Wall clock time and date at job start Fri Apr 10 2020 18:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.78304 * 2 1 4 4 C 1.54322 * 110.72042 * 236.75797 * 2 1 3 5 5 N 1.47021 * 107.27444 * 219.44376 * 4 2 1 6 6 C 1.36935 * 125.65026 * 178.98324 * 5 4 2 7 7 H 1.08000 * 120.00313 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99984 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99906 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99934 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47547 * 90.00199 * 10 8 6 12 12 H 1.48508 * 109.47001 * 210.00456 * 10 8 6 13 13 H 1.48500 * 109.47189 * 330.00255 * 10 8 6 14 14 C 1.47433 * 108.70091 * 358.94416 * 5 4 2 15 15 C 1.54904 * 104.83261 * 24.12504 * 14 5 4 16 16 H 1.09004 * 111.03902 * 81.08134 * 15 14 5 17 17 N 1.46495 * 111.00426 * 204.91621 * 15 14 5 18 18 C 1.34776 * 119.99911 * 267.19429 * 17 15 14 19 19 O 1.21277 * 120.00608 * 0.02562 * 18 17 15 20 20 C 1.50709 * 119.99533 * 179.97438 * 18 17 15 21 21 N 1.46504 * 109.46570 * 180.02562 * 20 18 17 22 22 C 1.35042 * 126.03793 * 125.31535 * 21 20 18 23 23 C 1.35373 * 107.73198 * 180.17872 * 22 21 20 24 24 Cl 1.73599 * 126.05147 * 179.83897 * 23 22 21 25 25 C 1.39937 * 107.90153 * 359.57173 * 23 22 21 26 26 N 1.30847 * 108.21297 * 0.26277 * 25 23 22 27 27 H 1.09003 * 109.46864 * 296.76356 * 1 2 3 28 28 H 1.08998 * 109.46973 * 56.76215 * 1 2 3 29 29 H 1.09002 * 109.47492 * 176.76120 * 1 2 3 30 30 H 1.08997 * 109.88482 * 338.86274 * 4 2 1 31 31 H 1.09005 * 109.88258 * 100.03065 * 4 2 1 32 32 H 0.97000 * 120.00153 * 179.97438 * 9 8 6 33 33 H 1.08998 * 110.36501 * 265.28385 * 14 5 4 34 34 H 1.08997 * 110.36693 * 142.96544 * 14 5 4 35 35 H 0.97007 * 120.00126 * 87.19935 * 17 15 14 36 36 H 1.08997 * 109.47159 * 60.00905 * 20 18 17 37 37 H 1.08995 * 109.46960 * 300.00009 * 20 18 17 38 38 H 1.07999 * 126.13525 * 0.02562 * 22 21 20 39 39 H 1.08004 * 125.88680 * 180.24685 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 3.2445 -1.5508 -0.7390 6 6 4.0043 -2.3969 -1.5018 7 1 3.7617 -2.5502 -2.5429 8 6 5.0871 -3.0569 -0.9370 9 7 5.3832 -2.8697 0.3317 10 14 6.1241 -4.2106 -1.9777 11 1 7.2333 -3.4487 -2.6057 12 1 6.6851 -5.2835 -1.1178 13 1 5.2781 -4.8168 -3.0370 14 6 3.4632 -1.2498 0.6876 15 6 2.0789 -0.7954 1.2138 16 1 1.4447 -1.6532 1.4380 17 7 2.2214 0.0696 2.3875 18 6 2.1872 -0.4628 3.6252 19 8 2.0389 -1.6581 3.7673 20 6 2.3344 0.4271 4.8325 21 7 2.2642 -0.3856 6.0495 22 6 3.1858 -0.4201 7.0360 23 6 2.7526 -1.2942 7.9745 24 17 3.5767 -1.7047 9.4463 25 6 1.5199 -1.8037 7.5514 26 7 1.2266 -1.2597 6.3981 27 1 -0.3633 0.4628 0.9176 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3634 -1.0260 -0.0581 30 1 1.3130 -1.4759 -1.5775 31 1 2.3741 -0.1025 -1.9977 32 1 6.1396 -3.3312 0.7264 33 1 4.1931 -0.4480 0.7985 34 1 3.7959 -2.1426 1.2170 35 1 2.3404 1.0256 2.2739 36 1 1.5314 1.1641 4.8407 37 1 3.2963 0.9380 4.7921 38 1 4.1049 0.1460 7.0690 39 1 0.9151 -2.5223 8.0847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080529761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:16 Heat of formation + Delta-G solvation = 71.911739 kcal Electronic energy + Delta-G solvation = -23470.381841 eV Core-core repulsion = 19862.948874 eV Total energy + Delta-G solvation = -3607.432967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.39676 -39.50951 -37.58189 -36.49469 -34.00620 -33.40732 -32.66059 -30.39936 -30.18210 -28.52723 -26.89029 -25.63557 -23.67096 -21.86099 -21.31772 -20.56271 -20.18275 -19.55804 -17.61467 -17.16308 -16.94050 -15.80850 -15.64541 -15.01171 -14.69609 -14.44180 -14.30319 -13.78709 -13.66000 -13.37998 -13.03282 -12.95246 -12.73612 -12.51218 -12.19393 -11.81160 -11.74699 -11.47699 -11.27440 -11.12216 -10.81591 -10.70648 -10.55671 -10.40511 -10.02057 -10.00506 -9.82079 -9.78027 -9.40158 -8.67946 -8.56065 -8.50738 -6.87122 -5.66239 -3.09720 1.57511 1.82213 2.54494 2.64560 2.76211 3.28567 3.39830 3.44678 3.47368 4.40221 4.47625 4.54634 4.72198 4.79109 4.87672 5.08752 5.26624 5.34674 5.39263 5.48937 5.50862 5.70430 5.91495 5.98598 6.10823 6.18735 6.25716 6.34040 6.42020 6.58994 6.62970 6.70304 6.89508 7.37942 7.45711 7.59096 7.71724 7.86208 8.33524 8.42829 9.18819 9.80279 10.42947 11.36891 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.003341 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.687327 B = 8377.820175 C = 9933.069977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.074 0.926 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.227 4.227 7 H 0.079 0.921 8 C -0.009 4.009 9 N -0.919 5.919 10 Si 0.915 3.085 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.149 3.851 15 C 0.121 3.879 16 H 0.093 0.907 17 N -0.711 5.711 18 C 0.496 3.504 19 O -0.504 6.504 20 C 0.116 3.884 21 N -0.351 5.351 22 C 0.074 3.926 23 C -0.186 4.186 24 Cl -0.048 7.048 25 C 0.057 3.943 26 N -0.249 5.249 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.253 0.747 33 H 0.013 0.987 34 H 0.111 0.889 35 H 0.395 0.605 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.183 0.817 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 11.321 13.128 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.092 0.908 4 C 0.014 3.986 5 N -0.329 5.329 6 C -0.355 4.355 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.567 5.567 10 Si 0.746 3.254 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.023 3.977 15 C 0.016 3.984 16 H 0.111 0.889 17 N -0.362 5.362 18 C 0.279 3.721 19 O -0.377 6.377 20 C -0.009 4.009 21 N -0.132 5.132 22 C -0.073 4.073 23 C -0.224 4.224 24 Cl -0.020 7.020 25 C -0.131 4.131 26 N -0.069 5.069 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.128 0.872 35 H 0.228 0.772 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.200 0.800 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.720 10.392 12.265 17.833 hybrid contribution 1.470 -0.067 0.137 1.478 sum -6.250 10.325 12.402 17.306 Atomic orbital electron populations 1.21740 0.94909 1.01964 1.00874 1.22430 0.95257 0.99111 0.96230 0.90800 1.21352 0.90289 0.93199 0.93729 1.44385 1.30863 1.50530 1.07155 1.19067 1.06243 1.17288 0.92903 0.90303 1.24819 0.98780 1.00535 0.96391 1.69791 1.29939 1.46093 1.10878 0.86065 0.80172 0.80273 0.78924 1.21616 1.21598 1.20615 1.22219 0.89239 1.01069 0.85171 1.22739 1.01154 0.92356 0.82167 0.88878 1.45770 1.74046 1.11018 1.05398 1.20267 0.78348 0.89264 0.84257 1.90832 1.46570 1.14801 1.85454 1.21603 1.06148 0.92145 0.81042 1.47816 1.15830 1.33951 1.15653 1.22204 0.96023 1.00301 0.88801 1.20709 0.98773 1.08449 0.94512 1.98317 1.78026 1.93103 1.32522 1.23902 0.95306 1.00476 0.93394 1.77635 1.09837 1.05900 1.13515 0.93116 0.92848 0.92451 0.95431 0.95824 0.93665 0.96939 0.87155 0.77166 0.86645 0.85468 0.79958 0.79318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.16 37.16 0.34 -1.48 16 2 C -0.11 -1.77 3.20 -88.79 -0.28 -2.05 16 3 H 0.07 1.05 8.00 -51.93 -0.42 0.63 16 4 C 0.14 2.84 6.84 -3.07 -0.02 2.82 16 5 N -0.60 -15.38 3.39 -170.07 -0.58 -15.96 16 6 C -0.23 -6.35 10.27 -15.06 -0.15 -6.50 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.32 10.09 55.49 0.56 -26.76 16 10 Si 0.92 22.32 29.55 -169.99 -5.02 17.29 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.15 3.60 5.58 -2.53 -0.01 3.59 16 15 C 0.12 2.25 2.87 -65.78 -0.19 2.06 16 16 H 0.09 1.99 7.44 -51.93 -0.39 1.60 16 17 N -0.71 -10.08 5.20 -51.73 -0.27 -10.35 16 18 C 0.50 7.59 7.86 -10.98 -0.09 7.50 16 19 O -0.50 -10.62 15.35 5.56 0.09 -10.53 16 20 C 0.12 1.16 6.99 -5.19 -0.04 1.12 16 21 N -0.35 -4.48 3.40 -62.50 -0.21 -4.69 16 22 C 0.07 0.82 11.43 -17.16 -0.20 0.62 16 23 C -0.19 -2.21 6.65 -39.97 -0.27 -2.48 16 24 Cl -0.05 -0.50 29.30 -51.86 -1.52 -2.02 16 25 C 0.06 0.73 12.02 -17.33 -0.21 0.52 16 26 N -0.25 -3.76 11.64 30.64 0.36 -3.40 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 30 H 0.03 0.56 7.76 -51.93 -0.40 0.16 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.11 3.19 5.87 -51.93 -0.31 2.88 16 35 H 0.39 4.00 8.57 -40.82 -0.35 3.65 16 36 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.13 0.80 8.07 -51.93 -0.42 0.38 16 38 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.19 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -36.16 344.35 -7.82 -43.99 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.20 Total: 1.90 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -1.21 Total: 5.36 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.14 Total: -61.17 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.52 Total: -2.02 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.16 -7.82 -43.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080529761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.898 kcal (2) G-P(sol) polarization free energy of solvation -36.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds