Wall clock time and date at job start Fri Apr 10 2020 18:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 120.00170 * 2 1 4 4 C 1.53002 * 109.46877 * 95.88852 * 3 2 1 5 5 H 1.09000 * 112.96495 * 50.32739 * 4 3 2 6 6 C 1.53941 * 113.76383 * 182.00821 * 4 3 2 7 7 C 1.53947 * 86.29000 * 137.90583 * 6 4 3 8 8 N 1.47584 * 113.76455 * 278.64895 * 4 3 2 9 9 C 1.36933 * 134.49562 * 41.07227 * 8 4 3 10 10 H 1.07998 * 119.99820 * 353.73316 * 9 8 4 11 11 C 1.38812 * 120.00161 * 173.72909 * 9 8 4 12 12 N 1.31616 * 120.00029 * 169.51318 * 11 9 8 13 13 Si 1.86800 * 119.99938 * 349.51338 * 11 9 8 14 14 H 1.48496 * 109.47182 * 84.53966 * 13 11 9 15 15 H 1.48499 * 109.47167 * 204.54269 * 13 11 9 16 16 H 1.48500 * 109.47123 * 324.54064 * 13 11 9 17 17 C 1.34784 * 119.99786 * 180.02562 * 2 1 3 18 18 O 1.21696 * 119.99714 * 185.08883 * 17 2 1 19 19 C 1.46661 * 120.00156 * 5.07909 * 17 2 1 20 20 C 1.36679 * 126.84192 * 354.62036 * 19 17 2 21 21 N 1.33298 * 107.82810 * 179.97438 * 20 19 17 22 22 C 1.31022 * 109.70559 * 359.97438 * 21 20 19 23 23 Cl 1.73604 * 125.43194 * 179.97438 * 22 21 20 24 24 N 1.34598 * 109.13063 * 359.74960 * 22 21 20 25 25 C 1.46496 * 126.49087 * 180.28687 * 24 22 21 26 26 H 1.08999 * 109.47310 * 238.06058 * 1 2 3 27 27 H 1.09005 * 109.47408 * 118.06312 * 1 2 3 28 28 H 1.09005 * 109.46966 * 358.06306 * 1 2 3 29 29 H 1.09006 * 109.46888 * 215.88643 * 3 2 1 30 30 H 1.08999 * 109.47061 * 335.88742 * 3 2 1 31 31 H 1.09004 * 113.74072 * 252.24503 * 6 4 3 32 32 H 1.09000 * 113.74538 * 23.45697 * 6 4 3 33 33 H 1.09003 * 113.76825 * 90.68637 * 7 6 4 34 34 H 1.08994 * 113.77491 * 221.97977 * 7 6 4 35 35 H 0.96999 * 120.00117 * 180.02562 * 12 11 9 36 36 H 1.07996 * 126.07932 * 359.93625 * 20 19 17 37 37 H 1.08994 * 109.47112 * 274.71559 * 25 24 22 38 38 H 1.08995 * 109.47264 * 34.71964 * 25 24 22 39 39 H 1.09005 * 109.47033 * 154.72169 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5806 1.6363 1.4349 5 1 3.0695 0.8202 1.9669 6 6 3.3156 2.9837 1.5550 7 6 2.4378 3.2383 2.7938 8 7 1.4895 2.2741 2.1970 9 6 0.1416 2.0588 2.3059 10 1 -0.3420 1.3313 1.6709 11 6 -0.6032 2.7754 3.2325 12 7 -1.9180 2.7247 3.2008 13 14 0.2607 3.8117 4.5245 14 1 0.5864 5.1436 3.9541 15 1 -0.6305 3.9812 5.7002 16 1 1.5130 3.1343 4.9463 17 6 2.1388 -1.1673 -0.0005 18 8 3.3522 -1.1694 0.0930 19 6 1.4098 -2.4349 -0.1135 20 6 0.0533 -2.6022 -0.1225 21 7 -0.1963 -3.9061 -0.2417 22 6 0.9327 -4.5677 -0.3087 23 17 1.0820 -6.2900 -0.4680 24 7 1.9581 -3.6986 -0.2393 25 6 3.3846 -4.0288 -0.2851 26 1 -0.3634 -0.5436 0.8721 27 1 -0.3634 -0.4835 -0.9069 28 1 -0.3633 1.0271 0.0347 29 1 3.1002 1.1670 -0.6024 30 1 1.5669 2.0524 -0.4198 31 1 4.3772 2.8858 1.7821 32 1 3.1190 3.6661 0.7280 33 1 2.8837 2.8931 3.7266 34 1 2.0523 4.2558 2.8576 35 1 -2.4384 3.2258 3.8480 36 1 -0.6848 -1.8175 -0.0460 37 1 3.7301 -4.2869 0.7159 38 1 3.5402 -4.8760 -0.9529 39 1 3.9450 -3.1689 -0.6524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085722903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:43 Heat of formation + Delta-G solvation = 116.967753 kcal Electronic energy + Delta-G solvation = -24318.091981 eV Core-core repulsion = 20712.612790 eV Total energy + Delta-G solvation = -3605.479192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.40754 -39.56194 -38.06787 -37.21574 -35.57644 -34.09935 -32.33376 -30.71462 -28.76971 -27.89304 -27.35840 -26.59401 -23.79064 -23.12602 -22.09536 -21.49744 -19.62429 -19.13957 -17.44888 -17.00020 -16.72077 -16.36967 -16.11009 -15.32380 -15.18066 -14.78519 -14.19356 -14.14757 -13.66667 -13.54239 -13.37050 -13.01767 -12.89387 -12.70934 -12.14634 -12.02048 -11.91845 -11.87071 -11.58394 -11.37554 -11.17281 -10.69207 -10.51713 -10.35754 -10.15558 -9.98504 -9.83595 -9.65954 -9.19667 -8.97603 -8.67607 -8.35527 -7.15696 -5.89278 -3.21299 1.00712 1.12400 2.48389 2.58405 3.25586 3.33609 3.34633 3.43549 3.46366 4.41183 4.54644 4.55852 4.61585 4.78592 4.97756 5.19001 5.26047 5.29839 5.33549 5.48522 5.61790 5.66881 5.77053 5.83119 5.89187 5.98680 6.14492 6.21006 6.26978 6.31738 6.37040 6.40923 6.52879 6.72419 7.04428 7.13515 7.51690 7.55383 8.22205 8.33967 8.66659 9.65499 10.30708 11.26820 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.003840 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.302024 B = 7290.179099 C = 8072.869487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.580 5.580 3 C 0.124 3.876 4 C 0.133 3.867 5 H 0.055 0.945 6 C -0.144 4.144 7 C 0.096 3.904 8 N -0.621 5.621 9 C -0.237 4.237 10 H 0.116 0.884 11 C 0.013 3.987 12 N -0.925 5.925 13 Si 0.884 3.116 14 H -0.289 1.289 15 H -0.304 1.304 16 H -0.270 1.270 17 C 0.591 3.409 18 O -0.552 6.552 19 C -0.060 4.060 20 C 0.030 3.970 21 N -0.469 5.469 22 C 0.254 3.746 23 Cl 0.035 6.965 24 N -0.415 5.415 25 C 0.063 3.937 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.262 0.738 36 H 0.212 0.788 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.408 -11.427 -9.858 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.310 5.310 3 C 0.001 3.999 4 C 0.026 3.974 5 H 0.072 0.928 6 C -0.183 4.183 7 C -0.029 4.029 8 N -0.349 5.349 9 C -0.363 4.363 10 H 0.133 0.867 11 C -0.184 4.184 12 N -0.571 5.571 13 Si 0.716 3.284 14 H -0.217 1.217 15 H -0.232 1.232 16 H -0.195 1.195 17 C 0.378 3.622 18 O -0.432 6.432 19 C -0.177 4.177 20 C -0.123 4.123 21 N -0.190 5.190 22 C -0.032 4.032 23 Cl 0.063 6.937 24 N -0.100 5.100 25 C -0.079 4.079 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.228 0.772 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.077 -11.956 -9.763 17.907 hybrid contribution 1.067 0.552 1.180 1.684 sum 10.144 -11.404 -8.583 17.510 Atomic orbital electron populations 1.22692 0.78715 1.06118 1.00791 1.47360 1.07623 1.05091 1.70905 1.21976 0.96529 0.83269 0.98109 1.22550 0.88582 0.94424 0.91883 0.92765 1.23595 0.97655 0.97684 0.99320 1.22814 0.90190 0.94933 0.94964 1.46756 1.02195 1.34548 1.51377 1.19191 0.78736 1.21066 1.17280 0.86666 1.24687 0.95134 0.99598 0.98964 1.69688 1.03700 1.45332 1.38386 0.86910 0.78801 0.80455 0.82230 1.21663 1.23180 1.19515 1.16597 0.86159 0.82058 0.77350 1.90754 1.13322 1.87160 1.51951 1.20847 0.94158 0.85747 1.16913 1.24047 0.93671 0.93328 1.01278 1.70144 1.23983 1.05129 1.19772 1.23230 0.84392 0.86849 1.08744 1.98415 1.97455 1.01516 1.96337 1.44989 1.08108 1.05141 1.51721 1.22381 0.76809 1.04356 1.04316 0.90508 0.91993 0.87450 0.90390 0.89062 0.92156 0.89972 0.93841 0.92722 0.92846 0.77192 0.89681 0.89530 0.86934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 6.79 59.84 0.41 1.28 16 2 N -0.58 -9.27 2.89 -183.12 -0.53 -9.80 16 3 C 0.12 1.98 5.16 -4.04 -0.02 1.96 16 4 C 0.13 2.47 4.49 -66.86 -0.30 2.17 16 5 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 6 C -0.14 -2.35 7.86 -25.79 -0.20 -2.56 16 7 C 0.10 1.97 5.74 -2.84 -0.02 1.95 16 8 N -0.62 -14.00 3.48 -169.71 -0.59 -14.59 16 9 C -0.24 -6.12 10.70 -15.06 -0.16 -6.28 16 10 H 0.12 2.89 3.85 -52.49 -0.20 2.69 16 11 C 0.01 0.36 5.50 -17.43 -0.10 0.27 16 12 N -0.92 -27.38 13.97 55.49 0.78 -26.61 16 13 Si 0.88 22.23 24.94 -169.99 -4.24 17.99 16 14 H -0.29 -7.14 6.79 56.52 0.38 -6.75 16 15 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 16 H -0.27 -6.58 5.54 56.52 0.31 -6.27 16 17 C 0.59 9.71 7.59 -12.86 -0.10 9.61 16 18 O -0.55 -9.84 14.59 5.19 0.08 -9.76 16 19 C -0.06 -0.91 6.85 -82.10 -0.56 -1.48 16 20 C 0.03 0.44 9.85 -17.48 -0.17 0.27 16 21 N -0.47 -7.21 11.21 -11.49 -0.13 -7.34 16 22 C 0.25 3.47 8.48 -90.34 -0.77 2.70 16 23 Cl 0.04 0.37 28.84 -51.86 -1.50 -1.13 16 24 N -0.42 -5.61 3.18 -118.36 -0.38 -5.98 16 25 C 0.06 0.64 10.53 59.84 0.63 1.27 16 26 H 0.08 1.22 6.23 -51.93 -0.32 0.90 16 27 H 0.06 0.74 6.49 -51.93 -0.34 0.40 16 28 H 0.11 1.78 6.06 -51.93 -0.31 1.47 16 29 H 0.08 1.14 7.68 -51.93 -0.40 0.74 16 30 H 0.09 1.43 7.81 -51.93 -0.41 1.02 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.23 8.10 -51.93 -0.42 0.80 16 33 H 0.04 0.92 6.90 -51.93 -0.36 0.56 16 34 H 0.05 1.16 5.83 -51.93 -0.30 0.86 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 36 H 0.21 2.77 4.08 -52.49 -0.21 2.55 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.64 7.94 -51.93 -0.41 0.23 16 39 H 0.11 1.26 6.38 -51.93 -0.33 0.93 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -32.31 322.15 -7.54 -39.85 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.53 Total: 1.35 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -1.36 Total: 11.17 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: -0.85 Total: -64.32 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.24 Total: 17.99 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.50 Total: -1.13 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.31 -7.54 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085722903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.818 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds