34785 * 119.99771 * 50.34151 * 5 4 3 8 8 C 1.46921 * 120.62861 * 355.37038 * 7 5 4 9 9 C 1.53190 * 108.77583 * 126.66510 * 8 7 5 10 10 C 1.53040 * 109.31439 * 54.63333 * 9 8 7 11 11 N 1.46494 * 109.46270 * 178.61569 * 10 9 8 12 12 C 1.36938 * 119.99770 * 275.06696 * 11 10 9 13 13 H 1.07991 * 120.00479 * 0.02562 * 12 11 10 14 14 C 1.38813 * 119.99693 * 179.97438 * 12 11 10 15 15 N 1.31622 * 120.00013 * 179.97438 * 14 12 11 16 16 Si 1.86808 * 120.00359 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.46995 * 89.99791 * 16 14 12 18 18 H 1.48500 * 109.47081 * 210.00120 * 16 14 12 19 19 H 1.48502 * 109.46662 * 329.99939 * 16 14 12 20 20 C 1.53041 * 109.53652 * 298.63727 * 10 9 8 21 21 C 1.46923 * 120.63068 * 175.65009 * 7 5 4 22 22 C 1.41393 * 107.15457 * 0.22807 * 4 3 2 23 23 Cl 1.73598 * 126.00586 * 179.73605 * 22 4 3 24 24 N 1.30533 * 107.98881 * 359.61711 * 22 4 3 25 25 H 1.09000 * 109.47364 * 90.00485 * 1 2 3 26 26 H 1.08999 * 109.46926 * 209.99907 * 1 2 3 27 27 H 1.09000 * 109.47375 * 330.00105 * 1 2 3 28 28 H 1.08002 * 126.28351 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.58865 * 246.45456 * 8 7 5 30 30 H 1.08998 * 109.58786 * 6.87606 * 8 7 5 31 31 H 1.08997 * 109.49747 * 294.68182 * 9 8 7 32 32 H 1.09003 * 109.50007 * 174.58602 * 9 8 7 33 33 H 1.09004 * 109.45710 * 58.65189 * 10 9 8 34 34 H 0.97003 * 120.00232 * 95.07213 * 11 10 9 35 35 H 0.97005 * 119.99882 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.49798 * 301.41249 * 20 10 9 37 37 H 1.09003 * 109.52097 * 181.32911 * 20 10 9 38 38 H 1.09004 * 109.58406 * 353.12098 * 21 7 5 39 39 H 1.08997 * 109.58519 * 113.40097 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0896 0.0000 4 6 3.5598 0.6561 0.0006 5 6 4.7630 1.5073 0.0003 6 8 5.6478 1.3093 -0.8102 7 7 4.8827 2.5053 0.8983 8 6 3.7806 2.8219 1.8168 9 6 4.3165 2.8121 3.2519 10 6 5.5114 3.7630 3.3525 11 7 6.0059 3.7812 4.7313 12 6 5.4311 4.6142 5.6538 13 1 4.6130 5.2573 5.3651 14 6 5.8993 4.6311 6.9605 15 7 5.3472 5.4320 7.8471 16 14 7.3140 3.5182 7.4604 17 1 8.6007 4.2298 7.2530 18 1 7.1749 3.1542 8.8933 19 1 7.2907 2.2858 6.6320 20 6 6.6252 3.2859 2.4177 21 6 6.1155 3.3011 0.9731 22 6 3.5316 -0.7575 -0.0044 23 17 4.9153 -1.8059 -0.0124 24 7 2.2823 -1.1358 0.0005 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9156 2.1169 -0.0004 29 1 3.3817 3.8089 1.5824 30 1 2.9941 2.0741 1.7153 31 1 4.6317 1.8026 3.5156 32 1 3.5327 3.1392 3.9352 33 1 5.2013 4.7675 3.0647 34 1 6.7405 3.2034 4.9909 35 1 5.6742 5.4436 8.7603 36 1 6.9187 2.2719 2.6892 37 1 7.4851 3.9498 2.5070 38 1 6.8696 2.8694 0.3149 39 1 5.9076 4.3265 0.6674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997172538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:39 Heat of formation + Delta-G solvation = 37.091731 kcal Electronic energy + Delta-G solvation = -23796.456600 eV Core-core repulsion = 20187.513724 eV Total energy + Delta-G solvation = -3608.942876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.63631 -40.77435 -38.67074 -37.90049 -36.20394 -34.28887 -33.92452 -32.65193 -31.54700 -31.01849 -28.07002 -26.58922 -24.51760 -24.33018 -22.98964 -22.31412 -21.64015 -20.49950 -19.47535 -18.38981 -17.76852 -16.90250 -16.74856 -16.67663 -16.08894 -16.01104 -15.81756 -15.05800 -14.99832 -14.79844 -14.67728 -14.30904 -14.20320 -13.86979 -13.56665 -13.48334 -13.23893 -12.93621 -12.71549 -12.67136 -12.57708 -12.16884 -12.11659 -11.95981 -11.87392 -11.75782 -11.30343 -11.03822 -10.90184 -10.48384 -9.85093 -9.59807 -9.26827 -7.99794 -5.31713 0.32967 0.45524 0.84240 1.39685 1.40376 1.47545 1.63956 1.82830 2.21300 2.49956 3.31590 3.35869 3.57289 3.66978 3.86687 3.98993 4.09095 4.19894 4.22507 4.35361 4.43782 4.45656 4.46451 4.63141 4.75151 4.75313 4.78515 4.85429 4.90063 5.05192 5.09318 5.31617 5.50910 5.64338 5.73590 5.81565 6.16526 6.24972 6.42203 7.10959 7.16532 7.88556 8.05829 9.21572 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.003598 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.741210 B = 7780.539549 C = 8115.404740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.339 5.339 3 C 0.131 3.869 4 C -0.299 4.299 5 C 0.595 3.405 6 O -0.571 6.571 7 N -0.599 5.599 8 C 0.112 3.888 9 C -0.143 4.143 10 C 0.176 3.824 11 N -0.755 5.755 12 C -0.221 4.221 13 H 0.066 0.934 14 C -0.062 4.062 15 N -0.983 5.983 16 Si 0.946 3.054 17 H -0.280 1.280 18 H -0.299 1.299 19 H -0.259 1.259 20 C -0.133 4.133 21 C 0.124 3.876 22 C 0.146 3.854 23 Cl 0.008 6.992 24 N -0.307 5.307 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.239 0.761 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.361 0.639 35 H 0.256 0.744 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.020 -9.457 -19.857 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.119 5.119 3 C -0.021 4.021 4 C -0.315 4.315 5 C 0.384 3.616 6 O -0.451 6.451 7 N -0.331 5.331 8 C -0.011 4.011 9 C -0.183 4.183 10 C 0.068 3.932 11 N -0.397 5.397 12 C -0.352 4.352 13 H 0.084 0.916 14 C -0.253 4.253 15 N -0.634 5.634 16 Si 0.775 3.225 17 H -0.206 1.206 18 H -0.226 1.226 19 H -0.184 1.184 20 C -0.172 4.172 21 C 0.001 3.999 22 C -0.045 4.045 23 Cl 0.036 6.964 24 N -0.133 5.133 25 H 0.120 0.880 26 H 0.116 0.884 27 H 0.151 0.849 28 H 0.255 0.745 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.194 0.806 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.535 -10.496 -20.193 25.514 hybrid contribution 1.699 -0.186 1.112 2.039 sum -9.836 -10.682 -19.081 23.977 Atomic orbital electron populations 1.22620 0.69462 1.07387 1.06036 1.48623 1.08633 1.02070 1.52535 1.23701 0.87763 0.95734 0.94923 1.20057 0.94819 0.91729 1.24864 1.17378 0.85150 0.79031 0.80062 1.90750 1.43254 1.71104 1.39993 1.48063 1.17265 1.32950 1.34818 1.22052 0.88696 1.03094 0.87246 1.22430 0.99700 0.99829 0.96373 1.20423 0.92704 0.97326 0.82709 1.42902 1.40944 1.48265 1.07582 1.19058 1.12267 1.13873 0.89974 0.91606 1.25377 1.02309 1.01266 0.96349 1.69860 1.46239 1.43518 1.03810 0.85541 0.80246 0.79845 0.76907 1.20621 1.22617 1.18385 1.22132 0.98922 1.01504 0.94653 1.21559 0.86244 0.96218 0.95832 1.22681 0.89583 0.90200 1.02043 1.98405 1.35728 1.65538 1.96759 1.77143 0.99946 1.09664 1.26568 0.88046 0.88379 0.84918 0.74478 0.88271 0.88240 0.93831 0.91635 0.92450 0.80620 0.93522 0.92889 0.89970 0.89634 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.31 11.44 127.77 1.46 1.77 16 2 N -0.34 -4.93 3.98 -367.78 -1.46 -6.39 16 3 C 0.13 1.83 9.13 84.29 0.77 2.60 16 4 C -0.30 -7.03 5.15 -20.13 -0.10 -7.13 16 5 C 0.60 16.37 7.45 86.65 0.65 17.02 16 6 O -0.57 -19.65 16.54 -4.05 -0.07 -19.71 16 7 N -0.60 -14.41 2.97 -822.84 -2.45 -16.86 16 8 C 0.11 2.26 5.89 86.36 0.51 2.77 16 9 C -0.14 -4.22 5.66 30.67 0.17 -4.04 16 10 C 0.18 5.97 2.73 45.02 0.12 6.09 16 11 N -0.75 -33.51 4.92 -322.83 -1.59 -35.10 16 12 C -0.22 -11.96 10.41 84.03 0.87 -11.08 16 13 H 0.07 3.83 8.06 -2.92 -0.02 3.81 16 14 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 15 N -0.98 -61.67 13.97 21.65 0.30 -61.37 16 16 Si 0.95 45.31 27.74 68.60 1.90 47.21 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 19 H -0.26 -11.44 6.52 99.48 0.65 -10.79 16 20 C -0.13 -3.81 5.55 30.67 0.17 -3.64 16 21 C 0.12 3.02 6.42 86.36 0.55 3.57 16 22 C 0.15 3.87 7.89 85.66 0.68 4.54 16 23 Cl 0.01 0.22 29.19 -2.72 -0.08 0.14 16 24 N -0.31 -7.22 12.50 -48.95 -0.61 -7.83 16 25 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 26 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.13 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.24 0.98 7.61 -2.91 -0.02 0.96 16 29 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 1.63 4.58 -2.39 -0.01 1.62 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 34 H 0.36 15.96 5.66 -92.71 -0.52 15.44 16 35 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.09 2.23 7.03 -2.38 -0.02 2.22 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -79.00 338.35 2.77 -76.23 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.50 Total: 14.29 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 6.32 Total: 9.40 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -5.81 Total: -127.55 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.07 Total: -19.71 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -0.08 Total: 0.14 kcal Total: -79.00 2.77 -76.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997172538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.322 kcal (2) G-P(sol) polarization free energy of solvation -78.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds