Wall clock time and date at job start Fri Apr 10 2020 18:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34600 * 126.49428 * 2 1 4 4 Cl 1.73601 * 125.43434 * 0.02562 * 3 2 1 5 5 N 1.31016 * 109.12954 * 179.97438 * 3 2 1 6 6 C 1.33302 * 109.70692 * 359.75108 * 5 3 2 7 7 C 1.36676 * 107.82965 * 0.40350 * 6 5 3 8 8 C 1.46659 * 126.84327 * 179.86894 * 7 6 5 9 9 O 1.21700 * 120.00154 * 185.02043 * 8 7 6 10 10 N 1.34769 * 119.99900 * 5.02868 * 8 7 6 11 11 C 1.46510 * 119.99944 * 174.59691 * 10 8 7 12 12 C 1.53000 * 109.46959 * 179.97438 * 11 10 8 13 13 C 1.53785 * 113.61527 * 175.00101 * 12 11 10 14 14 C 1.53772 * 87.08127 * 140.06360 * 13 12 11 15 15 N 1.46504 * 113.61434 * 89.12016 * 14 13 12 16 16 C 1.36936 * 119.99887 * 156.53157 * 15 14 13 17 17 H 1.08003 * 120.00438 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99726 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00258 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99982 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47310 * 89.99302 * 20 18 16 22 22 H 1.48502 * 109.47165 * 209.99844 * 20 18 16 23 23 H 1.48503 * 109.47172 * 329.99430 * 20 18 16 24 24 C 1.53779 * 87.17662 * 334.52531 * 14 13 12 25 25 H 1.08999 * 109.46425 * 272.51853 * 1 2 3 26 26 H 1.09001 * 109.47180 * 32.50910 * 1 2 3 27 27 H 1.08994 * 109.47448 * 152.51727 * 1 2 3 28 28 H 1.08005 * 126.08767 * 180.24965 * 6 5 3 29 29 H 0.97003 * 120.00243 * 354.59418 * 10 8 7 30 30 H 1.08997 * 109.46625 * 59.99901 * 11 10 8 31 31 H 1.09001 * 109.47060 * 299.99835 * 11 10 8 32 32 H 1.09000 * 112.85458 * 43.80375 * 12 11 10 33 33 H 1.09004 * 113.61114 * 25.51261 * 13 12 11 34 34 H 1.08998 * 113.68939 * 254.62415 * 13 12 11 35 35 H 1.09000 * 113.61521 * 219.93449 * 14 13 12 36 36 H 0.96995 * 120.00177 * 336.52282 * 15 14 13 37 37 H 0.97003 * 120.00493 * 180.02562 * 19 18 16 38 38 H 1.08999 * 113.61471 * 140.02322 * 24 14 13 39 39 H 1.09002 * 113.61737 * 270.92688 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2656 1.0821 0.0000 4 17 1.7270 2.7324 0.0006 5 7 3.5160 0.6911 0.0006 6 6 3.5705 -0.6408 0.0064 7 6 2.2876 -1.1122 0.0005 8 6 1.8669 -2.5171 0.0010 9 8 0.6870 -2.7991 -0.0969 10 7 2.7868 -3.4960 0.1102 11 6 2.3599 -4.8924 0.2299 12 6 3.5910 -5.7945 0.3378 13 6 3.2512 -7.2729 0.5902 14 6 4.3851 -7.6193 -0.3891 15 7 5.6940 -7.7579 0.2541 16 6 6.6743 -8.5052 -0.3423 17 1 6.4824 -8.9928 -1.2867 18 6 7.9144 -8.6369 0.2674 19 7 8.1482 -8.0431 1.4185 20 14 9.2514 -9.6570 -0.5458 21 1 10.0601 -8.7904 -1.4403 22 1 10.1281 -10.2463 0.4978 23 1 8.6287 -10.7453 -1.3415 24 6 4.1545 -6.2385 -1.0255 25 1 -0.3632 0.0452 1.0267 26 1 -0.3633 0.8666 -0.5523 27 1 -0.3634 -0.9116 -0.4742 28 1 4.4685 -1.2408 0.0120 29 1 3.7315 -3.2760 0.1094 30 1 1.7810 -5.1720 -0.6502 31 1 1.7444 -5.0089 1.1219 32 1 4.3478 -5.3987 1.0150 33 1 2.2624 -7.5608 0.2328 34 1 3.4428 -7.5979 1.6127 35 1 4.1497 -8.4509 -1.0531 36 1 5.8664 -7.3202 1.1024 37 1 9.0148 -8.1348 1.8445 38 1 5.0756 -5.7277 -1.3061 39 1 3.4123 -6.2441 -1.8238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091143575.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:37 Heat of formation + Delta-G solvation = 53.308219 kcal Electronic energy + Delta-G solvation = -22660.398978 eV Core-core repulsion = 19052.159301 eV Total energy + Delta-G solvation = -3608.239676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.65233 -39.68307 -38.47313 -37.44694 -35.15423 -34.33765 -33.26307 -30.84519 -29.88963 -27.58766 -27.28374 -25.11385 -24.00906 -23.23131 -22.07414 -21.50834 -20.44823 -18.68936 -18.14876 -17.33151 -16.76912 -16.63130 -16.23645 -15.38106 -15.06220 -14.87250 -14.60395 -14.18930 -14.12449 -13.67579 -13.59666 -13.34445 -13.18974 -12.93954 -12.36982 -12.23895 -12.05243 -11.96555 -11.45038 -11.08304 -10.87680 -10.82766 -10.53927 -10.32086 -10.24710 -10.18410 -9.92827 -9.72258 -9.56051 -9.25502 -8.92571 -8.87909 -7.03143 -5.83316 -3.12541 0.76437 0.80334 2.22185 2.27186 3.00339 3.06507 3.40563 3.46121 3.47541 4.18824 4.29145 4.53520 4.55486 4.75126 4.88403 4.96249 4.98869 5.11565 5.16639 5.42134 5.50910 5.54893 5.63618 5.77873 5.88497 5.94482 6.03199 6.15871 6.23296 6.24900 6.32468 6.53488 6.70324 6.83662 6.99679 7.18711 7.31837 7.66767 7.91214 8.35819 9.46668 10.03680 10.37750 11.39047 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.002343 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.164075 B =11949.848760 C =12883.326508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.413 5.413 3 C 0.258 3.742 4 Cl 0.042 6.958 5 N -0.466 5.466 6 C 0.051 3.949 7 C -0.067 4.067 8 C 0.594 3.406 9 O -0.547 6.547 10 N -0.706 5.706 11 C 0.134 3.866 12 C -0.121 4.121 13 C -0.147 4.147 14 C 0.167 3.833 15 N -0.706 5.706 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.169 4.169 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.192 0.808 29 H 0.406 0.594 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.068 0.932 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.541 17.948 -2.202 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.097 5.097 3 C -0.028 4.028 4 Cl 0.069 6.931 5 N -0.188 5.188 6 C -0.103 4.103 7 C -0.184 4.184 8 C 0.379 3.621 9 O -0.427 6.427 10 N -0.356 5.356 11 C 0.011 3.989 12 C -0.140 4.140 13 C -0.186 4.186 14 C 0.055 3.945 15 N -0.345 5.345 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.210 4.210 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.133 0.867 28 H 0.209 0.791 29 H 0.242 0.758 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.836 18.256 -2.339 24.944 hybrid contribution 0.518 -0.373 -0.076 0.643 sum -16.318 17.884 -2.415 24.330 Atomic orbital electron populations 1.22463 0.74520 1.06459 1.04817 1.45041 1.08575 1.04409 1.51663 1.23242 0.86680 0.84520 1.08391 1.98433 1.88674 1.08900 1.97076 1.70084 1.16052 1.12704 1.19912 1.22783 0.95782 0.90043 1.01714 1.20850 0.91040 0.88644 1.17880 1.16618 0.85743 0.82789 0.76910 1.90786 1.17016 1.83856 1.51003 1.45716 1.09731 1.06865 1.73298 1.21579 0.97403 0.78025 1.01873 1.22787 0.96129 0.94842 1.00193 1.23421 0.99729 0.93994 1.01471 1.21046 0.86155 0.94095 0.93216 1.42168 1.08055 1.59515 1.24713 1.19278 0.91667 1.23148 1.03306 0.90996 1.24763 0.97967 1.00918 0.97183 1.69653 1.23256 1.47789 1.17321 0.86175 0.81950 0.79781 0.78186 1.21646 1.21749 1.20706 1.23950 1.00301 1.02035 0.94724 0.89560 0.89217 0.86666 0.79075 0.75823 0.91099 0.91475 0.88654 0.90414 0.91238 0.92035 0.78101 0.93404 0.91336 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.61 59.85 0.63 1.08 16 2 N -0.41 -4.30 3.18 -118.36 -0.38 -4.68 16 3 C 0.26 2.80 8.48 -90.35 -0.77 2.03 16 4 Cl 0.04 0.34 28.79 -51.86 -1.49 -1.15 16 5 N -0.47 -5.73 11.21 -11.48 -0.13 -5.85 16 6 C 0.05 0.55 11.37 -17.48 -0.20 0.36 16 7 C -0.07 -0.76 6.91 -82.10 -0.57 -1.33 16 8 C 0.59 7.26 7.78 -12.87 -0.10 7.16 16 9 O -0.55 -7.94 14.82 5.19 0.08 -7.87 16 10 N -0.71 -7.76 5.54 -61.62 -0.34 -8.10 16 11 C 0.13 1.59 5.52 -4.04 -0.02 1.57 16 12 C -0.12 -1.64 3.64 -89.66 -0.33 -1.97 16 13 C -0.15 -2.18 7.38 -25.92 -0.19 -2.37 16 14 C 0.17 3.10 4.55 -67.12 -0.31 2.79 16 15 N -0.71 -16.79 5.31 -52.64 -0.28 -17.07 16 16 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 20 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.17 -2.62 7.45 -25.78 -0.19 -2.81 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.47 7.86 -51.93 -0.41 0.06 16 27 H 0.11 1.01 6.27 -51.93 -0.33 0.69 16 28 H 0.19 1.52 7.46 -52.48 -0.39 1.13 16 29 H 0.41 3.80 7.41 -40.82 -0.30 3.50 16 30 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 36 H 0.38 9.68 7.90 -40.82 -0.32 9.36 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 0.95 7.91 -51.93 -0.41 0.54 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -31.95 347.67 -8.95 -40.90 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.07 Total: 8.95 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -2.28 Total: -0.60 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.40 Total: -62.32 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.08 Total: -7.87 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.49 Total: -1.15 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.95 -8.95 -40.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091143575.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.208 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds