Wall clock time and date at job start Fri Apr 10 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31239 * 124.05834 * 2 1 4 4 N 1.27336 * 120.03752 * 179.97438 * 3 2 1 5 5 S 1.56636 * 109.74118 * 359.69294 * 4 3 2 6 6 C 1.38244 * 124.05201 * 179.97438 * 2 1 3 7 7 C 1.47178 * 128.47724 * 0.02562 * 6 2 1 8 8 O 1.21623 * 119.99847 * 0.02562 * 7 6 2 9 9 N 1.34776 * 119.99700 * 180.02562 * 7 6 2 10 10 C 1.46497 * 119.99474 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46736 * 324.97006 * 10 9 7 12 12 C 1.53038 * 109.44960 * 84.93928 * 10 9 7 13 13 C 1.53197 * 109.31642 * 181.37607 * 12 10 9 14 14 N 1.46935 * 108.77466 * 305.36803 * 13 12 10 15 15 C 1.36932 * 120.63072 * 233.60715 * 14 13 12 16 16 H 1.08008 * 119.99892 * 27.67092 * 15 14 13 17 17 C 1.38808 * 120.00167 * 207.67700 * 15 14 13 18 18 N 1.31622 * 119.99777 * 17.36614 * 17 15 14 19 19 Si 1.86796 * 120.00057 * 197.36868 * 17 15 14 20 20 H 1.48502 * 109.47213 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47282 * 119.99948 * 19 17 15 22 22 H 1.48507 * 109.47075 * 239.99711 * 19 17 15 23 23 C 1.46924 * 118.73798 * 53.60112 * 14 13 12 24 24 C 1.53046 * 109.45869 * 204.99883 * 10 9 7 25 25 H 1.08998 * 109.49811 * 298.60991 * 24 10 9 26 26 O 1.42899 * 109.49624 * 58.68051 * 24 10 9 27 27 H 1.09003 * 109.46842 * 270.02636 * 1 2 3 28 28 H 1.09002 * 109.47011 * 30.02251 * 1 2 3 29 29 H 1.08996 * 109.47086 * 150.02704 * 1 2 3 30 30 H 0.96994 * 120.00498 * 359.97438 * 9 7 6 31 31 H 1.08996 * 109.49881 * 301.32770 * 12 10 9 32 32 H 1.09003 * 109.49873 * 61.42904 * 12 10 9 33 33 H 1.09007 * 109.58317 * 65.14825 * 13 12 10 34 34 H 1.08993 * 109.59255 * 185.57618 * 13 12 10 35 35 H 0.97003 * 119.99574 * 180.02562 * 18 17 15 36 36 H 1.08998 * 109.58340 * 186.60255 * 23 14 13 37 37 H 1.09009 * 109.58373 * 66.18472 * 23 14 13 38 38 H 0.96696 * 113.99955 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9366 -0.5098 0.0089 6 6 2.2811 -1.1454 0.0005 7 6 1.8393 -2.5493 0.0006 8 8 0.6520 -2.8131 -0.0002 9 7 2.7504 -3.5424 0.0017 10 6 2.3105 -4.9398 0.0012 11 1 1.3981 -5.0336 0.5901 12 6 2.0377 -5.3877 -1.4365 13 6 1.5451 -6.8383 -1.4305 14 7 2.5251 -7.6676 -0.7158 15 6 3.0538 -8.7857 -1.3036 16 1 3.1323 -8.8444 -2.3792 17 6 3.4886 -9.8436 -0.5171 18 7 3.0962 -9.9369 0.7358 19 14 4.6306 -11.1347 -1.2368 20 1 4.9205 -10.8038 -2.6552 21 1 5.8989 -11.1596 -0.4646 22 1 3.9799 -12.4676 -1.1630 23 6 2.9272 -7.2743 0.6416 24 6 3.4042 -5.8188 0.6123 25 1 4.3097 -5.7443 0.0100 26 8 3.6798 -5.3804 1.9442 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 3.6972 -3.3321 0.0020 31 1 1.2753 -4.7465 -1.8789 32 1 2.9559 -5.3178 -2.0198 33 1 0.5810 -6.8947 -0.9251 34 1 1.4439 -7.1942 -2.4558 35 1 3.4004 -10.6760 1.2855 36 1 3.7378 -7.9178 0.9834 37 1 2.0757 -7.3663 1.3159 38 1 4.3653 -5.8936 2.3933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090064725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:17 Heat of formation + Delta-G solvation = -15.358902 kcal Electronic energy + Delta-G solvation = -23865.175730 eV Core-core repulsion = 20256.002130 eV Total energy + Delta-G solvation = -3609.173600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.09738 -41.04201 -39.38372 -36.87626 -35.94097 -34.39827 -33.97628 -31.52142 -30.56072 -29.37629 -28.03726 -26.95332 -24.52550 -23.75596 -22.94546 -21.61432 -21.00206 -19.56160 -19.09537 -18.33312 -18.09174 -17.34606 -17.20909 -16.69536 -16.01427 -15.86713 -15.56101 -15.30154 -15.07878 -15.00666 -14.45611 -14.10579 -13.96002 -13.84424 -13.55443 -13.51278 -13.33918 -13.04537 -12.68115 -12.57837 -12.51725 -12.09940 -11.98056 -11.86566 -11.54979 -11.36239 -11.12458 -10.96355 -10.92007 -10.79935 -10.59831 -10.17938 -8.74872 -7.89625 -5.36024 -1.39534 -0.27520 0.37142 0.80075 1.48472 1.52229 1.61734 1.80310 1.84604 2.51002 2.78272 3.10980 3.27596 3.45534 3.61107 3.64087 3.91559 4.06066 4.23544 4.32341 4.42593 4.47187 4.64844 4.67848 4.76894 4.86925 4.94661 5.07164 5.17013 5.18695 5.33090 5.35510 5.59142 5.66291 6.27416 6.35260 6.53807 6.83192 6.94864 7.11993 7.79698 8.31679 9.17020 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.003210 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.809954 B = 8720.028837 C = 9036.371924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.098 3.902 3 N -0.272 5.272 4 N -0.281 5.281 5 S 0.500 5.500 6 C -0.311 4.311 7 C 0.603 3.397 8 O -0.545 6.545 9 N -0.695 5.695 10 C 0.171 3.829 11 H 0.067 0.933 12 C -0.125 4.125 13 C 0.141 3.859 14 N -0.605 5.605 15 C -0.263 4.263 16 H 0.073 0.927 17 C -0.047 4.047 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.297 1.297 23 C 0.156 3.844 24 C 0.091 3.909 25 H 0.070 0.930 26 O -0.574 6.574 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.410 0.590 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.012 0.988 34 H 0.067 0.933 35 H 0.251 0.749 36 H 0.071 0.929 37 H -0.003 1.003 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 17.526 -1.519 17.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.050 4.050 3 N -0.137 5.137 4 N -0.262 5.262 5 S 0.636 5.364 6 C -0.452 4.452 7 C 0.388 3.612 8 O -0.424 6.424 9 N -0.345 5.345 10 C 0.067 3.933 11 H 0.085 0.915 12 C -0.165 4.165 13 C 0.015 3.985 14 N -0.330 5.330 15 C -0.393 4.393 16 H 0.091 0.909 17 C -0.243 4.243 18 N -0.579 5.579 19 Si 0.795 3.205 20 H -0.190 1.190 21 H -0.214 1.214 22 H -0.225 1.225 23 C 0.029 3.971 24 C 0.030 3.970 25 H 0.087 0.913 26 O -0.381 6.381 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.246 0.754 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.030 0.970 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.015 0.985 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.387 18.787 -1.555 19.154 hybrid contribution -0.133 -1.991 0.200 2.005 sum 3.253 16.796 -1.355 17.162 Atomic orbital electron populations 1.20582 0.82791 1.05274 1.04975 1.23250 1.01079 0.84881 0.95755 1.70686 0.97133 1.28446 1.17458 1.78633 1.09587 1.17793 1.20143 1.82241 1.07232 0.98970 1.47913 1.27684 0.99966 0.99170 1.18359 1.16577 0.85708 0.82480 0.76463 1.90804 1.16995 1.83535 1.51024 1.45754 1.09735 1.05423 1.73634 1.20799 0.97227 0.78508 0.96813 0.91475 1.22246 1.02338 0.97078 0.94856 1.21051 0.90876 0.89872 0.96680 1.44275 1.46980 1.27170 1.14528 1.19576 1.34390 0.93383 0.91987 0.90940 1.25788 1.02426 0.99038 0.97000 1.70188 1.46295 1.32631 1.08823 0.85223 0.78445 0.78443 0.78389 1.18961 1.21419 1.22458 1.21232 0.98125 0.91732 0.85998 1.22575 0.96873 0.94027 0.83540 0.91263 1.86384 1.63226 1.60602 1.27851 0.88562 0.88259 0.88979 0.75391 0.90497 0.90478 0.97000 0.91460 0.93978 0.91069 0.98484 0.75707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 9.90 71.24 0.71 -0.73 16 2 C 0.10 2.21 7.00 42.65 0.30 2.51 16 3 N -0.27 -6.50 11.54 -48.18 -0.56 -7.06 16 4 N -0.28 -6.20 12.51 37.02 0.46 -5.73 16 5 S 0.50 8.29 23.05 -56.49 -1.30 6.99 16 6 C -0.31 -6.91 6.81 24.62 0.17 -6.74 16 7 C 0.60 16.18 7.77 86.59 0.67 16.85 16 8 O -0.55 -17.89 14.55 -4.10 -0.06 -17.95 16 9 N -0.70 -17.54 4.91 -445.92 -2.19 -19.73 16 10 C 0.17 5.43 2.12 45.02 0.10 5.52 16 11 H 0.07 2.54 7.58 -2.39 -0.02 2.52 16 12 C -0.13 -3.93 5.65 30.67 0.17 -3.76 16 13 C 0.14 5.53 6.52 86.36 0.56 6.10 16 14 N -0.60 -28.21 3.00 -699.06 -2.09 -30.30 16 15 C -0.26 -13.49 9.58 84.03 0.81 -12.68 16 16 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 17 C -0.05 -2.45 4.91 84.86 0.42 -2.04 16 18 N -0.93 -52.19 11.19 21.65 0.24 -51.94 16 19 Si 0.97 42.10 29.59 68.60 2.03 44.13 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 21 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.30 -13.24 7.11 99.48 0.71 -12.54 16 23 C 0.16 6.90 4.94 86.36 0.43 7.32 16 24 C 0.09 3.01 3.14 30.67 0.10 3.11 16 25 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 26 O -0.57 -17.02 13.16 -148.98 -1.96 -18.98 16 27 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.09 1.96 6.47 -2.39 -0.02 1.94 16 30 H 0.41 8.06 8.03 -92.71 -0.74 7.32 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.07 2.53 7.93 -2.39 -0.02 2.51 16 35 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 36 H 0.07 3.48 6.04 -2.39 -0.01 3.47 16 37 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 38 H 0.39 9.07 9.08 -74.06 -0.67 8.40 16 Total: -1.00 -65.70 331.46 -1.30 -67.00 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -0.29 Total: 18.11 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 4.42 Total: 15.47 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -4.14 Total: -114.77 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -2.02 Total: -36.94 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 8.29 SS G_CDS: -1.30 Total: 6.99 kcal Total: -65.70 -1.30 -67.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090064725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.646 kcal (2) G-P(sol) polarization free energy of solvation -65.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds