Wall clock time and date at job start Fri Apr 10 2020 18:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46989 * 2 1 4 4 N 1.31234 * 124.05789 * 270.16853 * 3 2 1 5 5 N 1.27338 * 120.03921 * 180.34359 * 4 3 2 6 6 S 1.56636 * 109.74203 * 359.70929 * 5 4 3 7 7 C 1.38247 * 124.05467 * 89.99928 * 3 2 1 8 8 C 1.47171 * 128.47797 * 359.97438 * 7 3 2 9 9 O 1.21623 * 119.99772 * 359.69803 * 8 7 3 10 10 N 1.34776 * 120.00320 * 179.70336 * 8 7 3 11 11 C 1.46503 * 120.00155 * 179.97438 * 10 8 7 12 12 H 1.08996 * 110.77897 * 36.78476 * 11 10 8 13 13 C 1.54325 * 110.71811 * 273.54768 * 11 10 8 14 14 N 1.47026 * 107.26658 * 263.82756 * 13 11 10 15 15 C 1.36935 * 125.64458 * 181.02332 * 14 13 11 16 16 H 1.08000 * 120.00518 * 359.73057 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47361 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46860 * 120.00310 * 19 17 15 22 22 H 1.48500 * 109.47264 * 240.00123 * 19 17 15 23 23 C 1.47421 * 108.70759 * 1.28889 * 14 13 11 24 24 C 1.55132 * 104.71877 * 335.55192 * 23 14 13 25 25 H 1.08993 * 111.22930 * 279.17590 * 24 23 14 26 26 O 1.42910 * 110.90254 * 155.27238 * 24 23 14 27 27 H 1.08997 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47266 * 300.00128 * 1 2 3 29 29 H 1.08997 * 109.46763 * 60.00566 * 1 2 3 30 30 H 1.08999 * 109.47550 * 239.99784 * 2 1 3 31 31 H 1.08997 * 109.46763 * 119.99434 * 2 1 3 32 32 H 0.96996 * 119.99849 * 359.97438 * 10 8 7 33 33 H 1.09002 * 109.88174 * 144.41763 * 13 11 10 34 34 H 1.09001 * 110.01556 * 23.31551 * 13 11 10 35 35 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 36 36 H 1.09001 * 110.36459 * 94.47935 * 23 14 13 37 37 H 1.09000 * 110.37050 * 216.80786 * 23 14 13 38 38 H 0.96700 * 113.99676 * 67.98187 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2743 2.1148 -1.0872 5 7 2.7041 3.3101 -0.9980 6 16 2.8495 3.7090 0.5097 7 6 2.2903 2.1507 1.1454 8 6 2.1426 1.7344 2.5492 9 8 1.7412 0.6171 2.8131 10 7 2.4520 2.5913 3.5424 11 6 2.3044 2.1770 4.9399 12 1 2.5758 1.1286 5.0631 13 6 0.8649 2.4303 5.4353 14 7 0.8640 3.7265 6.1293 15 6 -0.2188 4.3072 6.7338 16 1 -1.1764 3.8081 6.7214 17 6 -0.0867 5.5399 7.3584 18 7 1.0791 6.1506 7.3691 19 14 -1.5640 6.3323 8.1825 20 1 -2.7483 5.4494 8.0307 21 1 -1.2776 6.5318 9.6260 22 1 -1.8402 7.6456 7.5466 23 6 2.2202 4.3004 6.0610 24 6 3.1565 3.0779 5.8725 25 1 3.3532 2.5812 6.8225 26 8 4.3770 3.4636 5.2369 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.7725 3.4823 3.3320 33 1 0.5658 1.6406 6.1245 34 1 0.1793 2.4627 4.5886 35 1 1.1712 7.0121 7.8052 36 1 2.3027 4.9788 5.2119 37 1 2.4590 4.8210 6.9883 38 1 4.9429 4.0276 5.7816 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083615276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:37 Heat of formation + Delta-G solvation = 16.016624 kcal Electronic energy + Delta-G solvation = -24004.137163 eV Core-core repulsion = 20396.324109 eV Total energy + Delta-G solvation = -3607.813055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09246 -39.71677 -37.87735 -35.20444 -34.48903 -33.95421 -31.91913 -30.56282 -28.70877 -27.67424 -26.96615 -24.66273 -24.00531 -22.53178 -20.62640 -20.39925 -19.99915 -18.50950 -17.66963 -17.03575 -16.81445 -16.09093 -15.80682 -14.99480 -14.83769 -14.60342 -14.36763 -14.22918 -13.94540 -13.16569 -13.09591 -12.91610 -12.62300 -12.52034 -12.41884 -12.17341 -11.54782 -11.46291 -11.25946 -11.07379 -11.00684 -10.95091 -10.41077 -10.29389 -10.16180 -9.99834 -9.91978 -9.87003 -9.82781 -9.32052 -8.92536 -8.76504 -7.01362 -5.80920 -3.23138 -0.34526 0.73346 1.38529 1.85176 3.00803 3.06961 3.31800 3.38422 3.40242 3.76441 4.28337 4.44988 4.46842 4.77576 5.02929 5.14320 5.21003 5.23621 5.29015 5.42595 5.56133 5.67607 5.73626 5.82118 5.99189 6.03672 6.09050 6.16286 6.28049 6.52461 6.78013 7.15700 7.43450 7.48858 7.60030 7.63092 7.93378 8.12912 8.19343 9.05743 9.66113 10.27697 11.23373 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.003852 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.852801 B = 7267.645105 C = 7421.742874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C 0.098 3.902 4 N -0.251 5.251 5 N -0.261 5.261 6 S 0.424 5.576 7 C -0.282 4.282 8 C 0.600 3.400 9 O -0.521 6.521 10 N -0.687 5.687 11 C 0.145 3.855 12 H 0.097 0.903 13 C 0.126 3.874 14 N -0.600 5.600 15 C -0.223 4.223 16 H 0.081 0.919 17 C -0.009 4.009 18 N -0.924 5.924 19 Si 0.916 3.084 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.126 3.874 24 C 0.063 3.937 25 H 0.075 0.925 26 O -0.567 6.567 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.405 0.595 33 H 0.040 0.960 34 H 0.033 0.967 35 H 0.253 0.747 36 H 0.021 0.979 37 H 0.113 0.887 38 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 -7.306 -10.011 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C -0.049 4.049 4 N -0.117 5.117 5 N -0.242 5.242 6 S 0.561 5.439 7 C -0.423 4.423 8 C 0.383 3.617 9 O -0.398 6.398 10 N -0.337 5.337 11 C 0.040 3.960 12 H 0.114 0.886 13 C -0.001 4.001 14 N -0.328 5.328 15 C -0.351 4.351 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.572 5.572 19 Si 0.747 3.253 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.001 3.999 24 C 0.003 3.997 25 H 0.093 0.907 26 O -0.372 6.372 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.240 0.760 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.131 0.869 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.911 -6.722 -11.305 14.420 hybrid contribution -0.825 0.201 1.290 1.544 sum 5.086 -6.522 -10.015 12.988 Atomic orbital electron populations 1.21667 0.93365 1.02621 1.02323 1.20282 0.96962 0.86431 1.04862 1.22951 0.97151 0.99734 0.85059 1.70594 1.13958 0.99102 1.28038 1.78827 1.18688 1.10654 1.16003 1.82757 1.45695 1.14470 1.00997 1.27852 1.14223 0.99983 1.00239 1.16401 0.78371 0.85090 0.81851 1.90789 1.46306 1.19762 1.82943 1.45585 1.65556 1.16866 1.05734 1.22120 0.96262 0.98857 0.78795 0.88551 1.21758 0.92796 0.89999 0.95550 1.44345 1.07119 1.17683 1.63622 1.19150 0.88354 1.00715 1.26859 0.90154 1.24779 0.97434 0.97204 1.01058 1.69731 1.21910 1.16678 1.48929 0.85968 0.81377 0.79077 0.78896 1.20443 1.21624 1.21689 1.22640 0.82870 0.91093 1.03345 1.23775 0.84318 0.97806 0.93812 0.90704 1.86319 1.32239 1.72235 1.46439 0.91332 0.91959 0.92674 0.89667 0.87538 0.75990 0.94234 0.94915 0.93638 0.96104 0.86938 0.77188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.90 37.16 0.37 -1.16 16 2 C -0.04 -0.51 5.95 -27.88 -0.17 -0.67 16 3 C 0.10 1.32 6.25 -82.84 -0.52 0.81 16 4 N -0.25 -3.57 11.54 33.42 0.39 -3.18 16 5 N -0.26 -3.60 12.51 60.35 0.75 -2.85 16 6 S 0.42 5.09 23.05 -107.50 -2.48 2.61 16 7 C -0.28 -3.90 6.81 -35.95 -0.24 -4.15 16 8 C 0.60 9.36 7.80 -12.63 -0.10 9.26 16 9 O -0.52 -8.96 14.63 5.26 0.08 -8.89 16 10 N -0.69 -10.84 4.78 -53.18 -0.25 -11.09 16 11 C 0.14 2.46 3.13 -66.09 -0.21 2.25 16 12 H 0.10 1.57 7.70 -51.93 -0.40 1.17 16 13 C 0.13 2.52 6.98 -3.06 -0.02 2.50 16 14 N -0.60 -14.24 3.39 -169.93 -0.58 -14.81 16 15 C -0.22 -5.88 10.27 -15.06 -0.15 -6.03 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 18 N -0.92 -25.10 10.08 55.49 0.56 -24.54 16 19 Si 0.92 21.16 29.55 -169.99 -5.02 16.13 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.13 2.71 5.62 -2.41 -0.01 2.70 16 24 C 0.06 1.06 4.23 -24.46 -0.10 0.96 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 O -0.57 -8.14 12.63 -35.23 -0.44 -8.58 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.11 1.29 6.48 -51.93 -0.34 0.95 16 32 H 0.40 6.10 7.63 -40.82 -0.31 5.79 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.69 8.05 -51.93 -0.42 0.27 16 35 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.11 2.73 5.85 -51.93 -0.30 2.43 16 38 H 0.38 4.07 9.12 45.56 0.42 4.49 16 LS Contribution 333.85 15.07 5.03 5.03 Total: -1.00 -30.13 333.85 -7.08 -37.22 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -3.86 Total: 6.84 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -1.25 Total: 6.11 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.87 Total: -56.48 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.37 Total: -17.47 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -2.48 Total: 2.61 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.13 -7.08 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083615276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.232 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds