Wall clock time and date at job start Fri Apr 10 2020 18:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 120.00267 * 2 1 4 4 C 1.53001 * 109.47296 * 265.66709 * 3 2 1 5 5 H 1.09002 * 112.95873 * 294.45440 * 4 3 2 6 6 C 1.53944 * 113.76912 * 66.12680 * 4 3 2 7 7 C 1.53948 * 86.28734 * 137.90728 * 6 4 3 8 8 N 1.47579 * 113.76843 * 162.77359 * 4 3 2 9 9 C 1.36934 * 134.49365 * 41.06881 * 8 4 3 10 10 H 1.07999 * 119.99949 * 342.80513 * 9 8 4 11 11 C 1.38817 * 119.99784 * 162.80330 * 9 8 4 12 12 N 1.31618 * 119.99498 * 165.28147 * 11 9 8 13 13 Si 1.86800 * 120.00100 * 345.28299 * 11 9 8 14 14 H 1.48503 * 109.47164 * 84.66341 * 13 11 9 15 15 H 1.48499 * 109.46806 * 204.66453 * 13 11 9 16 16 H 1.48504 * 109.46903 * 324.66293 * 13 11 9 17 17 C 1.34775 * 119.99512 * 179.97438 * 2 1 3 18 18 O 1.21643 * 119.99981 * 185.71036 * 17 2 1 19 19 C 1.47035 * 120.00402 * 5.43674 * 17 2 1 20 20 C 1.38540 * 126.90384 * 93.56045 * 19 17 2 21 21 Cl 1.73605 * 127.33783 * 0.02562 * 20 19 17 22 22 C 1.39806 * 105.32840 * 180.02562 * 20 19 17 23 23 N 1.30841 * 107.87107 * 0.02562 * 22 20 19 24 24 N 1.28435 * 110.98132 * 359.71401 * 23 22 20 25 25 C 1.46504 * 125.18626 * 180.30138 * 24 23 22 26 26 H 1.08998 * 109.47335 * 265.92861 * 1 2 3 27 27 H 1.08998 * 109.46801 * 25.92381 * 1 2 3 28 28 H 1.09002 * 109.47383 * 145.92336 * 1 2 3 29 29 H 1.09004 * 109.46921 * 25.66753 * 3 2 1 30 30 H 1.09001 * 109.46836 * 145.66290 * 3 2 1 31 31 H 1.08995 * 113.74854 * 252.25366 * 6 4 3 32 32 H 1.09007 * 113.74303 * 23.46182 * 6 4 3 33 33 H 1.09004 * 113.76553 * 90.69737 * 7 6 4 34 34 H 1.09001 * 113.77045 * 221.97493 * 7 6 4 35 35 H 0.96999 * 119.99494 * 179.97438 * 12 11 9 36 36 H 1.07994 * 126.06622 * 179.97438 * 22 20 19 37 37 H 1.09004 * 109.47054 * 274.85504 * 25 24 23 38 38 H 1.08996 * 109.47053 * 34.84810 * 25 24 23 39 39 H 1.08991 * 109.47376 * 154.85336 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5470 1.6559 -1.4384 5 1 3.2463 0.9635 -1.9072 6 6 1.3199 1.9825 -2.3085 7 6 2.1476 3.1586 -2.8579 8 7 2.9175 3.0753 -1.5989 9 6 3.6708 3.9586 -0.8727 10 1 3.9114 3.7432 0.1579 11 6 4.1252 5.1309 -1.4612 12 7 4.5913 6.1063 -0.7104 13 14 4.0751 5.3240 -3.3185 14 1 2.7295 5.7982 -3.7308 15 1 5.0994 6.3127 -3.7411 16 1 4.3566 4.0146 -3.9600 17 6 2.1389 -1.1672 0.0005 18 8 3.3508 -1.1699 0.1053 19 6 1.4086 -2.4378 -0.1196 20 6 1.1456 -3.1392 -1.2850 21 17 1.6068 -2.7059 -2.9015 22 6 0.4298 -4.2704 -0.8819 23 7 0.2940 -4.2175 0.4184 24 7 0.8565 -3.1667 0.8971 25 6 0.8974 -2.8030 2.3156 26 1 -0.3634 -0.0730 1.0250 27 1 -0.3633 0.9243 -0.4493 28 1 -0.3634 -0.8512 -0.5758 29 1 1.5771 2.0465 0.4452 30 1 3.1142 1.1589 0.5797 31 1 1.0940 1.2193 -3.0531 32 1 0.4447 2.2895 -1.7356 33 1 2.7304 2.9092 -3.7446 34 1 1.5791 4.0821 -2.9685 35 1 4.9092 6.9253 -1.1216 36 1 0.0546 -5.0493 -1.5290 37 1 -0.0139 -2.2664 2.5796 38 1 0.9749 -3.7065 2.9203 39 1 1.7615 -2.1655 2.5025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085596058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:09 Heat of formation + Delta-G solvation = 114.495028 kcal Electronic energy + Delta-G solvation = -24213.581200 eV Core-core repulsion = 20607.994783 eV Total energy + Delta-G solvation = -3605.586417 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.89113 -39.80426 -38.13534 -36.73342 -35.44040 -33.68525 -32.25524 -31.28387 -28.88870 -28.37623 -27.51831 -26.59551 -24.03706 -23.05075 -22.23684 -21.78506 -19.72068 -19.20863 -17.93624 -17.02805 -16.71175 -16.20826 -16.03064 -15.68495 -15.18869 -14.95771 -14.49980 -13.93895 -13.81760 -13.50810 -13.25480 -13.14200 -13.02405 -12.96651 -12.67442 -12.32287 -12.06553 -11.86318 -11.83893 -11.60467 -11.18920 -10.74156 -10.71770 -10.30674 -10.20036 -10.11000 -9.97920 -9.55008 -9.43698 -8.98019 -8.92031 -8.56175 -7.12429 -5.91210 -3.25449 1.22559 1.55403 2.15193 2.20008 2.55603 2.94141 3.34798 3.46300 3.47697 4.07658 4.19170 4.55227 4.66446 4.68088 4.71115 4.97166 4.99342 5.02502 5.08949 5.19779 5.21090 5.32489 5.51697 5.61444 5.74644 5.85882 5.87927 6.05666 6.20069 6.24493 6.31337 6.35520 6.46380 6.49756 6.99162 7.21424 7.25028 7.59615 7.93425 8.35465 8.69338 9.64843 10.30779 11.25704 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.022666 B = 0.003929 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.010093 B = 7124.406943 C = 7780.727168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.590 5.590 3 C 0.118 3.882 4 C 0.130 3.870 5 H 0.053 0.947 6 C -0.144 4.144 7 C 0.098 3.902 8 N -0.614 5.614 9 C -0.229 4.229 10 H 0.098 0.902 11 C 0.019 3.981 12 N -0.919 5.919 13 Si 0.883 3.117 14 H -0.285 1.285 15 H -0.299 1.299 16 H -0.273 1.273 17 C 0.584 3.416 18 O -0.508 6.508 19 C 0.002 3.998 20 C -0.120 4.120 21 Cl -0.016 7.016 22 C 0.024 3.976 23 N -0.275 5.275 24 N -0.267 5.267 25 C 0.086 3.914 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.263 0.737 36 H 0.195 0.805 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.705 -19.597 2.087 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.323 5.323 3 C -0.004 4.004 4 C 0.023 3.977 5 H 0.071 0.929 6 C -0.182 4.182 7 C -0.027 4.027 8 N -0.342 5.342 9 C -0.355 4.355 10 H 0.115 0.885 11 C -0.179 4.179 12 N -0.564 5.564 13 Si 0.713 3.287 14 H -0.212 1.212 15 H -0.227 1.227 16 H -0.198 1.198 17 C 0.367 3.633 18 O -0.381 6.381 19 C -0.129 4.129 20 C -0.158 4.158 21 Cl 0.012 6.988 22 C -0.154 4.154 23 N -0.105 5.105 24 N -0.055 5.055 25 C -0.054 4.054 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.212 0.788 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.233 -19.725 3.243 23.973 hybrid contribution 0.515 0.666 -2.006 2.175 sum -12.719 -19.059 1.238 22.947 Atomic orbital electron populations 1.21894 0.79272 1.04023 1.01564 1.47774 1.07176 1.05854 1.71522 1.21841 0.97442 0.82063 0.99072 1.22504 0.93740 0.88419 0.93038 0.92923 1.23591 0.97426 0.98103 0.99076 1.22767 0.92184 0.97098 0.90606 1.46603 1.58679 1.05160 1.23778 1.18729 1.25841 0.97124 0.93809 0.88462 1.24920 0.98831 0.96591 0.97546 1.69747 1.46610 1.05623 1.34409 0.86811 0.77005 0.77309 0.87561 1.21212 1.22654 1.19814 1.16930 0.86497 0.81876 0.78024 1.90907 1.12852 1.86499 1.47814 1.21335 1.05152 0.97630 0.88770 1.21244 1.08631 0.98704 0.87176 1.98377 1.91172 1.92595 1.16612 1.23505 1.02204 0.98894 0.90813 1.73232 1.17999 1.07220 1.12052 1.45488 1.37608 1.14820 1.07634 1.22292 1.04881 1.03551 0.74634 0.92688 0.89576 0.91435 0.89026 0.89717 0.92416 0.90258 0.93994 0.92444 0.92746 0.78845 0.89089 0.87910 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 9.98 59.85 0.60 1.33 16 2 N -0.59 -7.94 2.79 -182.99 -0.51 -8.45 16 3 C 0.12 1.97 5.30 -4.04 -0.02 1.95 16 4 C 0.13 2.52 4.54 -66.86 -0.30 2.22 16 5 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 6 C -0.14 -2.38 7.23 -25.79 -0.19 -2.57 16 7 C 0.10 2.06 5.83 -2.85 -0.02 2.04 16 8 N -0.61 -14.63 3.33 -169.71 -0.57 -15.19 16 9 C -0.23 -6.42 10.93 -15.06 -0.16 -6.58 16 10 H 0.10 2.87 8.06 -52.49 -0.42 2.45 16 11 C 0.02 0.55 5.50 -17.43 -0.10 0.46 16 12 N -0.92 -28.49 13.97 55.49 0.78 -27.71 16 13 Si 0.88 22.80 25.13 -169.99 -4.27 18.52 16 14 H -0.29 -7.10 6.84 56.52 0.39 -6.72 16 15 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 16 H -0.27 -6.94 6.21 56.52 0.35 -6.59 16 17 C 0.58 8.72 6.75 -12.70 -0.09 8.64 16 18 O -0.51 -9.66 16.73 5.24 0.09 -9.57 16 19 C 0.00 0.02 4.86 -82.00 -0.40 -0.38 16 20 C -0.12 -1.45 6.86 -38.88 -0.27 -1.71 16 21 Cl -0.02 -0.20 29.24 -51.86 -1.52 -1.71 16 22 C 0.02 0.24 12.04 -17.39 -0.21 0.03 16 23 N -0.27 -2.97 11.89 30.61 0.36 -2.60 16 24 N -0.27 -2.83 3.75 -63.85 -0.24 -3.07 16 25 C 0.09 0.59 11.21 59.85 0.67 1.26 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.79 6.52 -51.93 -0.34 0.45 16 28 H 0.07 0.64 6.92 -51.93 -0.36 0.28 16 29 H 0.09 1.47 8.04 -51.93 -0.42 1.06 16 30 H 0.08 1.59 7.48 -51.93 -0.39 1.20 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.17 6.90 -51.93 -0.36 0.81 16 33 H 0.04 0.90 6.70 -51.93 -0.35 0.56 16 34 H 0.06 1.22 7.10 -51.93 -0.37 0.85 16 35 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 36 H 0.19 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.71 7.66 -51.93 -0.40 0.31 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -34.81 340.46 -6.36 -41.17 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -5.14 Total: -3.20 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -0.48 Total: 6.69 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.18 Total: -57.03 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.27 Total: 18.52 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.81 -6.36 -41.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085596058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.668 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds