Wall clock time and date at job start Fri Apr 10 2020 18:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.78304 * 2 1 4 4 C 1.54322 * 110.72042 * 236.75797 * 2 1 3 5 5 N 1.47021 * 107.27444 * 219.44376 * 4 2 1 6 6 C 1.36935 * 125.65026 * 178.98324 * 5 4 2 7 7 H 1.08000 * 120.00313 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99984 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99906 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99934 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47547 * 90.00199 * 10 8 6 12 12 H 1.48508 * 109.47001 * 210.00456 * 10 8 6 13 13 H 1.48500 * 109.47189 * 330.00255 * 10 8 6 14 14 C 1.47433 * 108.70091 * 358.94416 * 5 4 2 15 15 C 1.54904 * 104.83261 * 24.12504 * 14 5 4 16 16 H 1.09004 * 111.03902 * 81.08134 * 15 14 5 17 17 N 1.46495 * 111.00426 * 204.91621 * 15 14 5 18 18 C 1.34776 * 119.99911 * 267.19429 * 17 15 14 19 19 O 1.21277 * 120.00608 * 0.02562 * 18 17 15 20 20 C 1.50709 * 119.99533 * 179.97438 * 18 17 15 21 21 N 1.46504 * 109.46570 * 180.02562 * 20 18 17 22 22 C 1.35042 * 126.03793 * 125.31535 * 21 20 18 23 23 C 1.35373 * 107.73198 * 180.17872 * 22 21 20 24 24 Cl 1.73599 * 126.05147 * 179.83897 * 23 22 21 25 25 C 1.39937 * 107.90153 * 359.57173 * 23 22 21 26 26 N 1.30847 * 108.21297 * 0.26277 * 25 23 22 27 27 H 1.09003 * 109.46864 * 296.76356 * 1 2 3 28 28 H 1.08998 * 109.46973 * 56.76215 * 1 2 3 29 29 H 1.09002 * 109.47492 * 176.76120 * 1 2 3 30 30 H 1.08997 * 109.88482 * 338.86274 * 4 2 1 31 31 H 1.09005 * 109.88258 * 100.03065 * 4 2 1 32 32 H 0.97000 * 120.00153 * 179.97438 * 9 8 6 33 33 H 1.08998 * 110.36501 * 265.28385 * 14 5 4 34 34 H 1.08997 * 110.36693 * 142.96544 * 14 5 4 35 35 H 0.97007 * 120.00126 * 87.19935 * 17 15 14 36 36 H 1.08997 * 109.47159 * 60.00905 * 20 18 17 37 37 H 1.08995 * 109.46960 * 300.00009 * 20 18 17 38 38 H 1.07999 * 126.13525 * 0.02562 * 22 21 20 39 39 H 1.08004 * 125.88680 * 180.24685 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 3.2445 -1.5508 -0.7390 6 6 4.0043 -2.3969 -1.5018 7 1 3.7617 -2.5502 -2.5429 8 6 5.0871 -3.0569 -0.9370 9 7 5.3832 -2.8697 0.3317 10 14 6.1241 -4.2106 -1.9777 11 1 7.2333 -3.4487 -2.6057 12 1 6.6851 -5.2835 -1.1178 13 1 5.2781 -4.8168 -3.0370 14 6 3.4632 -1.2498 0.6876 15 6 2.0789 -0.7954 1.2138 16 1 1.4447 -1.6532 1.4380 17 7 2.2214 0.0696 2.3875 18 6 2.1872 -0.4628 3.6252 19 8 2.0389 -1.6581 3.7673 20 6 2.3344 0.4271 4.8325 21 7 2.2642 -0.3856 6.0495 22 6 3.1858 -0.4201 7.0360 23 6 2.7526 -1.2942 7.9745 24 17 3.5767 -1.7047 9.4463 25 6 1.5199 -1.8037 7.5514 26 7 1.2266 -1.2597 6.3981 27 1 -0.3633 0.4628 0.9176 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3634 -1.0260 -0.0581 30 1 1.3130 -1.4759 -1.5775 31 1 2.3741 -0.1025 -1.9977 32 1 6.1396 -3.3312 0.7264 33 1 4.1931 -0.4480 0.7985 34 1 3.7959 -2.1426 1.2170 35 1 2.3404 1.0256 2.2739 36 1 1.5314 1.1641 4.8407 37 1 3.2963 0.9380 4.7921 38 1 4.1049 0.1460 7.0690 39 1 0.9151 -2.5223 8.0847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080529761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:15 Heat of formation + Delta-G solvation = 45.556205 kcal Electronic energy + Delta-G solvation = -23471.524703 eV Core-core repulsion = 19862.948874 eV Total energy + Delta-G solvation = -3608.575829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.30646 -40.83812 -39.12867 -37.34418 -35.66543 -34.52293 -34.10141 -32.17744 -31.09734 -29.93346 -28.19639 -27.28362 -25.29298 -23.07022 -22.20815 -21.99412 -21.62652 -20.90952 -18.95355 -18.54898 -18.27678 -17.20092 -16.92341 -16.61646 -15.82544 -15.66878 -15.46907 -15.29417 -14.84762 -14.41015 -14.40590 -14.28194 -14.15084 -13.96642 -13.41584 -13.36984 -13.04180 -12.86342 -12.66977 -12.59980 -12.34541 -12.22750 -12.04775 -11.86024 -11.66539 -11.46692 -11.43017 -11.15175 -10.78805 -10.46885 -9.99847 -9.40497 -8.91988 -7.80127 -5.26087 0.69017 0.99852 1.43009 1.45767 1.54414 1.59345 1.63259 1.79044 2.15174 2.47613 3.29820 3.51567 3.65371 3.68924 3.82184 3.90897 4.03473 4.06787 4.10802 4.17521 4.50425 4.54283 4.61609 4.63435 4.65580 4.88269 5.02374 5.07818 5.20811 5.27144 5.36274 5.43501 5.48897 5.62890 5.78607 5.80420 6.26235 6.54196 6.59148 7.05352 7.30180 7.74890 8.36670 9.20248 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.003341 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.687327 B = 8377.820175 C = 9933.069977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 H 0.105 0.895 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.240 4.240 7 H 0.085 0.915 8 C -0.069 4.069 9 N -0.949 5.949 10 Si 0.980 3.020 11 H -0.282 1.282 12 H -0.298 1.298 13 H -0.268 1.268 14 C 0.157 3.843 15 C 0.139 3.861 16 H 0.060 0.940 17 N -0.695 5.695 18 C 0.490 3.510 19 O -0.570 6.570 20 C 0.121 3.879 21 N -0.360 5.360 22 C 0.081 3.919 23 C -0.203 4.203 24 Cl -0.040 7.040 25 C 0.050 3.950 26 N -0.298 5.298 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.244 0.756 33 H -0.002 1.002 34 H 0.056 0.944 35 H 0.420 0.580 36 H 0.155 0.845 37 H 0.173 0.827 38 H 0.221 0.779 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.428 13.977 13.032 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.110 4.110 3 H 0.123 0.877 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.369 4.369 7 H 0.102 0.898 8 C -0.262 4.262 9 N -0.598 5.598 10 Si 0.808 3.192 11 H -0.208 1.208 12 H -0.224 1.224 13 H -0.193 1.193 14 C 0.030 3.970 15 C 0.033 3.967 16 H 0.078 0.922 17 N -0.348 5.348 18 C 0.276 3.724 19 O -0.448 6.448 20 C -0.003 4.003 21 N -0.142 5.142 22 C -0.066 4.066 23 C -0.241 4.241 24 Cl -0.012 7.012 25 C -0.138 4.138 26 N -0.118 5.118 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.016 0.984 34 H 0.075 0.925 35 H 0.258 0.742 36 H 0.173 0.827 37 H 0.190 0.810 38 H 0.237 0.763 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.164 13.125 12.150 19.660 hybrid contribution 1.599 -0.898 0.162 1.841 sum -6.565 12.226 12.313 18.552 Atomic orbital electron populations 1.21692 0.92254 1.01667 1.03116 1.22370 0.97202 0.99248 0.92212 0.87732 1.21626 0.88541 0.93316 0.95921 1.44702 1.32013 1.50940 1.07784 1.19485 1.06446 1.17442 0.93520 0.89758 1.25689 1.00402 1.02509 0.97565 1.70108 1.30102 1.47128 1.12475 0.85046 0.78643 0.78014 0.77456 1.20828 1.22430 1.19252 1.21878 0.92101 0.98276 0.84702 1.22094 0.97045 0.92913 0.84699 0.92219 1.45522 1.73395 1.11756 1.04115 1.21301 0.76333 0.89124 0.85652 1.90816 1.49413 1.18062 1.86462 1.21933 1.10171 0.90844 0.77324 1.48057 1.15644 1.33962 1.16527 1.22839 0.96403 0.99616 0.87768 1.20890 0.98854 1.09063 0.95332 1.98314 1.77734 1.93119 1.32026 1.24273 0.96025 1.00415 0.93044 1.77557 1.11852 1.07713 1.14702 0.91066 0.90314 0.94143 0.95608 0.94706 0.94647 0.98421 0.92545 0.74218 0.82712 0.80951 0.76286 0.77875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.16 71.98 0.66 -2.38 16 2 C -0.09 -2.71 3.20 -9.61 -0.03 -2.74 16 3 H 0.10 2.52 8.00 -2.39 -0.02 2.50 16 4 C 0.13 5.18 6.84 86.73 0.59 5.77 16 5 N -0.63 -32.66 3.39 -691.98 -2.35 -35.01 16 6 C -0.24 -13.70 10.27 84.03 0.86 -12.84 16 7 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 8 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 9 N -0.95 -58.87 10.09 21.65 0.22 -58.65 16 10 Si 0.98 46.84 29.55 68.60 2.03 48.87 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 C 0.16 7.84 5.58 86.85 0.48 8.33 16 15 C 0.14 5.18 2.87 46.38 0.13 5.31 16 16 H 0.06 2.65 7.44 -2.38 -0.02 2.63 16 17 N -0.69 -18.57 5.20 -435.96 -2.27 -20.84 16 18 C 0.49 14.54 7.86 87.66 0.69 15.23 16 19 O -0.57 -24.84 15.35 -3.02 -0.05 -24.89 16 20 C 0.12 2.03 6.99 85.64 0.60 2.63 16 21 N -0.36 -8.57 3.40 -351.66 -1.20 -9.76 16 22 C 0.08 1.61 11.43 83.54 0.95 2.57 16 23 C -0.20 -4.62 6.65 22.02 0.15 -4.48 16 24 Cl -0.04 -0.80 29.30 -2.72 -0.08 -0.88 16 25 C 0.05 1.27 12.02 85.25 1.02 2.30 16 26 N -0.30 -8.97 11.64 -56.97 -0.66 -9.63 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.09 8.06 -2.39 -0.02 1.07 16 30 H 0.03 1.03 7.76 -2.39 -0.02 1.01 16 31 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.06 3.46 5.87 -2.39 -0.01 3.45 16 35 H 0.42 6.99 8.57 -92.70 -0.79 6.20 16 36 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.17 1.33 8.07 -2.39 -0.02 1.31 16 38 H 0.22 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.20 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -85.88 344.35 2.51 -83.37 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.28 Total: 11.29 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 6.58 Total: 16.13 kcal Atomic # 7 Polarization: -127.64 SS G_CDS: -6.26 Total: -133.90 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.05 Total: -24.89 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -85.88 2.51 -83.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080529761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.927 kcal (2) G-P(sol) polarization free energy of solvation -85.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds