Wall clock time and date at job start Fri Apr 10 2020 18:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34236 * 126.28136 * 2 1 4 4 H 0.96996 * 125.73645 * 0.03759 * 3 2 1 5 5 N 1.39933 * 108.52078 * 179.97438 * 3 2 1 6 6 C 1.30530 * 108.89955 * 359.75536 * 5 3 2 7 7 Cl 1.73594 * 126.00743 * 180.26486 * 6 5 3 8 8 C 1.38072 * 126.27920 * 179.97438 * 2 1 3 9 9 C 1.47378 * 126.42356 * 359.96404 * 8 2 1 10 10 O 1.21608 * 120.00284 * 90.00568 * 9 8 2 11 11 N 1.34773 * 120.00086 * 269.99677 * 9 8 2 12 12 C 1.46505 * 120.00334 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47455 * 180.02562 * 12 11 9 14 14 H 1.09003 * 112.84720 * 43.80501 * 13 12 11 15 15 C 1.53785 * 113.61657 * 175.00215 * 13 12 11 16 16 C 1.53782 * 87.07880 * 140.06687 * 15 13 12 17 17 H 1.08995 * 113.61479 * 89.20448 * 16 15 13 18 18 N 1.46499 * 113.60846 * 220.01787 * 16 15 13 19 19 C 1.36935 * 119.99926 * 205.00306 * 18 16 15 20 20 H 1.08005 * 119.99877 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00369 * 179.73019 * 19 18 16 22 22 N 1.31617 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47050 * 59.99408 * 23 21 19 25 25 H 1.48496 * 109.47289 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.46855 * 299.99389 * 23 21 19 27 27 C 1.53776 * 87.08225 * 334.56750 * 16 15 13 28 28 H 1.09002 * 109.47451 * 269.99822 * 1 2 3 29 29 H 1.09000 * 109.47212 * 29.99836 * 1 2 3 30 30 H 1.09000 * 109.47178 * 149.99995 * 1 2 3 31 31 H 0.97005 * 120.00212 * 0.02562 * 11 9 8 32 32 H 1.08999 * 109.46578 * 60.00502 * 12 11 9 33 33 H 1.08996 * 109.47119 * 300.00935 * 12 11 9 34 34 H 1.08996 * 113.60830 * 25.51428 * 15 13 12 35 35 H 1.08999 * 113.68628 * 254.62663 * 15 13 12 36 36 H 0.97005 * 120.00261 * 25.00430 * 18 16 15 37 37 H 0.97004 * 120.00382 * 180.02562 * 22 21 19 38 38 H 1.09007 * 113.61232 * 139.98431 * 27 16 15 39 39 H 1.08996 * 113.61619 * 270.88535 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0018 2.0047 0.0005 5 7 3.6339 0.6552 0.0006 6 6 3.6599 -0.6498 0.0062 7 17 5.0841 -1.6422 0.0157 8 6 2.3239 -1.1131 0.0005 9 6 1.8857 -2.5202 0.0019 10 8 1.7045 -3.1017 -1.0507 11 7 1.6860 -3.1627 1.1697 12 6 1.2499 -4.5613 1.1711 13 6 1.0985 -5.0469 2.6140 14 1 0.5964 -4.3215 3.2542 15 6 0.5263 -6.4697 2.7284 16 6 1.5334 -6.6985 3.8678 17 1 1.1496 -6.4261 4.8509 18 7 2.1518 -8.0264 3.8464 19 6 2.6421 -8.5720 5.0027 20 1 2.5732 -8.0232 5.9304 21 6 3.2231 -9.8325 4.9836 22 7 3.3023 -10.5035 3.8541 23 14 3.8913 -10.5771 6.5611 24 1 2.7933 -10.7032 7.5529 25 1 4.4553 -11.9206 6.2743 26 1 4.9562 -9.6997 7.1103 27 6 2.3979 -5.6057 3.2174 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.8303 -2.6988 2.0093 32 1 1.9910 -5.1734 0.6572 33 1 0.2918 -4.6436 0.6579 34 1 0.7131 -7.0873 1.8499 35 1 -0.5140 -6.4986 3.0527 36 1 2.2141 -8.5191 3.0132 37 1 3.7079 -11.3846 3.8407 38 1 2.8688 -4.9356 3.9369 39 1 3.0964 -5.9871 2.4727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086104826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:05 Heat of formation + Delta-G solvation = 56.147590 kcal Electronic energy + Delta-G solvation = -22705.029028 eV Core-core repulsion = 19096.912476 eV Total energy + Delta-G solvation = -3608.116552 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.91716 -39.48710 -38.31425 -37.10630 -34.62733 -33.28285 -33.13408 -31.73923 -30.22009 -28.28926 -27.00529 -25.06508 -23.97731 -22.70086 -22.34436 -21.01992 -20.09686 -19.04559 -18.21220 -17.04793 -16.71717 -16.30785 -15.60922 -15.52037 -15.18720 -14.86303 -14.63741 -13.94428 -13.87829 -13.62967 -13.50764 -13.12427 -12.90122 -12.81239 -12.28451 -12.04445 -11.88611 -11.79015 -11.38111 -11.22084 -11.09401 -10.81396 -10.53919 -10.30235 -10.16275 -9.92647 -9.84884 -9.80915 -9.47993 -9.17118 -9.01429 -8.84745 -6.94737 -5.76690 -3.05495 1.09404 1.13061 1.79682 2.42262 2.49672 3.26722 3.44228 3.48653 3.49826 4.03880 4.35580 4.57628 4.59644 4.80330 4.88871 4.99164 5.04691 5.22424 5.25954 5.27853 5.48012 5.50599 5.53644 5.83681 5.88035 5.95636 6.11016 6.27337 6.32986 6.38622 6.46914 6.51526 6.62455 6.84299 6.84855 7.13585 7.46653 7.69807 8.16302 8.41962 9.52852 10.11454 10.45538 11.45652 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.002610 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.157734 B =10723.895303 C =11389.418873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.143 3.857 3 N -0.448 5.448 4 H 0.448 0.552 5 N -0.276 5.276 6 C 0.160 3.840 7 Cl 0.027 6.973 8 C -0.269 4.269 9 C 0.594 3.406 10 O -0.530 6.530 11 N -0.713 5.713 12 C 0.131 3.869 13 C -0.127 4.127 14 H 0.088 0.912 15 C -0.142 4.142 16 C 0.165 3.835 17 H 0.075 0.925 18 N -0.713 5.713 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.161 4.161 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.401 0.599 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.053 0.947 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 25.894 -7.347 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.011 3.989 3 N -0.157 5.157 4 H 0.294 0.706 5 N -0.102 5.102 6 C -0.033 4.033 7 Cl 0.054 6.946 8 C -0.285 4.285 9 C 0.377 3.623 10 O -0.406 6.406 11 N -0.363 5.363 12 C 0.008 3.992 13 C -0.146 4.146 14 H 0.106 0.894 15 C -0.182 4.182 16 C 0.053 3.947 17 H 0.093 0.907 18 N -0.351 5.351 19 C -0.376 4.376 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.202 4.202 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.235 0.765 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.869 26.272 -7.927 28.063 hybrid contribution 0.202 -0.575 0.936 1.118 sum -5.667 25.697 -6.990 27.227 Atomic orbital electron populations 1.20649 0.85589 1.05196 1.04535 1.21426 0.94854 0.85965 0.96682 1.45852 1.03071 1.08654 1.58173 0.70564 1.77181 0.96433 1.10773 1.25794 1.22631 0.89067 0.90505 1.01089 1.98451 1.34966 1.64507 1.96636 1.19843 0.91157 0.94621 1.22860 1.17097 0.76984 0.84204 0.84019 1.90812 1.50761 1.67563 1.31432 1.46041 1.68409 1.13774 1.08097 1.21492 1.00009 0.80292 0.97364 1.22635 1.00369 0.97260 0.94331 0.89401 1.23448 0.99449 0.94124 1.01164 1.21520 0.91551 0.86325 0.95271 0.90727 1.42408 1.68732 1.14829 1.09098 1.19253 1.31260 0.98858 0.88202 0.91181 1.24766 1.01818 0.97332 0.96985 1.69649 1.50002 1.13689 1.24688 0.86272 0.78781 0.78350 0.82797 1.21261 1.21690 1.21245 1.23950 0.95923 0.99902 1.00415 0.88831 0.89900 0.88641 0.76482 0.90987 0.91564 0.90078 0.92028 0.78048 0.93394 0.92780 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.42 10.25 36.00 0.37 -0.06 16 2 C 0.14 1.10 7.29 -81.61 -0.60 0.50 16 3 N -0.45 -3.12 7.28 33.86 0.25 -2.88 16 4 H 0.45 1.34 8.96 -182.73 -1.64 -0.30 16 5 N -0.28 -2.97 12.64 33.18 0.42 -2.55 16 6 C 0.16 1.90 7.89 -16.90 -0.13 1.76 16 7 Cl 0.03 0.32 29.19 -51.86 -1.51 -1.19 16 8 C -0.27 -3.00 5.88 -105.04 -0.62 -3.61 16 9 C 0.59 7.71 7.17 -12.54 -0.09 7.62 16 10 O -0.53 -8.93 17.11 5.27 0.09 -8.84 16 11 N -0.71 -8.01 5.55 -61.40 -0.34 -8.36 16 12 C 0.13 1.66 5.51 -4.04 -0.02 1.64 16 13 C -0.13 -1.62 3.75 -89.81 -0.34 -1.96 16 14 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.14 -2.19 7.39 -25.92 -0.19 -2.38 16 16 C 0.17 3.15 4.48 -67.12 -0.30 2.85 16 17 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 18 N -0.71 -17.71 5.40 -52.64 -0.28 -17.99 16 19 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 23 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 C -0.16 -2.62 7.43 -25.92 -0.19 -2.81 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.53 7.96 -51.93 -0.41 0.12 16 31 H 0.40 3.70 8.46 -40.82 -0.35 3.35 16 32 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.39 10.21 7.92 -40.82 -0.32 9.89 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -34.54 353.85 -9.17 -43.71 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.46 Total: 6.77 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.36 Total: -3.82 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.77 Total: -59.26 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.51 Total: -1.19 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.54 -9.17 -43.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086104826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.854 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds