Wall clock time and date at job start Fri Apr 10 2020 18:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86808 * 119.99911 * 2 1 4 4 H 1.48502 * 109.47036 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46709 * 299.99521 * 3 2 1 6 6 H 1.48493 * 109.47324 * 59.99720 * 3 2 1 7 7 C 1.38798 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00562 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99976 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00286 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99817 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00322 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47246 * 180.02562 * 14 13 11 16 16 H 1.08992 * 109.47188 * 60.00457 * 15 14 13 17 17 O 1.42903 * 109.47030 * 300.00129 * 15 14 13 18 18 C 1.53006 * 109.46811 * 180.02562 * 15 14 13 19 19 N 1.46500 * 109.46998 * 184.99974 * 18 15 14 20 20 C 1.38402 * 120.00428 * 180.02562 * 19 18 15 21 21 N 1.32500 * 119.21078 * 359.73127 * 20 19 18 22 22 C 1.32277 * 120.73440 * 179.71632 * 21 20 19 23 23 C 1.38606 * 119.19996 * 0.54622 * 22 21 20 24 24 C 1.38602 * 118.55618 * 359.72797 * 23 22 21 25 25 N 1.32273 * 119.19916 * 0.02562 * 24 23 22 26 26 H 0.97003 * 119.99820 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46766 * 60.00639 * 10 9 7 28 28 H 1.08997 * 109.46990 * 300.00115 * 10 9 7 29 29 H 0.97010 * 119.99917 * 0.02562 * 13 11 10 30 30 H 1.09009 * 109.46918 * 60.00506 * 14 13 11 31 31 H 1.09001 * 109.47282 * 300.00875 * 14 13 11 32 32 H 0.96698 * 113.99763 * 300.00194 * 17 15 14 33 33 H 1.08993 * 109.46955 * 305.00200 * 18 15 14 34 34 H 1.09000 * 109.47050 * 65.00029 * 18 15 14 35 35 H 0.97010 * 119.99909 * 359.97438 * 19 18 15 36 36 H 1.08005 * 120.39860 * 180.25093 * 22 21 20 37 37 H 1.08001 * 120.72028 * 179.74857 * 23 22 21 38 38 H 1.08005 * 120.40134 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0008 14 6 2.3304 -7.7150 0.0008 15 6 3.5024 -8.6985 0.0009 16 1 4.1109 -8.5384 0.8909 17 8 4.3004 -8.4886 -1.1658 18 6 2.9658 -10.1314 0.0003 19 7 4.0831 -11.0713 0.1208 20 6 3.8420 -12.4340 0.1419 21 7 2.5941 -12.8712 0.0574 22 6 2.3296 -14.1672 0.0691 23 6 3.3754 -15.0698 0.1825 24 6 4.6680 -14.5780 0.2745 25 7 4.8639 -13.2700 0.2518 26 1 -0.4850 0.8401 -0.0004 27 1 3.1244 -3.7313 0.8906 28 1 3.1245 -3.7313 -0.8894 29 1 3.8009 -6.1835 0.0004 30 1 1.7215 -7.8751 -0.8891 31 1 1.7220 -7.8752 0.8909 32 1 3.8225 -8.6144 -1.9970 33 1 2.2861 -10.2651 0.8418 34 1 2.4320 -10.3190 -0.9313 35 1 4.9921 -10.7385 0.1851 36 1 1.3107 -14.5178 -0.0041 37 1 3.1872 -16.1331 0.1986 38 1 5.5052 -15.2545 0.3635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105755325.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:06 Heat of formation + Delta-G solvation = -31.784065 kcal Electronic energy + Delta-G solvation = -21716.241956 eV Core-core repulsion = 18106.356108 eV Total energy + Delta-G solvation = -3609.885848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.23589 -39.52321 -38.24061 -35.79977 -34.17562 -33.98575 -32.43342 -31.77910 -30.31835 -28.73560 -25.82822 -25.39566 -24.76627 -23.13630 -22.24744 -20.36164 -18.61057 -18.10753 -17.80520 -16.98584 -16.66669 -16.34833 -16.07775 -15.51820 -15.35133 -14.91155 -14.83101 -14.80766 -14.63629 -13.92460 -13.82523 -13.75033 -13.38918 -13.08048 -12.78163 -12.56464 -11.77876 -11.51556 -11.31514 -11.19003 -11.07233 -11.02399 -10.88137 -10.78225 -10.60927 -9.81038 -9.47835 -9.45470 -9.08596 -8.96263 -8.49699 -8.24168 -6.50746 -6.22317 -3.92876 0.80605 0.83425 2.38069 3.01205 3.06010 3.21515 3.27746 3.32278 3.55808 3.63205 3.83399 3.96271 4.19903 4.24150 4.33115 4.36308 4.55218 4.60376 4.86234 4.86979 5.12792 5.13718 5.15303 5.26715 5.40949 5.48615 5.62189 5.73169 5.85780 5.88727 6.13900 6.38733 6.52830 6.70099 7.05712 7.15768 7.59668 7.66816 7.96009 8.35154 8.57075 9.23300 10.85174 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.053696 B = 0.001810 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.325541 B =15468.528758 C =15874.046306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.733 5.733 14 C 0.094 3.906 15 C 0.085 3.915 16 H 0.113 0.887 17 O -0.554 6.554 18 C 0.109 3.891 19 N -0.691 5.691 20 C 0.563 3.437 21 N -0.569 5.569 22 C 0.193 3.807 23 C -0.297 4.297 24 C 0.192 3.808 25 N -0.573 5.573 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.403 0.597 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.381 0.619 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.418 0.582 36 H 0.167 0.833 37 H 0.143 0.857 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.671 -29.331 -0.145 30.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.389 5.389 14 C -0.031 4.031 15 C 0.025 3.975 16 H 0.131 0.869 17 O -0.360 6.360 18 C -0.016 4.016 19 N -0.328 5.328 20 C 0.206 3.794 21 N -0.292 5.292 22 C 0.025 3.975 23 C -0.323 4.323 24 C 0.024 3.976 25 N -0.295 5.295 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.238 0.762 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.230 0.770 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.256 0.744 36 H 0.184 0.816 37 H 0.161 0.839 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.968 -28.278 0.273 29.381 hybrid contribution 2.096 0.299 -0.323 2.142 sum 10.065 -27.979 -0.050 29.734 Atomic orbital electron populations 1.70028 1.05956 1.27352 1.46960 1.24996 0.95030 0.99049 0.94526 0.86110 0.79595 0.81854 0.77899 1.19609 1.20563 1.20562 1.22914 0.94969 0.91618 1.58837 0.90837 1.85390 1.04944 0.96388 1.96725 1.23525 1.06577 0.95220 1.05029 1.20335 0.86459 0.86304 0.75064 1.90708 1.15383 1.85605 1.47557 1.45841 1.10330 1.04740 1.77968 1.21785 0.95648 0.82025 1.03662 1.22413 0.93009 0.91768 0.90325 0.86892 1.86599 1.40519 1.92955 1.15950 1.21921 0.88762 0.87276 1.03670 1.43967 1.10520 0.99979 1.78350 1.19339 0.84992 0.86988 0.88039 1.67966 1.21034 1.17932 1.22287 1.22966 1.00066 0.87124 0.87347 1.22541 0.95109 1.02497 1.12130 1.22925 0.96714 0.90312 0.87602 1.67902 1.34750 1.04617 1.22238 0.92232 0.89181 0.89121 0.76236 0.90887 0.90318 0.77045 0.90032 0.90627 0.74377 0.81612 0.83901 0.81664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.70 7.85 -10.98 -0.09 9.61 16 12 O -0.52 -11.54 15.86 5.56 0.09 -11.45 16 13 N -0.73 -9.25 5.45 -60.29 -0.33 -9.58 16 14 C 0.09 0.94 5.34 -4.04 -0.02 0.92 16 15 C 0.08 0.60 3.09 -26.73 -0.08 0.52 16 16 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 17 O -0.55 -4.17 13.03 -35.23 -0.46 -4.63 16 18 C 0.11 0.79 5.29 -4.04 -0.02 0.77 16 19 N -0.69 -5.75 5.65 -62.31 -0.35 -6.10 16 20 C 0.56 5.63 8.43 -322.81 -2.72 2.91 16 21 N -0.57 -5.50 9.59 -13.93 -0.13 -5.63 16 22 C 0.19 1.33 11.30 -17.22 -0.19 1.14 16 23 C -0.30 -1.66 10.16 -39.31 -0.40 -2.06 16 24 C 0.19 1.31 11.30 -17.23 -0.19 1.11 16 25 N -0.57 -5.54 10.46 -13.93 -0.15 -5.69 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 28 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 29 H 0.40 4.23 8.35 -40.82 -0.34 3.89 16 30 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.38 2.07 9.04 45.56 0.41 2.48 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.42 3.27 8.59 -40.82 -0.35 2.92 16 36 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 38 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -37.19 351.86 -9.88 -47.07 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.05 Total: 4.49 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -3.30 Total: -0.90 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.23 Total: -52.42 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.37 Total: -16.09 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.19 -9.88 -47.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105755325.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.289 kcal (2) G-P(sol) polarization free energy of solvation -37.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds