Wall clock time and date at job start Fri Apr 10 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31239 * 124.05834 * 2 1 4 4 N 1.27336 * 120.03752 * 179.97438 * 3 2 1 5 5 S 1.56636 * 109.74118 * 359.69294 * 4 3 2 6 6 C 1.38244 * 124.05201 * 179.97438 * 2 1 3 7 7 C 1.47178 * 128.47724 * 0.02562 * 6 2 1 8 8 O 1.21623 * 119.99847 * 0.02562 * 7 6 2 9 9 N 1.34776 * 119.99700 * 180.02562 * 7 6 2 10 10 C 1.46497 * 119.99474 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46736 * 324.97006 * 10 9 7 12 12 C 1.53038 * 109.44960 * 84.93928 * 10 9 7 13 13 C 1.53197 * 109.31642 * 181.37607 * 12 10 9 14 14 N 1.46935 * 108.77466 * 305.36803 * 13 12 10 15 15 C 1.36932 * 120.63072 * 233.60715 * 14 13 12 16 16 H 1.08008 * 119.99892 * 27.67092 * 15 14 13 17 17 C 1.38808 * 120.00167 * 207.67700 * 15 14 13 18 18 N 1.31622 * 119.99777 * 17.36614 * 17 15 14 19 19 Si 1.86796 * 120.00057 * 197.36868 * 17 15 14 20 20 H 1.48502 * 109.47213 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47282 * 119.99948 * 19 17 15 22 22 H 1.48507 * 109.47075 * 239.99711 * 19 17 15 23 23 C 1.46924 * 118.73798 * 53.60112 * 14 13 12 24 24 C 1.53046 * 109.45869 * 204.99883 * 10 9 7 25 25 H 1.08998 * 109.49811 * 298.60991 * 24 10 9 26 26 O 1.42899 * 109.49624 * 58.68051 * 24 10 9 27 27 H 1.09003 * 109.46842 * 270.02636 * 1 2 3 28 28 H 1.09002 * 109.47011 * 30.02251 * 1 2 3 29 29 H 1.08996 * 109.47086 * 150.02704 * 1 2 3 30 30 H 0.96994 * 120.00498 * 359.97438 * 9 7 6 31 31 H 1.08996 * 109.49881 * 301.32770 * 12 10 9 32 32 H 1.09003 * 109.49873 * 61.42904 * 12 10 9 33 33 H 1.09007 * 109.58317 * 65.14825 * 13 12 10 34 34 H 1.08993 * 109.59255 * 185.57618 * 13 12 10 35 35 H 0.97003 * 119.99574 * 180.02562 * 18 17 15 36 36 H 1.08998 * 109.58340 * 186.60255 * 23 14 13 37 37 H 1.09009 * 109.58373 * 66.18472 * 23 14 13 38 38 H 0.96696 * 113.99955 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9366 -0.5098 0.0089 6 6 2.2811 -1.1454 0.0005 7 6 1.8393 -2.5493 0.0006 8 8 0.6520 -2.8131 -0.0002 9 7 2.7504 -3.5424 0.0017 10 6 2.3105 -4.9398 0.0012 11 1 1.3981 -5.0336 0.5901 12 6 2.0377 -5.3877 -1.4365 13 6 1.5451 -6.8383 -1.4305 14 7 2.5251 -7.6676 -0.7158 15 6 3.0538 -8.7857 -1.3036 16 1 3.1323 -8.8444 -2.3792 17 6 3.4886 -9.8436 -0.5171 18 7 3.0962 -9.9369 0.7358 19 14 4.6306 -11.1347 -1.2368 20 1 4.9205 -10.8038 -2.6552 21 1 5.8989 -11.1596 -0.4646 22 1 3.9799 -12.4676 -1.1630 23 6 2.9272 -7.2743 0.6416 24 6 3.4042 -5.8188 0.6123 25 1 4.3097 -5.7443 0.0100 26 8 3.6798 -5.3804 1.9442 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 3.6972 -3.3321 0.0020 31 1 1.2753 -4.7465 -1.8789 32 1 2.9559 -5.3178 -2.0198 33 1 0.5810 -6.8947 -0.9251 34 1 1.4439 -7.1942 -2.4558 35 1 3.4004 -10.6760 1.2855 36 1 3.7378 -7.9178 0.9834 37 1 2.0757 -7.3663 1.3159 38 1 4.3653 -5.8936 2.3933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090064725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:17 Heat of formation + Delta-G solvation = 8.412293 kcal Electronic energy + Delta-G solvation = -23864.144934 eV Core-core repulsion = 20256.002130 eV Total energy + Delta-G solvation = -3608.142803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.17513 -39.82754 -37.98091 -35.36605 -34.58889 -33.47471 -32.31774 -29.97834 -29.04278 -28.27707 -27.14659 -25.26442 -23.14162 -22.33597 -21.57226 -20.46360 -19.54975 -18.68645 -17.71642 -16.85093 -16.65926 -16.29330 -16.03805 -15.06071 -14.77303 -14.60666 -14.24103 -13.91310 -13.75183 -13.38997 -13.28206 -13.19590 -12.83564 -12.59197 -12.32474 -12.11935 -11.77707 -11.75816 -11.30989 -10.91629 -10.86092 -10.55460 -10.52692 -10.27336 -10.19138 -10.07292 -10.06185 -9.93835 -9.67688 -9.47243 -8.98399 -8.61563 -6.86085 -5.93721 -3.37319 -0.48513 0.58653 1.23439 1.72507 2.90064 2.95681 3.27961 3.37056 3.38757 3.66130 4.33792 4.35290 4.44266 4.64640 5.08051 5.22277 5.27693 5.33965 5.39410 5.46852 5.51235 5.80113 5.87799 5.92738 5.98105 6.06371 6.30042 6.33294 6.59451 6.64432 6.81401 7.03185 7.30521 7.38930 7.46432 7.66828 7.98301 8.04137 8.28870 9.04391 9.67083 10.22645 11.14739 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.003210 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.809954 B = 8720.028837 C = 9036.371924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.097 3.903 3 N -0.251 5.251 4 N -0.257 5.257 5 S 0.414 5.586 6 C -0.284 4.284 7 C 0.599 3.401 8 O -0.516 6.516 9 N -0.704 5.704 10 C 0.163 3.837 11 H 0.094 0.906 12 C -0.141 4.141 13 C 0.145 3.855 14 N -0.589 5.589 15 C -0.257 4.257 16 H 0.070 0.930 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.148 3.852 24 C 0.071 3.929 25 H 0.054 0.946 26 O -0.574 6.574 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.396 0.604 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.062 0.938 35 H 0.255 0.745 36 H 0.095 0.905 37 H 0.031 0.969 38 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.472 16.136 -0.656 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 N -0.118 5.118 4 N -0.238 5.238 5 S 0.550 5.450 6 C -0.425 4.425 7 C 0.382 3.618 8 O -0.392 6.392 9 N -0.353 5.353 10 C 0.059 3.941 11 H 0.112 0.888 12 C -0.181 4.181 13 C 0.018 3.982 14 N -0.313 5.313 15 C -0.386 4.386 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.021 3.979 24 C 0.010 3.990 25 H 0.072 0.928 26 O -0.378 6.378 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.230 0.770 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.049 0.951 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.825 17.353 -0.685 17.462 hybrid contribution 0.337 -1.568 -0.096 1.607 sum 2.161 15.785 -0.781 15.952 Atomic orbital electron populations 1.20538 0.83695 1.05019 1.04427 1.22968 1.00266 0.85025 0.96674 1.70613 0.96953 1.28051 1.16163 1.78858 1.09466 1.15724 1.19726 1.82585 1.10095 1.01409 1.50936 1.27900 0.97888 1.00335 1.16409 1.16434 0.86199 0.81783 0.77367 1.90813 1.15700 1.82875 1.49847 1.46033 1.08971 1.06720 1.73599 1.21140 0.98568 0.76999 0.97358 0.88833 1.22451 1.01577 0.99499 0.94582 1.20944 0.91947 0.88226 0.97076 1.44028 1.46049 1.27098 1.14120 1.19247 1.35018 0.92706 0.91646 0.91252 1.25080 1.00862 0.97021 0.96609 1.70037 1.44886 1.31978 1.07601 0.86212 0.80535 0.81346 0.78607 1.20160 1.21495 1.21603 1.21428 1.00311 0.89001 0.87152 1.23000 0.96401 0.97140 0.82432 0.92841 1.86402 1.62375 1.60600 1.28469 0.89307 0.89962 0.87884 0.77010 0.91607 0.91822 0.95689 0.91949 0.93487 0.88658 0.95098 0.77515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 9.90 36.01 0.36 -0.40 16 2 C 0.10 1.17 7.00 -82.84 -0.58 0.59 16 3 N -0.25 -3.22 11.54 33.42 0.39 -2.83 16 4 N -0.26 -3.13 12.51 60.35 0.75 -2.37 16 5 S 0.41 4.03 23.05 -107.50 -2.48 1.55 16 6 C -0.28 -3.44 6.81 -35.95 -0.24 -3.68 16 7 C 0.60 8.50 7.77 -12.63 -0.10 8.40 16 8 O -0.52 -8.62 14.55 5.26 0.08 -8.55 16 9 N -0.70 -9.63 4.91 -54.92 -0.27 -9.90 16 10 C 0.16 2.67 2.12 -67.89 -0.14 2.53 16 11 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 12 C -0.14 -2.32 5.65 -26.61 -0.15 -2.47 16 13 C 0.14 2.85 6.52 -3.70 -0.02 2.83 16 14 N -0.59 -13.66 3.00 -172.31 -0.52 -14.18 16 15 C -0.26 -6.59 9.58 -15.06 -0.14 -6.73 16 16 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 17 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 18 N -0.90 -24.64 11.19 55.49 0.62 -24.02 16 19 Si 0.90 20.46 29.59 -169.99 -5.03 15.43 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.15 3.22 4.94 -3.71 -0.02 3.20 16 24 C 0.07 1.22 3.14 -26.61 -0.08 1.14 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 O -0.57 -8.95 13.16 -35.23 -0.46 -9.41 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.10 1.12 6.47 -51.93 -0.34 0.79 16 30 H 0.40 4.52 8.03 -40.82 -0.33 4.19 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.10 2.28 6.04 -51.93 -0.31 1.97 16 37 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.38 4.66 9.08 45.56 0.41 5.07 16 LS Contribution 331.46 15.07 5.00 5.00 Total: -1.00 -30.38 331.46 -7.02 -37.40 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.88 Total: 6.48 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.22 Total: 5.40 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.98 Total: -53.30 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.39 Total: -17.96 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -2.48 Total: 1.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.38 -7.02 -37.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090064725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.809 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds