Wall clock time and date at job start Fri Apr 10 2020 18:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 110.88458 * 2 1 4 4 C 1.54907 * 111.00490 * 236.11336 * 2 1 3 5 5 N 1.47426 * 104.83283 * 204.91900 * 4 2 1 6 6 C 1.36929 * 125.64878 * 204.09714 * 5 4 2 7 7 H 1.08001 * 120.00163 * 6.04078 * 6 5 4 8 8 C 1.38816 * 120.00010 * 186.05116 * 6 5 4 9 9 N 1.31619 * 119.99678 * 353.14196 * 8 6 5 10 10 Si 1.86800 * 120.00295 * 173.15192 * 8 6 5 11 11 H 1.48505 * 109.46892 * 275.00716 * 10 8 6 12 12 H 1.48503 * 109.46971 * 35.00302 * 10 8 6 13 13 H 1.48489 * 109.47387 * 155.00605 * 10 8 6 14 14 C 1.47026 * 108.70065 * 24.35720 * 5 4 2 15 15 C 1.54335 * 107.26569 * 358.58838 * 14 5 4 16 16 H 1.08997 * 110.51440 * 96.45292 * 15 14 5 17 17 N 1.46508 * 110.84645 * 219.67246 * 15 14 5 18 18 C 1.34779 * 119.99731 * 268.69009 * 17 15 14 19 19 O 1.21611 * 120.00238 * 0.02562 * 18 17 15 20 20 C 1.47381 * 119.99503 * 180.02562 * 18 17 15 21 21 C 1.38070 * 126.42647 * 359.97438 * 20 18 17 22 22 N 1.34234 * 107.43691 * 179.97438 * 21 20 18 23 23 C 1.46498 * 125.73838 * 180.02562 * 22 21 20 24 24 N 1.39935 * 108.52686 * 0.02562 * 22 21 20 25 25 C 1.30537 * 108.89015 * 359.74801 * 24 22 21 26 26 Cl 1.73599 * 126.00157 * 180.26390 * 25 24 22 27 27 H 1.08997 * 109.47297 * 182.42658 * 1 2 3 28 28 H 1.09000 * 109.47723 * 302.42947 * 1 2 3 29 29 H 1.09000 * 109.46895 * 62.42790 * 1 2 3 30 30 H 1.08999 * 110.36569 * 86.08296 * 4 2 1 31 31 H 1.08999 * 110.46347 * 323.80247 * 4 2 1 32 32 H 0.97008 * 119.99739 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.88107 * 118.13295 * 14 5 4 34 34 H 1.09000 * 109.88260 * 239.29553 * 14 5 4 35 35 H 0.96995 * 120.00093 * 88.69207 * 17 15 14 36 36 H 1.07999 * 126.27939 * 359.94777 * 21 20 18 37 37 H 1.08994 * 109.47402 * 90.00150 * 23 22 21 38 38 H 1.09002 * 109.47359 * 210.00837 * 23 22 21 39 39 H 1.09012 * 109.46779 * 330.00303 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0183 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4271 -1.2429 -0.7736 6 6 4.4640 -1.5662 -1.6075 7 1 4.3664 -1.4186 -2.6729 8 6 5.6406 -2.0840 -1.0835 9 7 5.8123 -2.1385 0.2203 10 14 6.9802 -2.7031 -2.2286 11 1 6.6964 -4.1108 -2.6070 12 1 7.0157 -1.8596 -3.4504 13 1 8.2933 -2.6310 -1.5390 14 6 3.4656 -1.2797 0.6957 15 6 2.0860 -0.8084 1.2020 16 1 1.4467 -1.6637 1.4205 17 7 2.2285 0.0488 2.3816 18 6 2.2002 -0.4928 3.6155 19 8 2.0568 -1.6929 3.7497 20 6 2.3430 0.3696 4.8021 21 6 2.5120 1.7399 4.8041 22 7 2.5991 2.1325 6.0848 23 6 2.7825 3.5107 6.5467 24 7 2.4854 1.0041 6.9045 25 6 2.3275 -0.0507 6.1520 26 17 2.1352 -1.6831 6.7105 27 1 -0.3634 -1.0267 0.0435 28 1 -0.3634 0.5511 0.8674 29 1 -0.3633 0.4757 -0.9110 30 1 2.1561 -0.1714 -2.0836 31 1 1.4525 -1.6700 -1.4048 32 1 6.6343 -2.5007 0.5866 33 1 3.6600 -2.2968 1.0361 34 1 4.2423 -0.6089 1.0631 35 1 2.3432 1.0060 2.2746 36 1 2.5648 2.3786 3.9349 37 1 1.8085 3.9777 6.6923 38 1 3.3289 3.5081 7.4899 39 1 3.3467 4.0716 5.8015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080761318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:22 Heat of formation + Delta-G solvation = 68.101895 kcal Electronic energy + Delta-G solvation = -23721.427497 eV Core-core repulsion = 20113.829323 eV Total energy + Delta-G solvation = -3607.598174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56964 -39.14159 -37.32452 -36.67633 -33.83550 -33.43658 -32.62659 -30.69899 -30.33943 -27.84887 -27.04339 -25.59254 -23.85623 -22.61454 -21.34694 -20.47242 -19.96050 -19.51494 -17.82097 -16.83198 -16.19455 -16.04726 -15.65342 -15.21080 -14.90465 -14.20103 -14.11212 -13.70692 -13.60101 -13.29543 -13.17492 -12.97276 -12.72185 -12.64479 -11.88422 -11.73319 -11.69393 -11.59815 -11.31180 -11.00250 -10.78025 -10.74116 -10.57490 -10.36096 -9.93633 -9.90526 -9.69231 -9.56297 -9.43472 -8.88992 -8.54878 -8.35667 -6.78842 -5.66610 -3.00758 1.28440 1.35479 1.90054 2.55693 3.43411 3.48285 3.50335 3.58148 3.72333 4.17018 4.37890 4.53857 4.72408 4.93212 5.01061 5.08215 5.13309 5.33999 5.36366 5.47572 5.57013 5.78271 5.80603 6.02760 6.04492 6.19004 6.26291 6.38846 6.44299 6.53385 6.66039 6.84117 6.98404 7.11006 7.61322 7.65923 7.89472 7.99942 8.30086 8.70374 9.25370 9.86363 10.51974 11.44275 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.003752 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.784349 B = 7460.273445 C = 7976.420184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.233 4.233 7 H 0.078 0.922 8 C -0.005 4.005 9 N -0.916 5.916 10 Si 0.909 3.091 11 H -0.288 1.288 12 H -0.282 1.282 13 H -0.292 1.292 14 C 0.172 3.828 15 C 0.123 3.877 16 H 0.091 0.909 17 N -0.710 5.710 18 C 0.588 3.412 19 O -0.525 6.525 20 C -0.265 4.265 21 C 0.107 3.893 22 N -0.352 5.352 23 C 0.097 3.903 24 N -0.289 5.289 25 C 0.172 3.828 26 Cl 0.033 6.967 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.022 0.978 32 H 0.253 0.747 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.390 0.610 36 H 0.192 0.808 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.777 13.709 10.938 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.361 4.361 7 H 0.096 0.904 8 C -0.202 4.202 9 N -0.562 5.562 10 Si 0.739 3.261 11 H -0.215 1.215 12 H -0.208 1.208 13 H -0.218 1.218 14 C 0.047 3.953 15 C 0.018 3.982 16 H 0.109 0.891 17 N -0.360 5.360 18 C 0.373 3.627 19 O -0.401 6.401 20 C -0.280 4.280 21 C -0.044 4.044 22 N -0.133 5.133 23 C -0.043 4.043 24 N -0.114 5.114 25 C -0.021 4.021 26 Cl 0.061 6.939 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.224 0.776 36 H 0.209 0.791 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.553 13.170 12.348 20.425 hybrid contribution 0.884 -0.155 -1.320 1.597 sum -8.669 13.015 11.028 19.135 Atomic orbital electron populations 1.21691 0.95075 1.01815 1.00864 1.22608 0.94794 0.99407 0.96539 0.90612 1.21571 0.87678 0.95083 0.94228 1.44402 1.07595 1.79474 1.01813 1.19016 0.91921 1.35796 0.89398 0.90397 1.24837 0.98220 1.01189 0.95940 1.69985 1.26404 1.50400 1.09446 0.86192 0.81208 0.79075 0.79598 1.21493 1.20794 1.21781 1.21497 0.90136 1.00463 0.83247 1.22483 1.00277 0.92768 0.82623 0.89134 1.45698 1.74406 1.10515 1.05343 1.17022 0.76816 0.87028 0.81798 1.90824 1.49122 1.14181 1.85930 1.20324 1.21114 0.92728 0.93871 1.23139 0.97353 0.94972 0.88922 1.48142 1.54142 1.07122 1.03866 1.22072 1.03625 0.75702 1.02928 1.77216 1.25997 0.91205 1.16955 1.22685 0.99441 0.89080 0.90848 1.98432 1.95209 1.10787 1.89454 0.92571 0.93175 0.92853 0.94133 0.96027 0.93682 0.93127 0.93528 0.77625 0.79139 0.89955 0.88645 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.30 37.16 0.35 -1.43 16 2 C -0.11 -1.84 3.27 -88.47 -0.29 -2.13 16 3 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 4 C 0.14 2.83 6.70 -2.53 -0.02 2.82 16 5 N -0.61 -15.47 3.39 -170.06 -0.58 -16.05 16 6 C -0.23 -6.53 10.26 -15.06 -0.15 -6.68 16 7 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 8 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 9 N -0.92 -27.58 10.36 55.49 0.57 -27.00 16 10 Si 0.91 22.34 29.56 -169.99 -5.02 17.32 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 14 C 0.17 4.26 5.14 -3.06 -0.02 4.25 16 15 C 0.12 2.33 2.78 -66.08 -0.18 2.15 16 16 H 0.09 1.85 7.42 -51.93 -0.39 1.46 16 17 N -0.71 -11.22 5.10 -53.10 -0.27 -11.49 16 18 C 0.59 10.30 7.81 -12.54 -0.10 10.21 16 19 O -0.52 -11.25 15.36 5.27 0.08 -11.17 16 20 C -0.26 -3.87 6.13 -105.04 -0.64 -4.51 16 21 C 0.11 1.08 10.99 -16.56 -0.18 0.90 16 22 N -0.35 -3.51 3.98 -67.60 -0.27 -3.78 16 23 C 0.10 0.45 11.44 59.85 0.68 1.13 16 24 N -0.29 -3.95 12.50 33.18 0.41 -3.54 16 25 C 0.17 2.64 7.88 -16.90 -0.13 2.50 16 26 Cl 0.03 0.52 28.00 -51.86 -1.45 -0.94 16 27 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 32 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.05 1.47 7.39 -51.93 -0.38 1.09 16 34 H 0.05 1.26 7.41 -51.93 -0.38 0.88 16 35 H 0.39 4.76 7.48 -40.82 -0.31 4.45 16 36 H 0.19 1.08 7.46 -52.49 -0.39 0.69 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.20 8.14 -51.92 -0.42 -0.22 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -36.26 343.08 -7.32 -43.59 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.19 Total: -1.06 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -0.78 Total: 8.96 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.13 Total: -61.86 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -1.45 Total: -0.94 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.26 -7.32 -43.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080761318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.688 kcal (2) G-P(sol) polarization free energy of solvation -36.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds