Wall clock time and date at job start Fri Apr 10 2020 18:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35643 * 124.93098 * 2 1 4 4 C 1.35461 * 107.13078 * 179.97438 * 3 2 1 5 5 Cl 1.73594 * 127.23894 * 179.97438 * 4 3 2 6 6 C 1.41552 * 105.52176 * 0.02562 * 4 3 2 7 7 C 1.47669 * 126.46189 * 180.02562 * 6 4 3 8 8 O 1.21579 * 119.99768 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00283 * 179.97438 * 7 6 4 10 10 C 1.46496 * 120.00230 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47233 * 180.02562 * 10 9 7 12 12 C 1.53779 * 113.61342 * 274.13899 * 11 10 9 13 13 C 1.53959 * 87.01867 * 220.04863 * 12 11 10 14 14 N 1.46502 * 113.53510 * 270.81289 * 13 12 11 15 15 C 1.36937 * 119.99959 * 252.49380 * 14 13 12 16 16 H 1.07999 * 119.99795 * 0.02562 * 15 14 13 17 17 C 1.38808 * 119.99983 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00159 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00103 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46890 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47132 * 119.99935 * 19 17 15 22 22 H 1.48493 * 109.47266 * 240.00051 * 19 17 15 23 23 C 1.53774 * 87.11021 * 25.36212 * 13 12 11 24 24 N 1.28468 * 124.93624 * 179.68977 * 2 1 3 25 25 H 1.09001 * 109.47060 * 90.00755 * 1 2 3 26 26 H 1.09004 * 109.47073 * 210.00244 * 1 2 3 27 27 H 1.09000 * 109.47212 * 330.00326 * 1 2 3 28 28 H 1.07997 * 126.43605 * 359.95528 * 3 2 1 29 29 H 0.97000 * 119.99694 * 0.02562 * 9 7 6 30 30 H 1.08996 * 109.47316 * 300.00350 * 10 9 7 31 31 H 1.09006 * 109.46890 * 59.99856 * 10 9 7 32 32 H 1.08998 * 112.84911 * 45.33190 * 11 10 9 33 33 H 1.09004 * 113.61608 * 334.56589 * 12 11 10 34 34 H 1.09004 * 113.61567 * 105.47170 * 12 11 10 35 35 H 1.09001 * 113.74252 * 139.94675 * 13 12 11 36 36 H 0.96994 * 119.99873 * 72.49191 * 14 13 12 37 37 H 0.97001 * 119.99945 * 180.02562 * 18 17 15 38 38 H 1.09001 * 113.61363 * 220.09086 * 23 13 12 39 39 H 1.08998 * 113.61258 * 89.18986 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2417 1.1121 0.0000 4 6 3.5315 0.6980 0.0006 5 17 4.9542 1.6927 0.0002 6 6 3.4752 -0.7164 0.0003 7 6 4.6270 -1.6405 0.0013 8 8 5.7601 -1.1997 0.0019 9 7 4.4223 -2.9727 0.0014 10 6 5.5649 -3.8894 0.0018 11 6 5.0601 -5.3337 0.0012 12 6 4.7601 -5.8819 1.4063 13 6 5.3836 -7.2081 0.9343 14 7 4.4184 -8.1216 0.3177 15 6 4.0159 -9.2462 0.9872 16 1 4.4096 -9.4595 1.9700 17 6 3.1018 -10.1120 0.4028 18 7 2.6223 -9.8523 -0.7951 19 14 2.5531 -11.6466 1.3158 20 1 3.2345 -11.7086 2.6338 21 1 1.0830 -11.6016 1.5208 22 1 2.9052 -12.8492 0.5190 23 6 6.1845 -6.3793 -0.0837 24 7 2.2007 -1.0531 0.0057 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.8967 2.1354 -0.0007 29 1 3.5183 -3.3244 0.0005 30 1 6.1701 -3.7161 -0.8880 31 1 6.1697 -3.7158 0.8919 32 1 4.2542 -5.5001 -0.7136 33 1 5.3267 -5.3901 2.1970 34 1 3.6955 -5.9537 1.6289 35 1 6.0046 -7.6936 1.6872 36 1 4.0646 -7.9298 -0.5648 37 1 1.9832 -10.4572 -1.2034 38 1 6.2682 -6.8520 -1.0623 39 1 7.1412 -6.0237 0.2989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091045005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:27 Heat of formation + Delta-G solvation = 72.119192 kcal Electronic energy + Delta-G solvation = -22643.598395 eV Core-core repulsion = 19036.174424 eV Total energy + Delta-G solvation = -3607.423971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.01290 -39.51822 -38.35199 -36.69806 -34.59228 -33.77815 -33.13517 -31.04398 -30.16159 -28.40048 -26.86005 -25.01636 -23.89730 -23.03088 -21.93215 -21.55038 -20.24296 -18.56577 -18.03879 -17.27131 -16.77710 -16.73480 -15.84723 -15.20014 -14.95985 -14.82605 -14.44718 -14.14401 -13.88545 -13.56711 -13.48329 -13.21974 -13.03619 -12.85972 -12.21741 -12.08719 -11.88243 -11.82681 -11.35838 -11.02481 -10.87721 -10.84623 -10.45777 -10.19600 -10.11426 -9.79904 -9.68594 -9.67867 -9.43881 -9.12653 -8.90825 -8.84763 -6.98607 -5.80036 -3.08795 1.25556 1.56543 1.61656 2.38478 3.19226 3.30144 3.41701 3.47713 3.49818 4.02025 4.28047 4.55639 4.56460 4.60253 4.85581 4.90281 5.04230 5.11775 5.14967 5.28543 5.46977 5.63659 5.68051 5.75570 5.91126 6.00426 6.14844 6.20522 6.25707 6.41162 6.47185 6.63133 6.78825 6.93829 7.08128 7.32043 7.64460 7.70390 8.22868 8.39288 9.49956 10.08066 10.42295 11.42522 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.002597 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.960488 B =10777.727833 C =11935.664413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.280 5.280 3 C -0.004 4.004 4 C -0.103 4.103 5 Cl -0.009 7.009 6 C 0.000 4.000 7 C 0.596 3.404 8 O -0.523 6.523 9 N -0.709 5.709 10 C 0.132 3.868 11 C -0.120 4.120 12 C -0.169 4.169 13 C 0.167 3.833 14 N -0.706 5.706 15 C -0.240 4.240 16 H 0.073 0.927 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.147 4.147 24 N -0.243 5.243 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.192 0.808 29 H 0.408 0.592 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.068 0.932 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 25.057 1.014 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.068 5.068 3 C -0.148 4.148 4 C -0.141 4.141 5 Cl 0.019 6.981 6 C -0.161 4.161 7 C 0.379 3.621 8 O -0.397 6.397 9 N -0.360 5.360 10 C 0.009 3.991 11 C -0.138 4.138 12 C -0.210 4.210 13 C 0.055 3.945 14 N -0.345 5.345 15 C -0.371 4.371 16 H 0.091 0.909 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.187 4.187 24 N -0.079 5.079 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.209 0.791 29 H 0.243 0.757 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.153 24.328 1.132 24.557 hybrid contribution -0.554 0.000 0.090 0.561 sum -3.707 24.327 1.222 24.639 Atomic orbital electron populations 1.22297 0.72034 1.05982 1.04993 1.45392 1.08072 1.02642 1.50699 1.22629 0.89364 0.94256 1.08564 1.20836 0.89380 0.91121 1.12764 1.98365 1.35622 1.66957 1.97120 1.21978 0.91346 0.92554 1.10231 1.16778 0.86333 0.81705 0.77236 1.90830 1.21942 1.77039 1.49896 1.45903 1.11347 1.05007 1.73757 1.21532 0.87677 0.87956 1.01962 1.22709 0.99933 0.91319 0.99872 1.23916 1.01891 1.00621 0.94529 1.21097 0.90825 0.88774 0.93815 1.42187 1.48879 1.23705 1.19707 1.19340 1.19618 0.98529 0.99627 0.90944 1.24763 1.00052 0.99324 0.96844 1.69674 1.34663 1.38541 1.15207 0.86103 0.78125 0.83100 0.78785 1.20493 1.21887 1.21841 1.23435 0.96819 0.96962 1.01460 1.73672 1.02095 1.13882 1.18290 0.89185 0.87895 0.88278 0.79116 0.75693 0.91552 0.91301 0.88867 0.91373 0.91513 0.91950 0.78106 0.93522 0.91304 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.30 11.32 59.85 0.68 0.97 16 2 N -0.28 -2.34 3.72 -67.94 -0.25 -2.59 16 3 C 0.00 -0.04 11.49 -16.86 -0.19 -0.23 16 4 C -0.10 -1.21 6.80 -39.31 -0.27 -1.47 16 5 Cl -0.01 -0.11 28.17 -51.86 -1.46 -1.57 16 6 C 0.00 0.00 7.13 -82.76 -0.59 -0.59 16 7 C 0.60 9.07 7.82 -12.41 -0.10 8.97 16 8 O -0.52 -9.17 15.87 5.30 0.08 -9.09 16 9 N -0.71 -9.95 5.55 -61.31 -0.34 -10.29 16 10 C 0.13 1.86 5.50 -4.05 -0.02 1.84 16 11 C -0.12 -1.85 3.62 -89.81 -0.33 -2.17 16 12 C -0.17 -2.87 7.44 -25.83 -0.19 -3.06 16 13 C 0.17 3.29 4.57 -67.03 -0.31 2.98 16 14 N -0.71 -17.49 5.31 -52.55 -0.28 -17.77 16 15 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 19 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 C -0.15 -2.39 7.39 -25.92 -0.19 -2.58 16 24 N -0.24 -2.87 11.66 33.42 0.39 -2.48 16 25 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.10 0.05 8.13 -51.93 -0.42 -0.37 16 28 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 29 H 0.41 5.42 8.19 -40.82 -0.33 5.09 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.38 10.08 7.90 -40.82 -0.32 9.76 16 37 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -33.97 352.04 -7.85 -41.83 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.25 Total: 9.23 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.75 Total: -2.59 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.24 Total: -60.30 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.46 Total: -1.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.97 -7.85 -41.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091045005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.946 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds