Wall clock time and date at job start Fri Apr 10 2020 18:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 110.88458 * 2 1 4 4 C 1.54907 * 111.00490 * 236.11336 * 2 1 3 5 5 N 1.47426 * 104.83283 * 204.91900 * 4 2 1 6 6 C 1.36929 * 125.64878 * 204.09714 * 5 4 2 7 7 H 1.08001 * 120.00163 * 6.04078 * 6 5 4 8 8 C 1.38816 * 120.00010 * 186.05116 * 6 5 4 9 9 N 1.31619 * 119.99678 * 353.14196 * 8 6 5 10 10 Si 1.86800 * 120.00295 * 173.15192 * 8 6 5 11 11 H 1.48505 * 109.46892 * 275.00716 * 10 8 6 12 12 H 1.48503 * 109.46971 * 35.00302 * 10 8 6 13 13 H 1.48489 * 109.47387 * 155.00605 * 10 8 6 14 14 C 1.47026 * 108.70065 * 24.35720 * 5 4 2 15 15 C 1.54335 * 107.26569 * 358.58838 * 14 5 4 16 16 H 1.08997 * 110.51440 * 96.45292 * 15 14 5 17 17 N 1.46508 * 110.84645 * 219.67246 * 15 14 5 18 18 C 1.34779 * 119.99731 * 268.69009 * 17 15 14 19 19 O 1.21611 * 120.00238 * 0.02562 * 18 17 15 20 20 C 1.47381 * 119.99503 * 180.02562 * 18 17 15 21 21 C 1.38070 * 126.42647 * 359.97438 * 20 18 17 22 22 N 1.34234 * 107.43691 * 179.97438 * 21 20 18 23 23 C 1.46498 * 125.73838 * 180.02562 * 22 21 20 24 24 N 1.39935 * 108.52686 * 0.02562 * 22 21 20 25 25 C 1.30537 * 108.89015 * 359.74801 * 24 22 21 26 26 Cl 1.73599 * 126.00157 * 180.26390 * 25 24 22 27 27 H 1.08997 * 109.47297 * 182.42658 * 1 2 3 28 28 H 1.09000 * 109.47723 * 302.42947 * 1 2 3 29 29 H 1.09000 * 109.46895 * 62.42790 * 1 2 3 30 30 H 1.08999 * 110.36569 * 86.08296 * 4 2 1 31 31 H 1.08999 * 110.46347 * 323.80247 * 4 2 1 32 32 H 0.97008 * 119.99739 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.88107 * 118.13295 * 14 5 4 34 34 H 1.09000 * 109.88260 * 239.29553 * 14 5 4 35 35 H 0.96995 * 120.00093 * 88.69207 * 17 15 14 36 36 H 1.07999 * 126.27939 * 359.94777 * 21 20 18 37 37 H 1.08994 * 109.47402 * 90.00150 * 23 22 21 38 38 H 1.09002 * 109.47359 * 210.00837 * 23 22 21 39 39 H 1.09012 * 109.46779 * 330.00303 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0183 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4271 -1.2429 -0.7736 6 6 4.4640 -1.5662 -1.6075 7 1 4.3664 -1.4186 -2.6729 8 6 5.6406 -2.0840 -1.0835 9 7 5.8123 -2.1385 0.2203 10 14 6.9802 -2.7031 -2.2286 11 1 6.6964 -4.1108 -2.6070 12 1 7.0157 -1.8596 -3.4504 13 1 8.2933 -2.6310 -1.5390 14 6 3.4656 -1.2797 0.6957 15 6 2.0860 -0.8084 1.2020 16 1 1.4467 -1.6637 1.4205 17 7 2.2285 0.0488 2.3816 18 6 2.2002 -0.4928 3.6155 19 8 2.0568 -1.6929 3.7497 20 6 2.3430 0.3696 4.8021 21 6 2.5120 1.7399 4.8041 22 7 2.5991 2.1325 6.0848 23 6 2.7825 3.5107 6.5467 24 7 2.4854 1.0041 6.9045 25 6 2.3275 -0.0507 6.1520 26 17 2.1352 -1.6831 6.7105 27 1 -0.3634 -1.0267 0.0435 28 1 -0.3634 0.5511 0.8674 29 1 -0.3633 0.4757 -0.9110 30 1 2.1561 -0.1714 -2.0836 31 1 1.4525 -1.6700 -1.4048 32 1 6.6343 -2.5007 0.5866 33 1 3.6600 -2.2968 1.0361 34 1 4.2423 -0.6089 1.0631 35 1 2.3432 1.0060 2.2746 36 1 2.5648 2.3786 3.9349 37 1 1.8085 3.9777 6.6923 38 1 3.3289 3.5081 7.4899 39 1 3.3467 4.0716 5.8015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080761318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:20 Heat of formation + Delta-G solvation = 41.059890 kcal Electronic energy + Delta-G solvation = -23722.600127 eV Core-core repulsion = 20113.829323 eV Total energy + Delta-G solvation = -3608.770804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.52135 -40.58419 -38.90204 -37.80379 -35.55557 -34.30989 -34.16481 -32.16877 -31.72563 -29.38180 -27.91147 -27.28290 -25.43847 -23.87221 -22.34620 -21.97322 -21.44496 -20.87900 -18.92378 -18.80141 -17.41315 -17.00498 -16.90856 -16.79288 -16.15856 -15.69865 -15.40875 -15.32775 -14.71301 -14.51867 -14.39445 -14.10199 -13.98252 -13.59609 -13.51573 -13.29708 -13.01142 -12.87012 -12.64593 -12.60289 -12.54997 -12.17089 -11.98245 -11.88168 -11.80867 -11.60185 -11.41176 -10.85603 -10.69363 -10.51498 -10.03733 -9.70363 -8.88132 -7.83146 -5.19384 0.39527 0.41824 0.75747 1.45383 1.49263 1.56581 1.73949 2.26061 2.44332 2.52156 3.35478 3.36920 3.63124 3.77801 3.81307 4.12893 4.13647 4.17956 4.24191 4.46248 4.47559 4.59077 4.68667 4.75322 4.79651 4.80635 4.93657 5.12532 5.14095 5.29942 5.34253 5.50667 5.56493 5.69480 5.74818 5.85433 6.15777 6.20186 6.72863 7.09704 7.41640 7.79538 8.43726 9.26293 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.003752 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.784349 B = 7460.273445 C = 7976.420184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 H 0.099 0.901 4 C 0.131 3.869 5 N -0.627 5.627 6 C -0.242 4.242 7 H 0.089 0.911 8 C -0.067 4.067 9 N -0.951 5.951 10 Si 0.976 3.024 11 H -0.289 1.289 12 H -0.262 1.262 13 H -0.297 1.297 14 C 0.187 3.813 15 C 0.140 3.860 16 H 0.071 0.929 17 N -0.694 5.694 18 C 0.586 3.414 19 O -0.576 6.576 20 C -0.305 4.305 21 C 0.143 3.857 22 N -0.339 5.339 23 C 0.083 3.917 24 N -0.309 5.309 25 C 0.152 3.848 26 Cl 0.012 6.988 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.021 0.979 32 H 0.243 0.757 33 H -0.011 1.011 34 H 0.017 0.983 35 H 0.412 0.588 36 H 0.244 0.756 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.836 17.575 9.829 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.117 0.883 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.371 4.371 7 H 0.107 0.893 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.804 3.196 11 H -0.216 1.216 12 H -0.187 1.187 13 H -0.224 1.224 14 C 0.061 3.939 15 C 0.034 3.966 16 H 0.089 0.911 17 N -0.346 5.346 18 C 0.374 3.626 19 O -0.456 6.456 20 C -0.321 4.321 21 C -0.010 4.010 22 N -0.118 5.118 23 C -0.055 4.055 24 N -0.134 5.134 25 C -0.040 4.040 26 Cl 0.040 6.960 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.007 0.993 34 H 0.035 0.965 35 H 0.249 0.751 36 H 0.260 0.740 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.648 17.117 11.238 23.079 hybrid contribution 1.207 -1.233 -0.956 1.972 sum -9.441 15.884 10.282 21.146 Atomic orbital electron populations 1.21651 0.91882 1.01987 1.03139 1.22530 0.97122 0.99099 0.92316 0.88313 1.21859 0.85155 0.95795 0.96557 1.44717 1.09249 1.79442 1.01996 1.19496 0.92558 1.34734 0.90323 0.89349 1.25704 1.00902 1.02069 0.97310 1.70246 1.26513 1.51783 1.11402 0.85133 0.77888 0.78377 0.78203 1.21631 1.18668 1.22422 1.21129 0.92879 0.96508 0.83410 1.22010 0.96280 0.93616 0.84736 0.91052 1.45417 1.73936 1.11230 1.03985 1.17487 0.75540 0.86780 0.82822 1.90794 1.51482 1.16632 1.86702 1.20138 1.25179 0.94532 0.92202 1.23776 0.93435 0.93489 0.90298 1.48656 1.51637 1.07879 1.03636 1.22639 1.05660 0.72902 1.04270 1.77155 1.26389 0.91911 1.17983 1.22793 1.00818 0.88822 0.91568 1.98410 1.95389 1.12560 1.89646 0.93561 0.91020 0.90409 0.92545 0.96068 0.94730 0.99282 0.96529 0.75052 0.73990 0.87694 0.88447 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.30 71.98 0.67 -2.19 16 2 C -0.09 -2.71 3.27 -9.40 -0.03 -2.74 16 3 H 0.10 2.55 8.01 -2.39 -0.02 2.53 16 4 C 0.13 5.10 6.70 86.85 0.58 5.68 16 5 N -0.63 -32.47 3.39 -691.95 -2.35 -34.81 16 6 C -0.24 -13.69 10.26 84.04 0.86 -12.83 16 7 H 0.09 4.68 7.84 -2.91 -0.02 4.66 16 8 C -0.07 -3.91 5.48 84.86 0.47 -3.44 16 9 N -0.95 -59.97 10.36 21.65 0.22 -59.75 16 10 Si 0.98 46.74 29.56 68.60 2.03 48.77 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 13 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 14 C 0.19 9.68 5.14 86.73 0.45 10.12 16 15 C 0.14 5.30 2.78 46.18 0.13 5.43 16 16 H 0.07 3.01 7.42 -2.39 -0.02 2.99 16 17 N -0.69 -21.27 5.10 -440.18 -2.24 -23.51 16 18 C 0.59 20.78 7.81 86.65 0.68 21.46 16 19 O -0.58 -26.17 15.36 -4.06 -0.06 -26.23 16 20 C -0.30 -8.65 6.13 -20.13 -0.12 -8.78 16 21 C 0.14 2.37 10.99 84.29 0.93 3.30 16 22 N -0.34 -5.63 3.98 -367.77 -1.46 -7.09 16 23 C 0.08 0.39 11.44 127.77 1.46 1.85 16 24 N -0.31 -8.12 12.50 -48.95 -0.61 -8.73 16 25 C 0.15 4.69 7.88 85.66 0.67 5.37 16 26 Cl 0.01 0.40 28.00 -2.72 -0.08 0.32 16 27 H 0.05 1.13 8.11 -2.39 -0.02 1.12 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.02 0.84 8.04 -2.39 -0.02 0.82 16 32 H 0.24 15.11 8.31 -92.70 -0.77 14.34 16 33 H -0.01 -0.70 7.39 -2.38 -0.02 -0.72 16 34 H 0.02 0.94 7.41 -2.39 -0.02 0.92 16 35 H 0.41 8.71 7.48 -92.71 -0.69 8.02 16 36 H 0.24 1.23 7.46 -2.91 -0.02 1.21 16 37 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.13 -0.24 8.14 -2.38 -0.02 -0.26 16 Total: -1.00 -87.14 343.08 2.57 -84.58 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 0.38 Total: 3.23 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 6.74 Total: 23.22 kcal Atomic # 7 Polarization: -127.45 SS G_CDS: -6.44 Total: -133.89 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.06 Total: -26.23 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.08 Total: 0.32 kcal Total: -87.14 2.57 -84.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080761318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.635 kcal (2) G-P(sol) polarization free energy of solvation -87.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds