Wall clock time and date at job start Fri Apr 10 2020 18:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35643 * 124.93098 * 2 1 4 4 C 1.35461 * 107.13078 * 179.97438 * 3 2 1 5 5 Cl 1.73594 * 127.23894 * 179.97438 * 4 3 2 6 6 C 1.41552 * 105.52176 * 0.02562 * 4 3 2 7 7 C 1.47669 * 126.46189 * 180.02562 * 6 4 3 8 8 O 1.21579 * 119.99768 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00283 * 179.97438 * 7 6 4 10 10 C 1.46496 * 120.00230 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47233 * 180.02562 * 10 9 7 12 12 C 1.53779 * 113.61342 * 274.13899 * 11 10 9 13 13 C 1.53959 * 87.01867 * 220.04863 * 12 11 10 14 14 N 1.46502 * 113.53510 * 270.81289 * 13 12 11 15 15 C 1.36937 * 119.99959 * 252.49380 * 14 13 12 16 16 H 1.07999 * 119.99795 * 0.02562 * 15 14 13 17 17 C 1.38808 * 119.99983 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00159 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00103 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46890 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47132 * 119.99935 * 19 17 15 22 22 H 1.48493 * 109.47266 * 240.00051 * 19 17 15 23 23 C 1.53774 * 87.11021 * 25.36212 * 13 12 11 24 24 N 1.28468 * 124.93624 * 179.68977 * 2 1 3 25 25 H 1.09001 * 109.47060 * 90.00755 * 1 2 3 26 26 H 1.09004 * 109.47073 * 210.00244 * 1 2 3 27 27 H 1.09000 * 109.47212 * 330.00326 * 1 2 3 28 28 H 1.07997 * 126.43605 * 359.95528 * 3 2 1 29 29 H 0.97000 * 119.99694 * 0.02562 * 9 7 6 30 30 H 1.08996 * 109.47316 * 300.00350 * 10 9 7 31 31 H 1.09006 * 109.46890 * 59.99856 * 10 9 7 32 32 H 1.08998 * 112.84911 * 45.33190 * 11 10 9 33 33 H 1.09004 * 113.61608 * 334.56589 * 12 11 10 34 34 H 1.09004 * 113.61567 * 105.47170 * 12 11 10 35 35 H 1.09001 * 113.74252 * 139.94675 * 13 12 11 36 36 H 0.96994 * 119.99873 * 72.49191 * 14 13 12 37 37 H 0.97001 * 119.99945 * 180.02562 * 18 17 15 38 38 H 1.09001 * 113.61363 * 220.09086 * 23 13 12 39 39 H 1.08998 * 113.61258 * 89.18986 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2417 1.1121 0.0000 4 6 3.5315 0.6980 0.0006 5 17 4.9542 1.6927 0.0002 6 6 3.4752 -0.7164 0.0003 7 6 4.6270 -1.6405 0.0013 8 8 5.7601 -1.1997 0.0019 9 7 4.4223 -2.9727 0.0014 10 6 5.5649 -3.8894 0.0018 11 6 5.0601 -5.3337 0.0012 12 6 4.7601 -5.8819 1.4063 13 6 5.3836 -7.2081 0.9343 14 7 4.4184 -8.1216 0.3177 15 6 4.0159 -9.2462 0.9872 16 1 4.4096 -9.4595 1.9700 17 6 3.1018 -10.1120 0.4028 18 7 2.6223 -9.8523 -0.7951 19 14 2.5531 -11.6466 1.3158 20 1 3.2345 -11.7086 2.6338 21 1 1.0830 -11.6016 1.5208 22 1 2.9052 -12.8492 0.5190 23 6 6.1845 -6.3793 -0.0837 24 7 2.2007 -1.0531 0.0057 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.8967 2.1354 -0.0007 29 1 3.5183 -3.3244 0.0005 30 1 6.1701 -3.7161 -0.8880 31 1 6.1697 -3.7158 0.8919 32 1 4.2542 -5.5001 -0.7136 33 1 5.3267 -5.3901 2.1970 34 1 3.6955 -5.9537 1.6289 35 1 6.0046 -7.6936 1.6872 36 1 4.0646 -7.9298 -0.5648 37 1 1.9832 -10.4572 -1.2034 38 1 6.2682 -6.8520 -1.0623 39 1 7.1412 -6.0237 0.2989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091045005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:27 Heat of formation + Delta-G solvation = 48.078103 kcal Electronic energy + Delta-G solvation = -22644.640895 eV Core-core repulsion = 19036.174424 eV Total energy + Delta-G solvation = -3608.466471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.75737 -40.74776 -39.73409 -37.52676 -36.01264 -34.99181 -34.34968 -32.13627 -31.70433 -29.41615 -27.84714 -26.42810 -25.72752 -24.15986 -22.88923 -22.62618 -21.27083 -19.88037 -19.37128 -18.90923 -17.63519 -17.47086 -17.05962 -16.65501 -16.29473 -15.80491 -15.72525 -15.56374 -15.09290 -14.77113 -14.57282 -14.50264 -13.91449 -13.67266 -13.51629 -13.27670 -12.94502 -12.91551 -12.83150 -12.65312 -12.63361 -12.12738 -12.04393 -11.79675 -11.54920 -11.47412 -11.13890 -10.91741 -10.78097 -10.45713 -10.09375 -9.83015 -8.99484 -7.94977 -5.23289 0.36339 0.83131 0.93757 1.48147 1.48510 1.58774 1.68455 2.16820 2.22942 2.56038 3.31413 3.37736 3.66608 3.73167 3.80139 3.83314 3.97238 4.15654 4.30199 4.33280 4.41315 4.41439 4.45331 4.71302 4.72172 4.75456 4.85645 4.94265 4.99936 5.12319 5.26368 5.35602 5.47370 5.54657 5.64173 5.67023 6.28888 6.37161 6.69668 7.10847 7.33655 8.10858 8.33304 9.28617 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.002597 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.960488 B =10777.727833 C =11935.664413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.270 5.270 3 C 0.023 3.977 4 C -0.133 4.133 5 Cl -0.020 7.020 6 C -0.032 4.032 7 C 0.593 3.407 8 O -0.554 6.554 9 N -0.706 5.706 10 C 0.141 3.859 11 C -0.103 4.103 12 C -0.154 4.154 13 C 0.145 3.855 14 N -0.720 5.720 15 C -0.240 4.240 16 H 0.077 0.923 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.973 3.027 20 H -0.266 1.266 21 H -0.294 1.294 22 H -0.294 1.294 23 C -0.132 4.132 24 N -0.261 5.261 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.136 0.864 28 H 0.237 0.763 29 H 0.411 0.589 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.059 0.941 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 26.657 1.907 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.059 5.059 3 C -0.122 4.122 4 C -0.170 4.170 5 Cl 0.009 6.991 6 C -0.191 4.191 7 C 0.378 3.622 8 O -0.431 6.431 9 N -0.357 5.357 10 C 0.018 3.982 11 C -0.122 4.122 12 C -0.195 4.195 13 C 0.035 3.965 14 N -0.359 5.359 15 C -0.372 4.372 16 H 0.095 0.905 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.802 3.198 20 H -0.190 1.190 21 H -0.221 1.221 22 H -0.221 1.221 23 C -0.171 4.171 24 N -0.099 5.099 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.155 0.845 28 H 0.254 0.746 29 H 0.246 0.754 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.949 25.940 2.060 26.319 hybrid contribution -0.363 -0.411 -0.162 0.572 sum -4.312 25.529 1.898 25.960 Atomic orbital electron populations 1.22785 0.69101 1.07810 1.06632 1.45951 1.09580 1.02001 1.48357 1.23270 0.87877 0.95801 1.05235 1.21081 0.90482 0.90541 1.14912 1.98351 1.36583 1.66909 1.97286 1.21794 0.91466 0.93121 1.12768 1.17077 0.86680 0.81977 0.76461 1.90796 1.23250 1.77549 1.51472 1.45874 1.11405 1.04932 1.73496 1.21397 0.87697 0.86869 1.02279 1.22491 0.99177 0.92156 0.98403 1.23753 1.00684 0.98973 0.96072 1.21417 0.90873 0.89159 0.95066 1.42328 1.49996 1.24140 1.19393 1.19711 1.18765 0.99064 0.99678 0.90530 1.25559 1.00916 1.02530 0.97855 1.69823 1.35701 1.39686 1.16820 0.85079 0.77360 0.79304 0.78061 1.19038 1.22089 1.22110 1.23337 0.97920 0.95887 0.99981 1.73621 1.01809 1.15475 1.18958 0.87592 0.88078 0.84549 0.74632 0.75361 0.91355 0.90839 0.90330 0.88993 0.93554 0.92006 0.79388 0.94035 0.92263 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.32 127.77 1.45 1.71 16 2 N -0.27 -3.84 3.72 -368.85 -1.37 -5.21 16 3 C 0.02 0.30 11.49 83.46 0.96 1.26 16 4 C -0.13 -2.94 6.80 22.45 0.15 -2.79 16 5 Cl -0.02 -0.46 28.17 -2.72 -0.08 -0.53 16 6 C -0.03 -0.85 7.13 42.46 0.30 -0.55 16 7 C 0.59 18.14 7.82 86.73 0.68 18.82 16 8 O -0.55 -19.63 15.87 -3.96 -0.06 -19.70 16 9 N -0.71 -19.74 5.55 -466.15 -2.59 -22.33 16 10 C 0.14 3.85 5.50 86.38 0.47 4.33 16 11 C -0.10 -3.13 3.62 -10.27 -0.04 -3.17 16 12 C -0.15 -5.12 7.44 31.18 0.23 -4.89 16 13 C 0.14 5.62 4.57 45.58 0.21 5.83 16 14 N -0.72 -36.13 5.31 -320.17 -1.70 -37.83 16 15 C -0.24 -13.31 9.97 84.03 0.84 -12.48 16 16 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 17 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 18 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 19 Si 0.97 46.02 29.55 68.60 2.03 48.04 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 23 C -0.13 -4.13 7.39 31.12 0.23 -3.90 16 24 N -0.26 -5.90 11.66 -48.17 -0.56 -6.46 16 25 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 27 H 0.14 -0.50 8.13 -2.39 -0.02 -0.52 16 28 H 0.24 0.71 8.06 -2.91 -0.02 0.69 16 29 H 0.41 10.97 8.19 -92.71 -0.76 10.22 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 1.98 7.88 -2.38 -0.02 1.96 16 32 H 0.08 2.64 8.14 -2.39 -0.02 2.63 16 33 H 0.09 2.64 7.92 -2.39 -0.02 2.62 16 34 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.06 2.39 8.10 -2.39 -0.02 2.37 16 36 H 0.37 20.10 7.90 -92.71 -0.73 19.37 16 37 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.11 2.76 8.10 -2.39 -0.02 2.74 16 Total: -1.00 -75.35 352.04 1.50 -73.85 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -0.40 Total: 28.76 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 5.95 Total: 0.26 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -5.94 Total: -130.68 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.06 Total: -19.70 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.53 kcal Total: -75.35 1.50 -73.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091045005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.929 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds