Wall clock time and date at job start Fri Apr 10 2020 18:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.91841 * 2 1 4 4 C 1.54912 * 111.00437 * 236.09828 * 2 1 3 5 5 N 1.47424 * 104.83330 * 204.91568 * 4 2 1 6 6 C 1.36935 * 125.65251 * 204.09103 * 5 4 2 7 7 H 1.08003 * 119.99577 * 354.83841 * 6 5 4 8 8 C 1.38810 * 120.00532 * 174.82881 * 6 5 4 9 9 N 1.31618 * 119.99717 * 7.06432 * 8 6 5 10 10 Si 1.86795 * 120.00506 * 187.05526 * 8 6 5 11 11 H 1.48498 * 109.46922 * 94.98996 * 10 8 6 12 12 H 1.48499 * 109.47356 * 214.99359 * 10 8 6 13 13 H 1.48502 * 109.47230 * 334.99230 * 10 8 6 14 14 C 1.47022 * 108.70163 * 24.12941 * 5 4 2 15 15 C 1.54321 * 107.27174 * 358.94184 * 14 5 4 16 16 H 1.09000 * 110.72365 * 96.34712 * 15 14 5 17 17 N 1.46504 * 110.71757 * 219.44261 * 15 14 5 18 18 C 1.34779 * 119.99963 * 273.53926 * 17 15 14 19 19 O 1.21618 * 120.00103 * 0.02562 * 18 17 15 20 20 C 1.47300 * 119.99806 * 179.97438 * 18 17 15 21 21 C 1.41343 * 126.43800 * 0.03458 * 20 18 17 22 22 N 1.30406 * 108.04821 * 179.97438 * 21 20 18 23 23 N 1.39927 * 108.96343 * 359.97438 * 22 21 20 24 24 C 1.46492 * 125.74989 * 180.02562 * 23 22 21 25 25 C 1.34351 * 108.49856 * 0.02562 * 23 22 21 26 26 Cl 1.73594 * 126.31762 * 180.26486 * 25 23 22 27 27 H 1.08996 * 109.47187 * 296.09547 * 1 2 3 28 28 H 1.09001 * 109.46799 * 56.09556 * 1 2 3 29 29 H 1.09005 * 109.46974 * 176.09408 * 1 2 3 30 30 H 1.09005 * 110.36926 * 86.08022 * 4 2 1 31 31 H 1.09000 * 110.46263 * 323.80452 * 4 2 1 32 32 H 0.96998 * 120.00465 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.88395 * 239.52126 * 14 5 4 34 34 H 1.09008 * 110.00836 * 118.43069 * 14 5 4 35 35 H 0.97003 * 120.00050 * 93.54698 * 17 15 14 36 36 H 1.08008 * 125.97176 * 0.02562 * 21 20 18 37 37 H 1.09007 * 109.47078 * 269.95093 * 24 23 22 38 38 H 1.08993 * 109.47546 * 29.95610 * 24 23 22 39 39 H 1.09007 * 109.47056 * 149.95838 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5667 -1.6072 7 1 4.3096 -1.5930 -2.6758 8 6 5.7136 -1.8609 -1.0791 9 7 5.8694 -1.9653 0.2237 10 14 7.1739 -2.1087 -2.2171 11 1 7.9217 -0.8324 -2.3479 12 1 8.0689 -3.1514 -1.6542 13 1 6.6921 -2.5392 -3.5542 14 6 3.4674 -1.2742 0.6960 15 6 2.0861 -0.8080 1.2022 16 1 1.4478 -1.6633 1.4239 17 7 2.2287 0.0495 2.3815 18 6 2.3021 -0.5006 3.6097 19 8 2.2505 -1.7088 3.7390 20 6 2.4460 0.3615 4.7954 21 6 2.5199 1.7730 4.8031 22 7 2.6431 2.1643 6.0409 23 7 2.6535 1.0404 6.8743 24 6 2.7751 1.0584 8.3340 25 6 2.5331 -0.0581 6.1101 26 17 2.4874 -1.7004 6.6705 27 1 -0.3633 0.4520 0.9229 28 1 -0.3633 0.5733 -0.8529 29 1 -0.3633 -1.0253 -0.0700 30 1 2.1560 -0.1720 -2.0837 31 1 1.4525 -1.6704 -1.4044 32 1 6.7425 -2.1712 0.5928 33 1 4.2426 -0.5998 1.0599 34 1 3.6662 -2.2885 1.0423 35 1 2.2701 1.0131 2.2784 36 1 2.4803 2.4151 3.9355 37 1 3.8281 1.0087 8.6116 38 1 2.3397 1.9784 8.7237 39 1 2.2481 0.2011 8.7531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079965818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:06 Heat of formation + Delta-G solvation = 67.440684 kcal Electronic energy + Delta-G solvation = -23772.830894 eV Core-core repulsion = 20165.204047 eV Total energy + Delta-G solvation = -3607.626846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.54352 -39.12550 -37.29923 -36.98029 -33.94000 -33.58246 -32.47477 -30.35134 -30.31140 -28.14622 -26.92936 -25.56150 -23.83399 -22.60234 -21.34288 -20.46688 -19.88185 -19.49024 -17.96708 -16.81738 -16.14312 -16.09637 -15.76949 -14.95027 -14.79268 -14.24227 -14.12437 -13.66503 -13.60149 -13.13772 -13.05871 -12.97572 -12.71482 -12.59236 -12.13947 -11.91313 -11.87779 -11.63650 -11.28061 -10.96370 -10.92059 -10.74907 -10.51836 -10.32132 -9.92571 -9.86473 -9.67721 -9.63929 -9.43773 -8.84813 -8.53830 -8.32413 -6.76519 -5.64164 -2.98339 1.17830 1.21624 2.02428 2.32509 3.44324 3.49041 3.51952 3.57831 3.73884 4.16505 4.55601 4.67769 4.76397 4.91217 5.01748 5.07707 5.13804 5.35986 5.47600 5.53287 5.60957 5.82998 6.02188 6.05764 6.10153 6.21639 6.25927 6.28325 6.42161 6.56275 6.68754 6.87240 7.01825 7.17236 7.63222 7.69906 7.93120 8.03176 8.32515 8.72599 9.27601 9.88611 10.54223 11.46539 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.015614 B = 0.003822 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.874653 B = 7323.405842 C = 8153.589405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.231 4.231 7 H 0.078 0.922 8 C -0.006 4.006 9 N -0.915 5.915 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.172 3.828 15 C 0.125 3.875 16 H 0.087 0.913 17 N -0.707 5.707 18 C 0.588 3.412 19 O -0.529 6.529 20 C -0.260 4.260 21 C 0.090 3.910 22 N -0.278 5.278 23 N -0.358 5.358 24 C 0.092 3.908 25 C 0.179 3.821 26 Cl 0.029 6.971 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.021 0.979 32 H 0.252 0.748 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.393 0.607 36 H 0.199 0.801 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.331 8.517 14.501 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.360 4.360 7 H 0.096 0.904 8 C -0.203 4.203 9 N -0.562 5.562 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.046 3.954 15 C 0.020 3.980 16 H 0.105 0.895 17 N -0.357 5.357 18 C 0.374 3.626 19 O -0.406 6.406 20 C -0.276 4.276 21 C -0.097 4.097 22 N -0.099 5.099 23 N -0.141 5.141 24 C -0.049 4.049 25 C 0.021 3.979 26 Cl 0.058 6.942 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.227 0.773 36 H 0.216 0.784 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.012 8.404 15.597 20.350 hybrid contribution 0.931 -0.456 -0.934 1.396 sum -9.081 7.947 14.663 18.990 Atomic orbital electron populations 1.21701 0.95080 1.01776 1.00950 1.22607 0.94765 0.99537 0.96420 0.90413 1.21586 0.87659 0.94971 0.94339 1.44419 1.08051 1.78966 1.01850 1.19042 0.87404 1.40411 0.89106 0.90372 1.24833 0.97584 1.01897 0.95938 1.69999 1.22470 1.54266 1.09474 0.86149 0.82929 0.77343 0.79670 1.21694 1.21815 1.20639 1.21489 0.90218 1.00429 0.83216 1.22456 1.00205 0.92646 0.82672 0.89472 1.45646 1.74581 1.09903 1.05591 1.16958 0.76720 0.86979 0.81942 1.90824 1.49976 1.13792 1.86013 1.20069 1.21248 0.93968 0.92319 1.24043 0.96615 0.93367 0.95634 1.77293 1.25098 1.05933 1.01595 1.48499 1.55374 1.02484 1.07734 1.22065 1.04136 1.05299 0.73368 1.22057 1.00840 0.84063 0.90958 1.98456 1.96167 1.10700 1.88915 0.93055 0.92855 0.92614 0.94021 0.96131 0.93771 0.93008 0.93579 0.77339 0.78437 0.89749 0.88278 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.31 37.16 0.35 -1.46 16 2 C -0.11 -1.87 3.25 -88.47 -0.29 -2.16 16 3 H 0.08 1.22 8.00 -51.93 -0.42 0.80 16 4 C 0.14 2.87 6.70 -2.53 -0.02 2.85 16 5 N -0.61 -15.64 3.39 -170.07 -0.58 -16.21 16 6 C -0.23 -6.54 10.27 -15.06 -0.15 -6.69 16 7 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 8 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 9 N -0.92 -27.75 10.36 55.49 0.57 -27.18 16 10 Si 0.91 22.46 29.56 -169.99 -5.02 17.44 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.17 4.31 5.13 -3.07 -0.02 4.30 16 15 C 0.12 2.39 2.70 -66.09 -0.18 2.21 16 16 H 0.09 1.77 7.59 -51.93 -0.39 1.38 16 17 N -0.71 -11.51 5.12 -53.14 -0.27 -11.78 16 18 C 0.59 10.40 7.81 -12.57 -0.10 10.30 16 19 O -0.53 -11.26 15.37 5.26 0.08 -11.18 16 20 C -0.26 -3.84 6.13 -105.02 -0.64 -4.48 16 21 C 0.09 1.08 11.50 -16.98 -0.20 0.89 16 22 N -0.28 -3.44 12.49 30.87 0.39 -3.06 16 23 N -0.36 -4.12 3.98 -64.32 -0.26 -4.37 16 24 C 0.09 0.61 11.28 59.84 0.67 1.29 16 25 C 0.18 2.45 7.53 -16.43 -0.12 2.33 16 26 Cl 0.03 0.39 27.34 -51.86 -1.42 -1.03 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.02 0.42 7.99 -51.93 -0.41 0.01 16 32 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.05 1.43 7.18 -51.93 -0.37 1.06 16 34 H 0.05 1.35 7.61 -51.92 -0.40 0.95 16 35 H 0.39 5.09 7.47 -40.82 -0.30 4.78 16 36 H 0.20 1.65 7.50 -52.48 -0.39 1.26 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.47 7.77 -51.93 -0.40 0.07 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -35.38 342.08 -7.31 -42.70 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.17 Total: 0.41 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -0.79 Total: 9.11 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -0.15 Total: -62.60 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -1.42 Total: -1.03 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.38 -7.31 -42.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079965818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.138 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds