Wall clock time and date at job start Fri Apr 10 2020 18:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34236 * 126.28136 * 2 1 4 4 H 0.96996 * 125.73645 * 0.03759 * 3 2 1 5 5 N 1.39933 * 108.52078 * 179.97438 * 3 2 1 6 6 C 1.30530 * 108.89955 * 359.75536 * 5 3 2 7 7 Cl 1.73594 * 126.00743 * 180.26486 * 6 5 3 8 8 C 1.38072 * 126.27920 * 179.97438 * 2 1 3 9 9 C 1.47378 * 126.42356 * 359.96404 * 8 2 1 10 10 O 1.21608 * 120.00284 * 90.00568 * 9 8 2 11 11 N 1.34773 * 120.00086 * 269.99677 * 9 8 2 12 12 C 1.46505 * 120.00334 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47455 * 180.02562 * 12 11 9 14 14 H 1.09003 * 112.84720 * 43.80501 * 13 12 11 15 15 C 1.53785 * 113.61657 * 175.00215 * 13 12 11 16 16 C 1.53782 * 87.07880 * 140.06687 * 15 13 12 17 17 H 1.08995 * 113.61479 * 89.20448 * 16 15 13 18 18 N 1.46499 * 113.60846 * 220.01787 * 16 15 13 19 19 C 1.36935 * 119.99926 * 205.00306 * 18 16 15 20 20 H 1.08005 * 119.99877 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00369 * 179.73019 * 19 18 16 22 22 N 1.31617 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47050 * 59.99408 * 23 21 19 25 25 H 1.48496 * 109.47289 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.46855 * 299.99389 * 23 21 19 27 27 C 1.53776 * 87.08225 * 334.56750 * 16 15 13 28 28 H 1.09002 * 109.47451 * 269.99822 * 1 2 3 29 29 H 1.09000 * 109.47212 * 29.99836 * 1 2 3 30 30 H 1.09000 * 109.47178 * 149.99995 * 1 2 3 31 31 H 0.97005 * 120.00212 * 0.02562 * 11 9 8 32 32 H 1.08999 * 109.46578 * 60.00502 * 12 11 9 33 33 H 1.08996 * 109.47119 * 300.00935 * 12 11 9 34 34 H 1.08996 * 113.60830 * 25.51428 * 15 13 12 35 35 H 1.08999 * 113.68628 * 254.62663 * 15 13 12 36 36 H 0.97005 * 120.00261 * 25.00430 * 18 16 15 37 37 H 0.97004 * 120.00382 * 180.02562 * 22 21 19 38 38 H 1.09007 * 113.61232 * 139.98431 * 27 16 15 39 39 H 1.08996 * 113.61619 * 270.88535 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0018 2.0047 0.0005 5 7 3.6339 0.6552 0.0006 6 6 3.6599 -0.6498 0.0062 7 17 5.0841 -1.6422 0.0157 8 6 2.3239 -1.1131 0.0005 9 6 1.8857 -2.5202 0.0019 10 8 1.7045 -3.1017 -1.0507 11 7 1.6860 -3.1627 1.1697 12 6 1.2499 -4.5613 1.1711 13 6 1.0985 -5.0469 2.6140 14 1 0.5964 -4.3215 3.2542 15 6 0.5263 -6.4697 2.7284 16 6 1.5334 -6.6985 3.8678 17 1 1.1496 -6.4261 4.8509 18 7 2.1518 -8.0264 3.8464 19 6 2.6421 -8.5720 5.0027 20 1 2.5732 -8.0232 5.9304 21 6 3.2231 -9.8325 4.9836 22 7 3.3023 -10.5035 3.8541 23 14 3.8913 -10.5771 6.5611 24 1 2.7933 -10.7032 7.5529 25 1 4.4553 -11.9206 6.2743 26 1 4.9562 -9.6997 7.1103 27 6 2.3979 -5.6057 3.2174 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.8303 -2.6988 2.0093 32 1 1.9910 -5.1734 0.6572 33 1 0.2918 -4.6436 0.6579 34 1 0.7131 -7.0873 1.8499 35 1 -0.5140 -6.4986 3.0527 36 1 2.2141 -8.5191 3.0132 37 1 3.7079 -11.3846 3.8407 38 1 2.8688 -4.9356 3.9369 39 1 3.0964 -5.9871 2.4727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086104826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:05 Heat of formation + Delta-G solvation = 30.331860 kcal Electronic energy + Delta-G solvation = -22706.148482 eV Core-core repulsion = 19096.912476 eV Total energy + Delta-G solvation = -3609.236006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.64528 -40.59586 -39.59244 -37.97669 -36.00346 -34.96506 -33.75264 -32.61204 -31.99721 -29.13447 -28.00685 -26.41008 -25.82274 -23.70969 -23.08925 -22.31702 -21.11289 -20.33671 -19.13233 -18.86022 -17.60455 -17.35117 -16.60023 -16.40842 -16.33143 -16.18306 -15.88091 -15.48578 -15.08346 -14.66423 -14.58817 -14.06152 -14.01604 -13.38396 -13.33206 -13.18969 -13.01764 -12.98890 -12.87860 -12.83105 -12.59528 -12.23813 -12.06716 -11.93564 -11.58442 -11.52040 -11.14483 -10.94084 -10.76929 -10.58460 -10.05895 -9.91860 -8.94941 -7.92464 -5.20498 0.34312 0.44032 0.97355 1.46855 1.48049 1.51130 1.57141 1.84357 2.34656 2.58519 3.39330 3.47584 3.70332 3.77923 3.79746 3.90710 4.00189 4.09708 4.30497 4.39629 4.47684 4.61419 4.65859 4.66530 4.76575 4.84950 5.02361 5.03804 5.08457 5.11132 5.26739 5.39402 5.45743 5.55676 5.77998 5.96542 6.22521 6.29973 6.54508 7.21157 7.35321 8.14748 8.35942 9.30989 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.002610 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.157734 B =10723.895303 C =11389.418873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.170 3.830 3 N -0.427 5.427 4 H 0.467 0.533 5 N -0.297 5.297 6 C 0.146 3.854 7 Cl 0.010 6.990 8 C -0.303 4.303 9 C 0.600 3.400 10 O -0.575 6.575 11 N -0.700 5.700 12 C 0.137 3.863 13 C -0.093 4.093 14 H 0.125 0.875 15 C -0.135 4.135 16 C 0.142 3.858 17 H 0.081 0.919 18 N -0.731 5.731 19 C -0.242 4.242 20 H 0.079 0.921 21 C -0.080 4.080 22 N -0.973 5.973 23 Si 0.973 3.027 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.278 1.278 27 C -0.156 4.156 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.414 0.586 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.372 0.628 37 H 0.250 0.750 38 H 0.065 0.935 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 28.770 -6.137 30.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.036 3.964 3 N -0.139 5.139 4 H 0.318 0.682 5 N -0.123 5.123 6 C -0.046 4.046 7 Cl 0.038 6.962 8 C -0.318 4.318 9 C 0.384 3.616 10 O -0.455 6.455 11 N -0.350 5.350 12 C 0.014 3.986 13 C -0.112 4.112 14 H 0.143 0.857 15 C -0.174 4.174 16 C 0.033 3.967 17 H 0.099 0.901 18 N -0.368 5.368 19 C -0.374 4.374 20 H 0.097 0.903 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.802 3.198 24 H -0.202 1.202 25 H -0.225 1.225 26 H -0.205 1.205 27 C -0.197 4.197 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.251 0.749 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.203 0.797 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.747 29.256 -6.669 30.990 hybrid contribution 0.698 -1.322 0.550 1.593 sum -7.049 27.934 -6.119 29.452 Atomic orbital electron populations 1.20856 0.82626 1.06113 1.06314 1.21873 0.96203 0.84807 0.93510 1.45864 1.01789 1.09643 1.56557 0.68250 1.77106 0.98539 1.10241 1.26409 1.22675 0.88876 0.90910 1.02179 1.98435 1.35935 1.65047 1.96766 1.19768 0.91492 0.94435 1.26121 1.17311 0.75930 0.84824 0.83491 1.90787 1.52869 1.68775 1.33030 1.45897 1.67591 1.13063 1.08464 1.21305 0.99691 0.80709 0.96919 1.22466 0.97477 0.96554 0.94690 0.85726 1.23314 0.99685 0.95477 0.98943 1.21976 0.93299 0.84378 0.97070 0.90077 1.42641 1.69526 1.16886 1.07744 1.19700 1.29637 0.98754 0.89309 0.90322 1.25592 1.03338 0.98262 1.00013 1.69818 1.51885 1.13820 1.26830 0.85222 0.78327 0.77000 0.79295 1.20159 1.22474 1.20463 1.23742 0.96792 0.99190 0.99968 0.86407 0.86807 0.89868 0.74946 0.93642 0.90660 0.91523 0.90002 0.79670 0.94135 0.91668 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.45 10.25 71.23 0.73 0.28 16 2 C 0.17 2.13 7.29 42.15 0.31 2.44 16 3 N -0.43 -4.76 7.28 -46.80 -0.34 -5.10 16 4 H 0.47 1.16 8.96 -213.43 -1.91 -0.75 16 5 N -0.30 -5.98 12.64 -48.95 -0.62 -6.59 16 6 C 0.15 3.37 7.89 85.66 0.68 4.04 16 7 Cl 0.01 0.26 29.19 -2.72 -0.08 0.18 16 8 C -0.30 -6.33 5.88 -20.13 -0.12 -6.45 16 9 C 0.60 15.11 7.17 86.65 0.62 15.73 16 10 O -0.58 -19.52 17.11 -4.06 -0.07 -19.59 16 11 N -0.70 -14.58 5.55 -466.43 -2.59 -17.17 16 12 C 0.14 3.28 5.51 86.38 0.48 3.76 16 13 C -0.09 -2.15 3.75 -10.27 -0.04 -2.18 16 14 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 15 C -0.13 -3.95 7.39 31.12 0.23 -3.72 16 16 C 0.14 5.28 4.48 45.52 0.20 5.49 16 17 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 18 N -0.73 -36.81 5.40 -320.46 -1.73 -38.54 16 19 C -0.24 -13.42 9.97 84.03 0.84 -12.58 16 20 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 21 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 22 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 23 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 C -0.16 -4.94 7.43 31.12 0.23 -4.71 16 28 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.08 0.69 7.96 -2.39 -0.02 0.67 16 31 H 0.41 6.53 8.46 -92.70 -0.78 5.75 16 32 H 0.05 1.36 7.85 -2.39 -0.02 1.34 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.37 20.40 7.92 -92.70 -0.73 19.66 16 37 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.05 1.98 7.90 -2.39 -0.02 1.96 16 Total: -1.00 -77.81 353.85 -0.81 -78.62 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -2.32 Total: 22.13 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 4.62 Total: -2.09 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -5.00 Total: -127.64 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.07 Total: -19.59 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -0.08 Total: 0.18 kcal Total: -77.81 -0.81 -78.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086104826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.954 kcal (2) G-P(sol) polarization free energy of solvation -77.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds