Wall clock time and date at job start Fri Apr 10 2020 18:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34600 * 126.49428 * 2 1 4 4 Cl 1.73601 * 125.43434 * 0.02562 * 3 2 1 5 5 N 1.31016 * 109.12954 * 179.97438 * 3 2 1 6 6 C 1.33302 * 109.70692 * 359.75108 * 5 3 2 7 7 C 1.36676 * 107.82965 * 0.40350 * 6 5 3 8 8 C 1.46659 * 126.84327 * 179.86894 * 7 6 5 9 9 O 1.21700 * 120.00154 * 185.02043 * 8 7 6 10 10 N 1.34769 * 119.99900 * 5.02868 * 8 7 6 11 11 C 1.46510 * 119.99944 * 174.59691 * 10 8 7 12 12 C 1.53000 * 109.46959 * 179.97438 * 11 10 8 13 13 C 1.53785 * 113.61527 * 175.00101 * 12 11 10 14 14 C 1.53772 * 87.08127 * 140.06360 * 13 12 11 15 15 N 1.46504 * 113.61434 * 89.12016 * 14 13 12 16 16 C 1.36936 * 119.99887 * 156.53157 * 15 14 13 17 17 H 1.08003 * 120.00438 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99726 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00258 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99982 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47310 * 89.99302 * 20 18 16 22 22 H 1.48502 * 109.47165 * 209.99844 * 20 18 16 23 23 H 1.48503 * 109.47172 * 329.99430 * 20 18 16 24 24 C 1.53779 * 87.17662 * 334.52531 * 14 13 12 25 25 H 1.08999 * 109.46425 * 272.51853 * 1 2 3 26 26 H 1.09001 * 109.47180 * 32.50910 * 1 2 3 27 27 H 1.08994 * 109.47448 * 152.51727 * 1 2 3 28 28 H 1.08005 * 126.08767 * 180.24965 * 6 5 3 29 29 H 0.97003 * 120.00243 * 354.59418 * 10 8 7 30 30 H 1.08997 * 109.46625 * 59.99901 * 11 10 8 31 31 H 1.09001 * 109.47060 * 299.99835 * 11 10 8 32 32 H 1.09000 * 112.85458 * 43.80375 * 12 11 10 33 33 H 1.09004 * 113.61114 * 25.51261 * 13 12 11 34 34 H 1.08998 * 113.68939 * 254.62415 * 13 12 11 35 35 H 1.09000 * 113.61521 * 219.93449 * 14 13 12 36 36 H 0.96995 * 120.00177 * 336.52282 * 15 14 13 37 37 H 0.97003 * 120.00493 * 180.02562 * 19 18 16 38 38 H 1.08999 * 113.61471 * 140.02322 * 24 14 13 39 39 H 1.09002 * 113.61737 * 270.92688 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2656 1.0821 0.0000 4 17 1.7270 2.7324 0.0006 5 7 3.5160 0.6911 0.0006 6 6 3.5705 -0.6408 0.0064 7 6 2.2876 -1.1122 0.0005 8 6 1.8669 -2.5171 0.0010 9 8 0.6870 -2.7991 -0.0969 10 7 2.7868 -3.4960 0.1102 11 6 2.3599 -4.8924 0.2299 12 6 3.5910 -5.7945 0.3378 13 6 3.2512 -7.2729 0.5902 14 6 4.3851 -7.6193 -0.3891 15 7 5.6940 -7.7579 0.2541 16 6 6.6743 -8.5052 -0.3423 17 1 6.4824 -8.9928 -1.2867 18 6 7.9144 -8.6369 0.2674 19 7 8.1482 -8.0431 1.4185 20 14 9.2514 -9.6570 -0.5458 21 1 10.0601 -8.7904 -1.4403 22 1 10.1281 -10.2463 0.4978 23 1 8.6287 -10.7453 -1.3415 24 6 4.1545 -6.2385 -1.0255 25 1 -0.3632 0.0452 1.0267 26 1 -0.3633 0.8666 -0.5523 27 1 -0.3634 -0.9116 -0.4742 28 1 4.4685 -1.2408 0.0120 29 1 3.7315 -3.2760 0.1094 30 1 1.7810 -5.1720 -0.6502 31 1 1.7444 -5.0089 1.1219 32 1 4.3478 -5.3987 1.0150 33 1 2.2624 -7.5608 0.2328 34 1 3.4428 -7.5979 1.6127 35 1 4.1497 -8.4509 -1.0531 36 1 5.8664 -7.3202 1.1024 37 1 9.0148 -8.1348 1.8445 38 1 5.0756 -5.7277 -1.3061 39 1 3.4123 -6.2441 -1.8238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091143575.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:36 Heat of formation + Delta-G solvation = 32.294658 kcal Electronic energy + Delta-G solvation = -22661.310194 eV Core-core repulsion = 19052.159301 eV Total energy + Delta-G solvation = -3609.150893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.45532 -40.72843 -39.71589 -38.16119 -36.20531 -35.36884 -34.86046 -32.24767 -31.22949 -28.48880 -28.24368 -26.39413 -25.74721 -24.35796 -23.12633 -22.46905 -21.37223 -19.88075 -19.35233 -19.01484 -17.64402 -17.44117 -17.23733 -16.67112 -16.30432 -15.87547 -15.75105 -15.65959 -15.25508 -14.75115 -14.68628 -14.52853 -14.24452 -13.85855 -13.69494 -13.24672 -12.98807 -12.91052 -12.88252 -12.72797 -12.59493 -12.14652 -12.04668 -11.74617 -11.47421 -11.43735 -11.14158 -11.02513 -10.89724 -10.76679 -10.21515 -9.71519 -8.96514 -7.93229 -5.20825 -0.03314 0.01106 1.42344 1.47018 1.49965 1.50596 1.58945 2.11461 2.21003 2.57746 3.37486 3.40326 3.63880 3.71932 3.76293 3.81860 3.91502 4.16909 4.18534 4.20975 4.36929 4.45068 4.52628 4.72558 4.77246 4.84431 4.97873 5.04243 5.13676 5.17579 5.26454 5.39687 5.48669 5.49453 5.57174 5.70793 6.30886 6.32930 6.47740 7.00387 7.36121 8.14185 8.35798 9.29986 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.002343 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.164075 B =11949.848760 C =12883.326508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.414 5.414 3 C 0.255 3.745 4 Cl 0.062 6.938 5 N -0.496 5.496 6 C 0.053 3.947 7 C -0.082 4.082 8 C 0.597 3.403 9 O -0.572 6.572 10 N -0.700 5.700 11 C 0.144 3.856 12 C -0.102 4.102 13 C -0.133 4.133 14 C 0.141 3.859 15 N -0.720 5.720 16 C -0.240 4.240 17 H 0.076 0.924 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.970 3.030 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.270 1.270 24 C -0.154 4.154 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.213 0.787 29 H 0.415 0.585 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.375 0.625 37 H 0.251 0.749 38 H 0.049 0.951 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.790 18.553 -2.990 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.098 5.098 3 C -0.032 4.032 4 Cl 0.090 6.910 5 N -0.217 5.217 6 C -0.101 4.101 7 C -0.199 4.199 8 C 0.384 3.616 9 O -0.453 6.453 10 N -0.350 5.350 11 C 0.021 3.979 12 C -0.121 4.121 13 C -0.172 4.172 14 C 0.032 3.968 15 N -0.358 5.358 16 C -0.372 4.372 17 H 0.094 0.906 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.799 3.201 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.195 1.195 24 C -0.195 4.195 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.122 0.878 28 H 0.229 0.771 29 H 0.251 0.749 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.207 0.793 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.133 18.864 -3.165 26.357 hybrid contribution 0.802 -0.511 0.128 0.960 sum -17.331 18.353 -3.037 25.425 Atomic orbital electron populations 1.22636 0.73078 1.06906 1.05886 1.45226 1.09492 1.04051 1.51013 1.23489 0.86617 0.85491 1.07613 1.98439 1.88413 1.07258 1.96936 1.70085 1.17053 1.13439 1.21164 1.23183 0.96447 0.89869 1.00640 1.20791 0.91479 0.88503 1.19144 1.16672 0.85381 0.83183 0.76380 1.90775 1.17981 1.84248 1.52337 1.45626 1.10131 1.06436 1.72816 1.21407 0.96215 0.77999 1.02279 1.22556 0.96430 0.94643 0.98498 1.23321 0.99516 0.94431 0.99912 1.21398 0.85189 0.95550 0.94709 1.42298 1.09551 1.59368 1.24603 1.19650 0.92312 1.22172 1.03058 0.90644 1.25513 1.00252 1.02880 0.98074 1.69797 1.23386 1.49845 1.18878 0.85191 0.79268 0.78532 0.77083 1.21508 1.22406 1.19523 1.23771 1.00220 0.99260 0.96233 0.88354 0.86940 0.87841 0.77061 0.74860 0.90713 0.91045 0.89730 0.87469 0.92316 0.92479 0.79296 0.94056 0.93248 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 10.61 127.77 1.36 2.11 16 2 N -0.41 -8.10 3.18 -528.38 -1.68 -9.78 16 3 C 0.25 5.20 8.48 180.25 1.53 6.73 16 4 Cl 0.06 0.93 28.79 -2.72 -0.08 0.85 16 5 N -0.50 -11.66 11.21 -190.25 -2.13 -13.79 16 6 C 0.05 1.09 11.37 84.10 0.96 2.04 16 7 C -0.08 -1.76 6.91 39.95 0.28 -1.48 16 8 C 0.60 13.75 7.78 86.44 0.67 14.42 16 9 O -0.57 -15.84 14.82 -4.35 -0.06 -15.91 16 10 N -0.70 -14.13 5.54 -467.08 -2.59 -16.72 16 11 C 0.14 3.08 5.52 86.38 0.48 3.56 16 12 C -0.10 -2.61 3.64 -10.17 -0.04 -2.64 16 13 C -0.13 -3.70 7.38 31.12 0.23 -3.47 16 14 C 0.14 5.11 4.55 45.51 0.21 5.31 16 15 N -0.72 -34.42 5.31 -320.45 -1.70 -36.12 16 16 C -0.24 -12.91 9.97 84.03 0.84 -12.07 16 17 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 18 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 19 N -0.97 -57.84 13.06 21.65 0.28 -57.56 16 20 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C -0.15 -4.53 7.45 31.21 0.23 -4.30 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.11 0.96 7.86 -2.39 -0.02 0.94 16 27 H 0.10 1.72 6.27 -2.39 -0.01 1.70 16 28 H 0.21 3.07 7.46 -2.91 -0.02 3.05 16 29 H 0.41 7.07 7.41 -92.71 -0.69 6.38 16 30 H 0.07 1.61 7.85 -2.39 -0.02 1.59 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.11 2.39 8.10 -2.38 -0.02 2.37 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 2.09 8.11 -2.39 -0.02 2.07 16 36 H 0.37 19.18 7.90 -92.71 -0.73 18.45 16 37 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 39 H 0.09 2.29 7.91 -2.39 -0.02 2.27 16 Total: -1.00 -68.44 347.67 0.95 -67.49 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.32 Total: 27.77 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 7.20 Total: 6.47 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -7.82 Total: -133.97 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.06 Total: -15.91 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 17 Polarization: 0.93 SS G_CDS: -0.08 Total: 0.85 kcal Total: -68.44 0.95 -67.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091143575.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.785 kcal (2) G-P(sol) polarization free energy of solvation -68.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds