Wall clock time and date at job start Fri Apr 10 2020 18:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46989 * 2 1 4 4 N 1.31234 * 124.05789 * 270.16853 * 3 2 1 5 5 N 1.27338 * 120.03921 * 180.34359 * 4 3 2 6 6 S 1.56636 * 109.74203 * 359.70929 * 5 4 3 7 7 C 1.38247 * 124.05467 * 89.99928 * 3 2 1 8 8 C 1.47171 * 128.47797 * 359.97438 * 7 3 2 9 9 O 1.21623 * 119.99772 * 359.69803 * 8 7 3 10 10 N 1.34776 * 120.00320 * 179.70336 * 8 7 3 11 11 C 1.46503 * 120.00155 * 179.97438 * 10 8 7 12 12 H 1.08996 * 110.77897 * 36.78476 * 11 10 8 13 13 C 1.54325 * 110.71811 * 273.54768 * 11 10 8 14 14 N 1.47026 * 107.26658 * 263.82756 * 13 11 10 15 15 C 1.36935 * 125.64458 * 181.02332 * 14 13 11 16 16 H 1.08000 * 120.00518 * 359.73057 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47361 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46860 * 120.00310 * 19 17 15 22 22 H 1.48500 * 109.47264 * 240.00123 * 19 17 15 23 23 C 1.47421 * 108.70759 * 1.28889 * 14 13 11 24 24 C 1.55132 * 104.71877 * 335.55192 * 23 14 13 25 25 H 1.08993 * 111.22930 * 279.17590 * 24 23 14 26 26 O 1.42910 * 110.90254 * 155.27238 * 24 23 14 27 27 H 1.08997 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47266 * 300.00128 * 1 2 3 29 29 H 1.08997 * 109.46763 * 60.00566 * 1 2 3 30 30 H 1.08999 * 109.47550 * 239.99784 * 2 1 3 31 31 H 1.08997 * 109.46763 * 119.99434 * 2 1 3 32 32 H 0.96996 * 119.99849 * 359.97438 * 10 8 7 33 33 H 1.09002 * 109.88174 * 144.41763 * 13 11 10 34 34 H 1.09001 * 110.01556 * 23.31551 * 13 11 10 35 35 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 36 36 H 1.09001 * 110.36459 * 94.47935 * 23 14 13 37 37 H 1.09000 * 110.37050 * 216.80786 * 23 14 13 38 38 H 0.96700 * 113.99676 * 67.98187 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2743 2.1148 -1.0872 5 7 2.7041 3.3101 -0.9980 6 16 2.8495 3.7090 0.5097 7 6 2.2903 2.1507 1.1454 8 6 2.1426 1.7344 2.5492 9 8 1.7412 0.6171 2.8131 10 7 2.4520 2.5913 3.5424 11 6 2.3044 2.1770 4.9399 12 1 2.5758 1.1286 5.0631 13 6 0.8649 2.4303 5.4353 14 7 0.8640 3.7265 6.1293 15 6 -0.2188 4.3072 6.7338 16 1 -1.1764 3.8081 6.7214 17 6 -0.0867 5.5399 7.3584 18 7 1.0791 6.1506 7.3691 19 14 -1.5640 6.3323 8.1825 20 1 -2.7483 5.4494 8.0307 21 1 -1.2776 6.5318 9.6260 22 1 -1.8402 7.6456 7.5466 23 6 2.2202 4.3004 6.0610 24 6 3.1565 3.0779 5.8725 25 1 3.3532 2.5812 6.8225 26 8 4.3770 3.4636 5.2369 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.7725 3.4823 3.3320 33 1 0.5658 1.6406 6.1245 34 1 0.1793 2.4627 4.5886 35 1 1.1712 7.0121 7.8052 36 1 2.3027 4.9788 5.2119 37 1 2.4590 4.8210 6.9883 38 1 4.9429 4.0276 5.7816 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083615276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:36 Heat of formation + Delta-G solvation = -7.033512 kcal Electronic energy + Delta-G solvation = -24005.136692 eV Core-core repulsion = 20396.324109 eV Total energy + Delta-G solvation = -3608.812584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.15682 -41.02609 -39.28842 -36.62498 -35.60779 -35.27149 -33.65049 -31.68741 -30.25322 -29.05442 -28.34308 -26.39615 -25.03977 -23.66625 -22.28922 -21.62243 -21.38478 -19.54427 -19.13681 -18.53086 -18.20353 -17.23698 -17.15997 -16.66064 -16.01784 -15.93015 -15.65305 -15.45279 -15.12703 -14.73114 -14.60140 -14.11232 -14.06805 -13.88194 -13.55653 -13.18206 -13.16213 -12.88348 -12.77140 -12.71471 -12.43324 -12.01714 -11.95514 -11.93047 -11.64600 -11.47890 -11.12823 -10.98086 -10.86161 -10.82616 -10.74505 -10.19961 -8.92247 -7.80022 -5.24220 -1.41244 -0.29172 0.35393 0.78704 1.47822 1.49334 1.58507 1.79422 1.85416 2.47333 2.74749 3.08831 3.31771 3.42248 3.59903 3.68140 3.81917 4.01260 4.07138 4.32847 4.34141 4.35462 4.53561 4.63358 4.79224 4.83766 4.90886 5.00113 5.14241 5.29343 5.38054 5.43094 5.49643 5.74383 6.25473 6.28135 6.52071 6.85226 6.94978 7.09540 7.73387 8.34667 9.21188 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.003852 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.852801 B = 7267.645105 C = 7421.742874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 C 0.102 3.898 4 N -0.267 5.267 5 N -0.278 5.278 6 S 0.483 5.517 7 C -0.307 4.307 8 C 0.604 3.396 9 O -0.538 6.538 10 N -0.687 5.687 11 C 0.153 3.847 12 H 0.111 0.889 13 C 0.126 3.874 14 N -0.618 5.618 15 C -0.239 4.239 16 H 0.077 0.923 17 C -0.057 4.057 18 N -0.943 5.943 19 Si 0.975 3.025 20 H -0.272 1.272 21 H -0.289 1.289 22 H -0.294 1.294 23 C 0.132 3.868 24 C 0.088 3.912 25 H 0.089 0.911 26 O -0.562 6.562 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.408 0.592 33 H 0.044 0.956 34 H 0.020 0.980 35 H 0.249 0.751 36 H 0.001 0.999 37 H 0.085 0.915 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.439 -7.897 -10.519 14.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C -0.046 4.046 4 N -0.131 5.131 5 N -0.259 5.259 6 S 0.619 5.381 7 C -0.447 4.447 8 C 0.388 3.612 9 O -0.417 6.417 10 N -0.338 5.338 11 C 0.048 3.952 12 H 0.129 0.871 13 C -0.001 4.001 14 N -0.346 5.346 15 C -0.368 4.368 16 H 0.095 0.905 17 C -0.250 4.250 18 N -0.592 5.592 19 Si 0.804 3.196 20 H -0.196 1.196 21 H -0.216 1.216 22 H -0.221 1.221 23 C 0.006 3.994 24 C 0.027 3.973 25 H 0.107 0.893 26 O -0.369 6.369 27 H 0.107 0.893 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.244 0.756 33 H 0.062 0.938 34 H 0.038 0.962 35 H 0.059 0.941 36 H 0.019 0.981 37 H 0.102 0.898 38 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 6.422 -7.318 -11.831 15.322 hybrid contribution -0.956 0.426 1.417 1.761 sum 5.467 -6.892 -10.414 13.632 Atomic orbital electron populations 1.21638 0.92956 1.03647 1.01288 1.20374 0.97202 0.85484 1.05496 1.23270 0.96231 1.00401 0.84722 1.70651 1.14823 0.99290 1.28377 1.78671 1.18939 1.10851 1.17434 1.82539 1.43645 1.12582 0.99298 1.27729 1.15998 1.01510 0.99509 1.16517 0.77641 0.84710 0.82355 1.90774 1.46985 1.20500 1.83424 1.45536 1.65771 1.17120 1.05360 1.21960 0.94198 0.99632 0.79405 0.87117 1.21836 0.94807 0.88563 0.94866 1.44564 1.07400 1.18879 1.63742 1.19421 0.89252 1.01118 1.26987 0.90467 1.25482 0.99746 0.97804 1.01944 1.69947 1.23183 1.16602 1.49479 0.85063 0.78996 0.77880 0.77681 1.19638 1.21591 1.22071 1.22448 0.83231 0.92694 1.00985 1.23367 0.84280 0.95225 0.94464 0.89347 1.86298 1.31212 1.72650 1.46781 0.89339 0.94142 0.92429 0.87630 0.88210 0.75629 0.93809 0.96229 0.94129 0.98112 0.89757 0.75036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.90 71.98 0.71 -2.10 16 2 C -0.04 -0.96 5.95 29.85 0.18 -0.78 16 3 C 0.10 2.62 6.25 42.65 0.27 2.89 16 4 N -0.27 -7.22 11.54 -48.19 -0.56 -7.78 16 5 N -0.28 -7.28 12.51 37.02 0.46 -6.82 16 6 S 0.48 10.85 23.05 -56.49 -1.30 9.55 16 7 C -0.31 -8.14 6.81 24.62 0.17 -7.97 16 8 C 0.60 18.21 7.80 86.59 0.68 18.88 16 9 O -0.54 -18.06 14.63 -4.10 -0.06 -18.12 16 10 N -0.69 -20.86 4.78 -440.42 -2.10 -22.96 16 11 C 0.15 5.01 3.13 46.18 0.14 5.15 16 12 H 0.11 3.38 7.70 -2.39 -0.02 3.36 16 13 C 0.13 4.99 6.98 86.73 0.61 5.60 16 14 N -0.62 -29.47 3.39 -691.53 -2.35 -31.81 16 15 C -0.24 -12.71 10.27 84.04 0.86 -11.85 16 16 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 17 C -0.06 -3.02 5.49 84.86 0.47 -2.55 16 18 N -0.94 -51.83 10.08 21.65 0.22 -51.61 16 19 Si 0.97 43.62 29.55 68.60 2.03 45.65 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 C 0.13 5.67 5.62 86.93 0.49 6.16 16 24 C 0.09 2.80 4.23 32.06 0.14 2.93 16 25 H 0.09 2.65 8.14 -2.39 -0.02 2.64 16 26 O -0.56 -14.79 12.63 -148.98 -1.88 -16.68 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.10 2.31 6.48 -2.39 -0.02 2.29 16 32 H 0.41 11.78 7.63 -92.71 -0.71 11.07 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.02 0.83 8.05 -2.39 -0.02 0.81 16 35 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.08 4.15 5.85 -2.39 -0.01 4.13 16 38 H 0.40 7.53 9.12 -74.06 -0.68 6.86 16 Total: -1.00 -64.02 333.85 -1.10 -65.11 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.26 Total: 19.10 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 4.70 Total: 16.36 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -4.33 Total: -120.98 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.94 Total: -34.79 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 10.85 SS G_CDS: -1.30 Total: 9.55 kcal Total: -64.02 -1.10 -65.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083615276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.080 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds