Wall clock time and date at job start Fri Apr 10 2020 18:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86808 * 119.99911 * 2 1 4 4 H 1.48502 * 109.47036 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46709 * 299.99521 * 3 2 1 6 6 H 1.48493 * 109.47324 * 59.99720 * 3 2 1 7 7 C 1.38798 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00562 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99976 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00286 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99817 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00322 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47246 * 180.02562 * 14 13 11 16 16 H 1.08992 * 109.47188 * 60.00457 * 15 14 13 17 17 O 1.42903 * 109.47030 * 300.00129 * 15 14 13 18 18 C 1.53006 * 109.46811 * 180.02562 * 15 14 13 19 19 N 1.46500 * 109.46998 * 184.99974 * 18 15 14 20 20 C 1.38402 * 120.00428 * 180.02562 * 19 18 15 21 21 N 1.32500 * 119.21078 * 359.73127 * 20 19 18 22 22 C 1.32277 * 120.73440 * 179.71632 * 21 20 19 23 23 C 1.38606 * 119.19996 * 0.54622 * 22 21 20 24 24 C 1.38602 * 118.55618 * 359.72797 * 23 22 21 25 25 N 1.32273 * 119.19916 * 0.02562 * 24 23 22 26 26 H 0.97003 * 119.99820 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46766 * 60.00639 * 10 9 7 28 28 H 1.08997 * 109.46990 * 300.00115 * 10 9 7 29 29 H 0.97010 * 119.99917 * 0.02562 * 13 11 10 30 30 H 1.09009 * 109.46918 * 60.00506 * 14 13 11 31 31 H 1.09001 * 109.47282 * 300.00875 * 14 13 11 32 32 H 0.96698 * 113.99763 * 300.00194 * 17 15 14 33 33 H 1.08993 * 109.46955 * 305.00200 * 18 15 14 34 34 H 1.09000 * 109.47050 * 65.00029 * 18 15 14 35 35 H 0.97010 * 119.99909 * 359.97438 * 19 18 15 36 36 H 1.08005 * 120.39860 * 180.25093 * 22 21 20 37 37 H 1.08001 * 120.72028 * 179.74857 * 23 22 21 38 38 H 1.08005 * 120.40134 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0008 14 6 2.3304 -7.7150 0.0008 15 6 3.5024 -8.6985 0.0009 16 1 4.1109 -8.5384 0.8909 17 8 4.3004 -8.4886 -1.1658 18 6 2.9658 -10.1314 0.0003 19 7 4.0831 -11.0713 0.1208 20 6 3.8420 -12.4340 0.1419 21 7 2.5941 -12.8712 0.0574 22 6 2.3296 -14.1672 0.0691 23 6 3.3754 -15.0698 0.1825 24 6 4.6680 -14.5780 0.2745 25 7 4.8639 -13.2700 0.2518 26 1 -0.4850 0.8401 -0.0004 27 1 3.1244 -3.7313 0.8906 28 1 3.1245 -3.7313 -0.8894 29 1 3.8009 -6.1835 0.0004 30 1 1.7215 -7.8751 -0.8891 31 1 1.7220 -7.8752 0.8909 32 1 3.8225 -8.6144 -1.9970 33 1 2.2861 -10.2651 0.8418 34 1 2.4320 -10.3190 -0.9313 35 1 4.9921 -10.7385 0.1851 36 1 1.3107 -14.5178 -0.0041 37 1 3.1872 -16.1331 0.1986 38 1 5.5052 -15.2545 0.3635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105755325.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:05 Heat of formation + Delta-G solvation = -61.405748 kcal Electronic energy + Delta-G solvation = -21717.526449 eV Core-core repulsion = 18106.356108 eV Total energy + Delta-G solvation = -3611.170341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.78467 -40.74292 -39.11737 -36.42980 -35.30029 -34.58534 -34.55030 -32.46371 -31.42180 -29.79576 -27.69840 -26.47952 -25.34704 -23.74954 -22.92106 -21.71668 -19.88557 -19.14613 -18.65412 -17.92391 -17.63162 -17.40164 -16.88420 -16.66650 -16.43382 -16.39674 -15.92453 -15.69875 -15.42775 -15.21236 -14.75307 -14.46789 -14.37898 -14.22482 -14.15233 -13.69673 -13.16152 -13.15339 -12.90763 -12.60339 -12.14263 -11.85010 -11.79246 -11.72890 -11.43074 -11.30389 -11.15993 -10.93898 -10.27621 -10.15553 -10.05408 -9.05742 -8.66675 -8.35070 -6.12942 0.28919 0.30677 1.26242 1.41445 1.46129 1.57419 1.60357 1.81227 2.26361 2.32361 2.99251 3.00090 3.28484 3.32494 3.37465 3.61191 3.70127 3.89501 3.94386 3.96512 4.06845 4.29521 4.42510 4.42947 4.51991 4.52686 4.67285 4.71897 4.95421 4.97521 5.36010 5.42267 5.43112 5.83582 6.16689 6.20016 6.47116 6.49416 6.65954 7.06567 7.22831 7.38785 8.74387 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.053696 B = 0.001810 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.325541 B =15468.528758 C =15874.046306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.707 5.707 14 C 0.093 3.907 15 C 0.107 3.893 16 H 0.123 0.877 17 O -0.561 6.561 18 C 0.119 3.881 19 N -0.691 5.691 20 C 0.541 3.459 21 N -0.594 5.594 22 C 0.177 3.823 23 C -0.285 4.285 24 C 0.179 3.821 25 N -0.598 5.598 26 H 0.271 0.729 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.417 0.583 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.391 0.609 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.419 0.581 36 H 0.193 0.807 37 H 0.176 0.824 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.813 -30.595 -0.159 32.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.282 4.282 11 C 0.320 3.680 12 O -0.444 6.444 13 N -0.361 5.361 14 C -0.032 4.032 15 C 0.047 3.953 16 H 0.141 0.859 17 O -0.368 6.368 18 C -0.007 4.007 19 N -0.329 5.329 20 C 0.184 3.816 21 N -0.318 5.318 22 C 0.010 3.990 23 C -0.310 4.310 24 C 0.012 3.988 25 N -0.321 5.321 26 H 0.080 0.920 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.255 0.745 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.241 0.759 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.257 0.743 36 H 0.209 0.791 37 H 0.194 0.806 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 10.159 -29.606 0.251 31.302 hybrid contribution 1.469 0.461 -0.329 1.575 sum 11.628 -29.145 -0.079 31.379 Atomic orbital electron populations 1.70187 1.07957 1.28552 1.48063 1.26124 0.95969 1.03310 0.93736 0.84902 0.78591 0.76341 0.78085 1.18083 1.19922 1.19913 1.23248 0.95369 0.92044 1.58784 0.89928 1.85549 1.10549 0.99229 1.97049 1.23374 1.03548 0.94438 1.06799 1.20026 0.86172 0.86646 0.75137 1.90699 1.17354 1.86084 1.50249 1.45562 1.10423 1.04676 1.75434 1.21958 0.96913 0.80821 1.03533 1.22165 0.91731 0.90675 0.90717 0.85924 1.86588 1.40841 1.92869 1.16524 1.21780 0.88486 0.87066 1.03343 1.43931 1.10602 0.99772 1.78575 1.19591 0.85437 0.87537 0.89022 1.67982 1.21041 1.19492 1.23292 1.23559 1.01853 0.86628 0.86919 1.22900 0.94196 1.03955 1.09977 1.23555 0.98416 0.89862 0.86961 1.67928 1.35042 1.05917 1.23246 0.91982 0.87254 0.87268 0.74521 0.91018 0.90627 0.75898 0.90545 0.90861 0.74308 0.79054 0.80635 0.78799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.00 13.22 21.65 0.29 -55.72 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -31.27 9.50 67.95 0.65 -30.62 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 11 C 0.53 19.16 7.85 87.66 0.69 19.85 16 12 O -0.57 -25.60 15.86 -3.04 -0.05 -25.65 16 13 N -0.71 -16.63 5.45 -463.05 -2.52 -19.15 16 14 C 0.09 1.73 5.34 86.38 0.46 2.19 16 15 C 0.11 1.34 3.09 30.60 0.09 1.43 16 16 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 17 O -0.56 -7.34 13.03 -148.98 -1.94 -9.28 16 18 C 0.12 1.62 5.29 86.38 0.46 2.08 16 19 N -0.69 -11.10 5.65 -351.04 -1.98 -13.09 16 20 C 0.54 10.59 8.43 261.49 2.20 12.79 16 21 N -0.59 -11.12 9.59 -197.98 -1.90 -13.02 16 22 C 0.18 2.18 11.30 84.71 0.96 3.14 16 23 C -0.29 -2.55 10.16 22.44 0.23 -2.32 16 24 C 0.18 2.12 11.30 84.71 0.96 3.08 16 25 N -0.60 -11.12 10.46 -197.99 -2.07 -13.19 16 26 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 27 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 28 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 29 H 0.42 7.64 8.35 -92.70 -0.77 6.86 16 30 H 0.07 1.42 8.14 -2.38 -0.02 1.41 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.39 3.54 9.04 -74.06 -0.67 2.87 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.42 6.25 8.59 -92.70 -0.80 5.46 16 36 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.18 0.32 8.06 -2.91 -0.02 0.29 16 38 H 0.20 0.90 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -82.96 351.86 -2.84 -85.80 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -1.12 Total: 18.96 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 7.60 Total: 8.17 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -8.19 Total: -114.16 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.99 Total: -34.92 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -82.96 -2.84 -85.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105755325.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.392 kcal (2) G-P(sol) polarization free energy of solvation -82.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds