Wall clock time and date at job start Fri Apr 10 2020 18:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28429 * 125.18937 * 2 1 4 4 C 1.30842 * 110.98114 * 180.02562 * 3 2 1 5 5 C 1.39806 * 107.87578 * 359.77722 * 4 3 2 6 6 Cl 1.73604 * 127.33680 * 180.26443 * 5 4 3 7 7 C 1.36750 * 125.18435 * 180.02562 * 2 1 3 8 8 C 1.47037 * 126.90427 * 359.92336 * 7 2 1 9 9 O 1.21635 * 120.00350 * 269.24254 * 8 7 2 10 10 N 1.34780 * 119.99513 * 89.24441 * 8 7 2 11 11 C 1.46929 * 120.63244 * 354.70991 * 10 8 7 12 12 C 1.53191 * 108.77508 * 126.41532 * 11 10 8 13 13 C 1.53032 * 109.30989 * 54.63771 * 12 11 10 14 14 C 1.53040 * 109.53906 * 298.62969 * 13 12 11 15 15 H 1.08999 * 109.50138 * 301.38532 * 14 13 12 16 16 N 1.46504 * 109.50031 * 181.31602 * 14 13 12 17 17 C 1.36934 * 119.99865 * 154.99922 * 16 14 13 18 18 H 1.08004 * 120.00266 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99921 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00019 * 359.72616 * 19 17 16 21 21 Si 1.86798 * 120.00104 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46907 * 60.00295 * 21 19 17 23 23 H 1.48506 * 109.47109 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47227 * 300.00082 * 21 19 17 25 25 C 1.46925 * 120.62930 * 174.73548 * 10 8 7 26 26 H 1.08998 * 109.46784 * 274.89991 * 1 2 3 27 27 H 1.08997 * 109.46642 * 34.89527 * 1 2 3 28 28 H 1.08999 * 109.47313 * 154.89728 * 1 2 3 29 29 H 1.08000 * 126.06142 * 179.97438 * 4 3 2 30 30 H 1.09010 * 109.58349 * 6.62734 * 11 10 8 31 31 H 1.08998 * 109.58642 * 246.20548 * 11 10 8 32 32 H 1.08993 * 109.49565 * 294.68486 * 12 11 10 33 33 H 1.09000 * 109.49296 * 174.58888 * 12 11 10 34 34 H 1.09007 * 109.46131 * 178.61351 * 13 12 11 35 35 H 1.08994 * 109.45497 * 58.65092 * 13 12 11 36 36 H 0.97003 * 119.99888 * 335.00728 * 16 14 13 37 37 H 0.96999 * 120.00135 * 180.02562 * 20 19 17 38 38 H 1.08998 * 109.58400 * 113.79789 * 25 10 8 39 39 H 1.09001 * 109.58564 * 353.37263 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4736 0.7284 -0.0005 5 6 3.5630 -0.6668 0.0042 6 17 5.0078 -1.6292 0.0121 7 6 2.2530 -1.1177 -0.0005 8 6 1.8008 -2.5168 0.0004 9 8 1.6282 -3.0995 1.0541 10 7 1.5777 -3.1536 -1.1663 11 6 1.6695 -2.4316 -2.4427 12 6 2.6365 -3.1812 -3.3646 13 6 2.1835 -4.6369 -3.4971 14 6 2.2092 -5.3081 -2.1219 15 1 3.2174 -5.2571 -1.7109 16 7 1.8056 -6.7102 -2.2545 17 6 2.2192 -7.6320 -1.3303 18 1 2.8427 -7.3255 -0.5034 19 6 1.8372 -8.9606 -1.4561 20 7 1.0730 -9.3333 -2.4608 21 14 2.4009 -10.2181 -0.1950 22 1 1.9045 -9.8279 1.1491 23 1 1.8609 -11.5544 -0.5528 24 1 3.8848 -10.2715 -0.1783 25 6 1.2374 -4.5827 -1.1859 26 1 -0.3633 0.0878 1.0239 27 1 -0.3632 0.8429 -0.5879 28 1 -0.3634 -0.9306 -0.4360 29 1 4.3041 1.4187 -0.0011 30 1 2.0416 -1.4224 -2.2657 31 1 0.6847 -2.3840 -2.9072 32 1 3.6405 -3.1496 -2.9416 33 1 2.6404 -2.7104 -4.3477 34 1 2.8559 -5.1665 -4.1722 35 1 1.1700 -4.6668 -3.8969 36 1 1.2454 -6.9855 -2.9970 37 1 0.8057 -10.2616 -2.5486 38 1 0.2173 -4.7104 -1.5480 39 1 1.3242 -4.9929 -0.1797 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999176614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:44 Heat of formation + Delta-G solvation = 34.860959 kcal Electronic energy + Delta-G solvation = -24240.330230 eV Core-core repulsion = 20631.290620 eV Total energy + Delta-G solvation = -3609.039609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.76240 -41.11007 -38.78512 -37.67288 -36.27979 -34.44506 -34.01143 -32.82210 -32.06439 -29.96139 -28.18776 -26.86025 -25.91108 -23.86989 -23.34168 -22.84289 -21.48314 -20.32570 -19.16843 -18.97621 -17.96542 -17.10042 -16.97389 -16.69873 -16.42140 -15.78995 -15.52647 -15.43228 -15.26666 -15.10608 -14.66678 -14.19402 -14.05409 -13.95414 -13.75373 -13.65461 -13.12611 -12.93982 -12.90074 -12.78622 -12.54198 -12.26584 -12.07308 -11.95260 -11.75372 -11.63324 -11.42235 -11.37746 -11.08203 -10.37174 -9.91984 -9.87449 -9.04369 -7.98611 -5.27685 0.29324 0.67329 1.09893 1.37069 1.45091 1.47119 1.52908 1.55710 1.97853 2.53461 3.09218 3.34769 3.45804 3.68194 3.89738 3.95776 4.00302 4.11468 4.19497 4.25012 4.28339 4.34110 4.34777 4.49891 4.53290 4.66668 4.81288 4.83338 4.97106 5.07724 5.10549 5.31360 5.38250 5.43151 5.49116 5.51881 6.14370 6.23872 6.76289 6.78473 7.31371 8.02460 8.28282 9.23630 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.018925 B = 0.003855 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.163567 B = 7262.456737 C = 7489.795944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.262 5.262 3 N -0.274 5.274 4 C 0.031 3.969 5 C -0.129 4.129 6 Cl -0.025 7.025 7 C -0.016 4.016 8 C 0.586 3.414 9 O -0.565 6.565 10 N -0.582 5.582 11 C 0.105 3.895 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.167 3.833 15 H 0.031 0.969 16 N -0.727 5.727 17 C -0.247 4.247 18 H 0.065 0.935 19 C -0.063 4.063 20 N -0.962 5.962 21 Si 0.964 3.036 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.108 3.892 26 H 0.098 0.902 27 H 0.132 0.868 28 H 0.096 0.904 29 H 0.226 0.774 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.379 0.621 37 H 0.253 0.747 38 H 0.073 0.927 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 24.761 -1.644 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.050 5.050 3 N -0.104 5.104 4 C -0.146 4.146 5 C -0.167 4.167 6 Cl 0.003 6.997 7 C -0.147 4.147 8 C 0.371 3.629 9 O -0.443 6.443 10 N -0.314 5.314 11 C -0.016 4.016 12 C -0.158 4.158 13 C -0.155 4.155 14 C 0.057 3.943 15 H 0.050 0.950 16 N -0.367 5.367 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.256 4.256 20 N -0.612 5.612 21 Si 0.793 3.207 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.017 4.017 26 H 0.116 0.884 27 H 0.151 0.849 28 H 0.115 0.885 29 H 0.243 0.757 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.212 0.788 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.125 25.173 -0.969 25.192 hybrid contribution 0.745 -2.195 0.718 2.426 sum 0.870 22.979 -0.252 22.997 Atomic orbital electron populations 1.22623 0.70252 1.06947 1.06378 1.45823 1.08700 1.00569 1.49929 1.73258 1.03583 1.12992 1.20617 1.23993 0.94500 0.92018 1.04126 1.21448 0.86901 0.93419 1.14915 1.98372 1.33350 1.70660 1.97274 1.20990 0.91749 0.89069 1.12890 1.17248 0.77290 0.84477 0.83921 1.90851 1.52773 1.68121 1.32568 1.48249 1.66319 1.10498 1.06329 1.22062 1.01807 0.95463 0.82263 1.21838 0.98740 0.94212 1.01056 1.21729 1.02416 0.95815 0.95517 1.20639 0.94875 0.83637 0.95122 0.95050 1.42474 1.61038 1.02856 1.30331 1.19464 1.24868 0.89410 1.04135 0.91723 1.25422 1.00973 0.98941 1.00263 1.69770 1.41435 1.16857 1.33109 0.85360 0.77984 0.78501 0.78825 1.20974 1.21562 1.20506 1.22415 0.99891 0.77960 1.01403 0.88392 0.84933 0.88532 0.75748 0.89181 0.88357 0.92128 0.87065 0.91825 0.90852 0.78818 0.93797 0.90910 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 11.22 127.77 1.43 2.39 16 2 N -0.26 -5.28 3.75 -355.91 -1.34 -6.62 16 3 N -0.27 -5.39 11.89 -57.06 -0.68 -6.07 16 4 C 0.03 0.57 12.04 85.22 1.03 1.60 16 5 C -0.13 -3.07 6.89 22.72 0.16 -2.92 16 6 Cl -0.03 -0.63 29.24 -2.72 -0.08 -0.71 16 7 C -0.02 -0.41 4.65 40.76 0.19 -0.22 16 8 C 0.59 18.76 6.79 86.55 0.59 19.35 16 9 O -0.57 -23.44 16.54 -4.14 -0.07 -23.51 16 10 N -0.58 -16.87 2.97 -823.21 -2.45 -19.32 16 11 C 0.11 2.11 6.35 86.36 0.55 2.66 16 12 C -0.12 -2.50 6.08 30.67 0.19 -2.31 16 13 C -0.12 -3.34 5.35 30.62 0.16 -3.17 16 14 C 0.17 6.49 2.92 45.07 0.13 6.62 16 15 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 16 N -0.73 -35.95 5.12 -322.56 -1.65 -37.61 16 17 C -0.25 -13.88 9.93 84.03 0.83 -13.05 16 18 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 19 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 20 N -0.96 -57.87 13.06 21.65 0.28 -57.59 16 21 Si 0.96 46.87 29.55 68.60 2.03 48.90 16 22 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 C 0.11 3.97 6.00 86.36 0.52 4.48 16 26 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.10 1.20 7.66 -2.39 -0.02 1.19 16 29 H 0.23 2.49 8.06 -2.91 -0.02 2.46 16 30 H 0.09 1.61 6.32 -2.38 -0.02 1.59 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.38 19.60 7.80 -92.71 -0.72 18.87 16 37 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.05 2.41 7.04 -2.39 -0.02 2.39 16 Total: -1.00 -73.16 343.41 2.65 -70.52 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.36 Total: 19.74 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.24 Total: 12.28 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -5.83 Total: -127.20 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.07 Total: -23.51 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -73.16 2.65 -70.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999176614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.378 kcal (2) G-P(sol) polarization free energy of solvation -73.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds