Wall clock time and date at job start Fri Apr 10 2020 18:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99775 * 2 1 4 4 C 1.53004 * 109.47019 * 264.43781 * 3 2 1 5 5 H 1.09001 * 112.96368 * 311.12037 * 4 3 2 6 6 C 1.53940 * 113.77036 * 179.43614 * 4 3 2 7 7 C 1.53942 * 86.29333 * 222.09325 * 6 4 3 8 8 N 1.47580 * 86.11711 * 23.60667 * 7 6 4 9 9 C 1.36939 * 134.49155 * 155.35618 * 8 7 6 10 10 H 1.08007 * 119.99790 * 181.63860 * 9 8 7 11 11 C 1.38807 * 120.00299 * 1.64390 * 9 8 7 12 12 N 1.31624 * 119.99964 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99979 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47362 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47025 * 120.00227 * 13 11 9 16 16 H 1.48500 * 109.47408 * 239.99896 * 13 11 9 17 17 C 1.34772 * 120.00064 * 179.97438 * 2 1 3 18 18 O 1.21652 * 119.99699 * 184.65355 * 17 2 1 19 19 C 1.47030 * 120.00423 * 4.65574 * 17 2 1 20 20 C 1.38541 * 126.90440 * 267.14767 * 19 17 2 21 21 Cl 1.73597 * 127.33651 * 0.03790 * 20 19 17 22 22 C 1.39806 * 105.32360 * 179.77376 * 20 19 17 23 23 N 1.30841 * 107.87729 * 0.22304 * 22 20 19 24 24 N 1.28432 * 110.98020 * 0.02562 * 23 22 20 25 25 C 1.46504 * 125.18308 * 179.97438 * 24 23 22 26 26 H 1.09003 * 109.47197 * 236.59655 * 1 2 3 27 27 H 1.08999 * 109.47357 * 356.60250 * 1 2 3 28 28 H 1.09009 * 109.46622 * 116.60019 * 1 2 3 29 29 H 1.09001 * 109.47014 * 24.43389 * 3 2 1 30 30 H 1.08994 * 109.47255 * 144.43684 * 3 2 1 31 31 H 1.09002 * 113.74001 * 336.43957 * 6 4 3 32 32 H 1.09001 * 113.74260 * 107.64026 * 6 4 3 33 33 H 1.08998 * 113.76946 * 137.90742 * 7 6 4 34 34 H 1.09000 * 113.76965 * 269.19467 * 7 6 4 35 35 H 0.96996 * 119.99814 * 179.97438 * 12 11 9 36 36 H 1.08002 * 126.06294 * 180.20404 * 22 20 19 37 37 H 1.08995 * 109.47211 * 85.24342 * 25 24 23 38 38 H 1.09004 * 109.46937 * 205.23744 * 25 24 23 39 39 H 1.08994 * 109.47256 * 325.23765 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5735 1.6405 -1.4357 5 1 3.0371 0.8181 -1.9805 6 6 3.3387 2.9712 -1.5520 7 6 2.4538 3.2578 -2.7786 8 7 1.4908 2.3139 -2.1789 9 6 0.1364 2.1349 -2.2739 10 1 -0.3481 1.3628 -1.6945 11 6 -0.6136 2.9455 -3.1147 12 7 -0.0232 3.8867 -3.8204 13 14 -2.4609 2.7007 -3.2447 14 1 -2.8764 1.5863 -2.3556 15 1 -3.1555 3.9471 -2.8329 16 1 -2.8196 2.3748 -4.6484 17 6 2.1389 -1.1671 0.0005 18 8 3.3524 -1.1688 0.0860 19 6 1.4075 -2.4385 -0.1023 20 6 0.9635 -3.2298 0.9447 21 17 1.1519 -2.9303 2.6442 22 6 0.3262 -4.3179 0.3409 23 7 0.4055 -4.1609 -0.9557 24 7 1.0316 -3.0790 -1.2505 25 6 1.2975 -2.6012 -2.6096 26 1 -0.3634 -0.5658 0.8579 27 1 -0.3634 1.0258 0.0609 28 1 -0.3633 -0.4602 -0.9190 29 1 1.5688 2.0512 0.4251 30 1 3.1031 1.1655 0.5976 31 1 3.1659 3.6511 -0.7177 32 1 4.3956 2.8504 -1.7898 33 1 2.0903 4.2842 -2.8279 34 1 2.8821 2.9127 -3.7196 35 1 -0.5472 4.4529 -4.4083 36 1 -0.1474 -5.1420 0.8537 37 1 0.4381 -2.0364 -2.9708 38 1 2.1779 -1.9585 -2.6031 39 1 1.4744 -3.4530 -3.2662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085596059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:13 Heat of formation + Delta-G solvation = 109.660471 kcal Electronic energy + Delta-G solvation = -24710.081693 eV Core-core repulsion = 21104.285634 eV Total energy + Delta-G solvation = -3605.796059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.68241 -39.59167 -37.81336 -36.65511 -35.17107 -33.43689 -32.33603 -31.07388 -28.65557 -27.81459 -27.23200 -26.33516 -23.60066 -23.38988 -21.95134 -21.52315 -19.39516 -19.13006 -17.69012 -16.88571 -16.72371 -15.99671 -15.81505 -15.35206 -15.02411 -14.46503 -14.32755 -14.00971 -13.73120 -13.27919 -13.12751 -12.98542 -12.81603 -12.69736 -12.23682 -11.93810 -11.72858 -11.53582 -11.45125 -11.20246 -11.07457 -10.79892 -10.60479 -10.57758 -10.22437 -9.88700 -9.73870 -9.43264 -9.34606 -8.86824 -8.82506 -8.39914 -6.93174 -5.83775 -3.15352 1.43383 1.71104 2.28920 2.37043 2.82357 3.16233 3.29592 3.32814 3.38292 4.32008 4.35262 4.43104 4.90785 5.05348 5.06306 5.20170 5.27967 5.32228 5.38403 5.44834 5.60779 5.62740 5.78640 5.87722 5.97943 6.03260 6.06804 6.17572 6.38641 6.45700 6.52858 6.63329 6.81963 7.20255 7.34891 7.47308 7.53991 7.80686 7.92131 8.11141 8.96833 9.64754 10.56425 11.33451 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.014944 B = 0.005009 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.265566 B = 5589.117811 C = 6307.582916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.582 5.582 3 C 0.117 3.883 4 C 0.128 3.872 5 H 0.044 0.956 6 C -0.158 4.158 7 C 0.161 3.839 8 N -0.602 5.602 9 C -0.229 4.229 10 H 0.088 0.912 11 C -0.007 4.007 12 N -0.917 5.917 13 Si 0.901 3.099 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.586 3.414 18 O -0.522 6.522 19 C 0.006 3.994 20 C -0.124 4.124 21 Cl -0.025 7.025 22 C 0.022 3.978 23 N -0.274 5.274 24 N -0.260 5.260 25 C 0.086 3.914 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.252 0.748 36 H 0.193 0.807 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 -11.206 7.994 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.312 5.312 3 C -0.006 4.006 4 C 0.020 3.980 5 H 0.061 0.939 6 C -0.197 4.197 7 C 0.036 3.964 8 N -0.328 5.328 9 C -0.357 4.357 10 H 0.106 0.894 11 C -0.204 4.204 12 N -0.564 5.564 13 Si 0.731 3.269 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.369 3.631 18 O -0.397 6.397 19 C -0.125 4.125 20 C -0.162 4.162 21 Cl 0.004 6.996 22 C -0.156 4.156 23 N -0.105 5.105 24 N -0.048 5.048 25 C -0.054 4.054 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.210 0.790 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.989 -11.510 6.869 13.550 hybrid contribution -1.004 0.172 0.502 1.136 sum 0.984 -11.338 7.371 13.559 Atomic orbital electron populations 1.22026 0.78742 1.04702 1.00838 1.47716 1.07588 1.05519 1.70405 1.22117 0.96691 0.82948 0.98849 1.22593 0.89677 0.94486 0.91252 0.93890 1.23779 0.97472 0.97287 1.01201 1.22143 0.86237 0.96434 0.91625 1.46150 1.00909 1.34448 1.51311 1.19317 0.80565 1.14673 1.21124 0.89446 1.24780 0.97643 0.98778 0.99162 1.69833 1.33994 1.22118 1.30427 0.86233 0.85663 0.77465 0.77504 1.20507 1.21667 1.21813 1.16849 0.86329 0.81906 0.77997 1.90838 1.12715 1.86700 1.49462 1.21310 1.06073 0.98041 0.87113 1.21160 1.09865 0.98992 0.86196 1.98341 1.96690 1.95707 1.08881 1.23459 1.03601 0.99786 0.88789 1.73236 1.15036 1.04919 1.17314 1.45519 1.37975 1.14605 1.06693 1.22352 1.04437 1.01684 0.76936 0.92688 0.88245 0.92373 0.89231 0.90259 0.90616 0.92897 0.91055 0.95769 0.93738 0.78982 0.88513 0.88367 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 7.97 59.85 0.48 1.70 16 2 N -0.58 -9.59 2.89 -182.99 -0.53 -10.12 16 3 C 0.12 1.98 5.26 -4.04 -0.02 1.96 16 4 C 0.13 2.46 4.50 -66.86 -0.30 2.16 16 5 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 6 C -0.16 -2.85 7.86 -25.81 -0.20 -3.06 16 7 C 0.16 3.60 7.47 -2.98 -0.02 3.58 16 8 N -0.60 -13.93 3.57 -170.76 -0.61 -14.54 16 9 C -0.23 -5.69 10.27 -15.06 -0.15 -5.85 16 10 H 0.09 2.00 3.82 -52.48 -0.20 1.80 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 12 N -0.92 -25.86 11.42 55.49 0.63 -25.22 16 13 Si 0.90 20.76 29.55 -169.99 -5.02 15.73 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.59 9.99 6.74 -12.70 -0.09 9.91 16 18 O -0.52 -10.22 16.75 5.23 0.09 -10.14 16 19 C 0.01 0.09 5.40 -82.00 -0.44 -0.35 16 20 C -0.12 -1.73 6.89 -38.88 -0.27 -2.00 16 21 Cl -0.02 -0.31 29.24 -51.86 -1.52 -1.83 16 22 C 0.02 0.27 12.04 -17.39 -0.21 0.06 16 23 N -0.27 -3.80 11.89 30.61 0.36 -3.43 16 24 N -0.26 -3.71 3.75 -63.85 -0.24 -3.95 16 25 C 0.09 1.03 11.21 59.85 0.67 1.70 16 26 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 27 H 0.10 1.60 6.44 -51.93 -0.33 1.27 16 28 H 0.06 0.93 7.58 -51.92 -0.39 0.54 16 29 H 0.09 1.51 7.78 -51.93 -0.40 1.11 16 30 H 0.08 1.29 7.53 -51.93 -0.39 0.90 16 31 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.76 7.23 -51.93 -0.38 1.39 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.10 1.25 7.67 -51.93 -0.40 0.85 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -30.83 342.79 -7.33 -38.16 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.01 Total: 0.66 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -0.66 Total: 9.53 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.38 Total: -57.28 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.52 Total: -1.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.83 -7.33 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085596059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.818 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds