Wall clock time and date at job start Fri Apr 10 2020 18:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.55410 * 2 1 4 4 N 1.46499 * 109.47354 * 304.87420 * 3 2 1 5 5 C 1.34767 * 120.00065 * 179.97438 * 4 3 2 6 6 O 1.21609 * 119.99815 * 359.97438 * 5 4 3 7 7 C 1.47448 * 120.00134 * 180.02562 * 5 4 3 8 8 C 1.37985 * 124.15510 * 179.97438 * 7 5 4 9 9 S 1.72103 * 104.03108 * 179.97438 * 8 7 5 10 10 N 1.56404 * 96.15682 * 0.02562 * 9 8 7 11 11 N 1.27416 * 109.87560 * 359.72209 * 10 9 8 12 12 C 1.53292 * 109.51267 * 120.12825 * 2 1 3 13 13 N 1.47165 * 108.41376 * 67.64295 * 12 2 1 14 14 C 1.36935 * 120.99578 * 230.54471 * 13 12 2 15 15 H 1.07992 * 120.00186 * 153.32389 * 14 13 12 16 16 C 1.38816 * 119.99602 * 333.33361 * 14 13 12 17 17 N 1.31616 * 120.00208 * 343.52858 * 16 14 13 18 18 Si 1.86797 * 119.99898 * 163.53345 * 16 14 13 19 19 H 1.48500 * 109.47409 * 59.99733 * 18 16 14 20 20 H 1.48501 * 109.46973 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47195 * 299.99374 * 18 16 14 22 22 C 1.47151 * 118.02621 * 50.46989 * 13 12 2 23 23 C 1.53294 * 108.41779 * 309.52979 * 22 13 12 24 24 O 1.42966 * 109.22198 * 52.28429 * 23 22 13 25 25 H 1.08997 * 109.47587 * 180.12462 * 1 2 3 26 26 H 1.09005 * 109.47135 * 300.12598 * 1 2 3 27 27 H 1.09003 * 109.47554 * 60.12280 * 1 2 3 28 28 H 1.09003 * 109.46779 * 64.87711 * 3 2 1 29 29 H 1.08998 * 109.46843 * 184.87144 * 3 2 1 30 30 H 0.97002 * 119.99524 * 359.97438 * 4 3 2 31 31 H 1.08004 * 127.98521 * 359.96517 * 8 7 5 32 32 H 1.09007 * 109.68283 * 187.34438 * 12 2 1 33 33 H 1.09002 * 109.68326 * 307.89778 * 12 2 1 34 34 H 0.96998 * 120.00577 * 180.02562 * 17 16 14 35 35 H 1.09006 * 109.68282 * 189.78626 * 22 13 12 36 36 H 1.09005 * 109.68198 * 69.27128 * 22 13 12 37 37 H 1.08997 * 109.51621 * 172.20381 * 23 22 13 38 38 H 1.08999 * 109.51217 * 292.30900 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.4613 2.1664 -1.1331 5 6 1.7717 3.4622 -1.3348 6 8 2.5335 4.0302 -0.5759 7 6 1.1868 4.1916 -2.4750 8 6 1.4443 5.5166 -2.7613 9 16 0.5110 5.8274 -4.1734 10 7 -0.0904 4.3889 -4.2970 11 7 0.3514 3.6524 -3.3558 12 6 2.0420 -0.7252 1.2497 13 7 1.6966 -2.1511 1.1339 14 6 1.0619 -2.8080 2.1541 15 1 0.4435 -3.6673 1.9409 16 6 1.2134 -2.3693 3.4624 17 7 2.1955 -1.5497 3.7721 18 14 0.0232 -2.9422 4.7832 19 1 0.0797 -4.4221 4.8923 20 1 0.3996 -2.3356 6.0854 21 1 -1.3554 -2.5247 4.4222 22 6 2.0521 -2.8497 -0.1115 23 6 1.5396 -2.0210 -1.2949 24 8 2.0075 -0.6763 -1.1656 25 1 -0.3634 -1.0276 0.0022 26 1 -0.3634 0.5158 0.8889 27 1 -0.3634 0.5119 -0.8911 28 1 1.7525 1.9302 0.9305 29 1 3.1285 1.4414 -0.0873 30 1 0.8534 1.7133 -1.7382 31 1 2.0838 6.2008 -2.2233 32 1 3.1241 -0.6148 1.3208 33 1 1.5704 -0.3042 2.1376 34 1 2.3016 -1.2434 4.6863 35 1 1.5871 -3.8356 -0.1249 36 1 3.1351 -2.9537 -0.1778 37 1 1.9113 -2.4477 -2.2264 38 1 0.4496 -2.0291 -1.3001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108101682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:26 Heat of formation + Delta-G solvation = 23.430488 kcal Electronic energy + Delta-G solvation = -24048.938161 eV Core-core repulsion = 20441.446595 eV Total energy + Delta-G solvation = -3607.491565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28624 -39.58607 -38.65264 -35.06401 -34.35309 -32.51137 -31.63315 -31.25330 -27.96568 -27.60493 -26.50524 -25.73564 -23.42387 -23.18814 -21.24703 -20.89109 -19.48382 -18.58909 -17.29217 -16.78608 -16.28800 -16.06486 -15.76803 -15.33894 -15.09613 -14.61599 -14.41587 -14.07535 -13.90893 -13.50473 -13.08373 -12.88533 -12.78443 -12.51169 -12.36972 -11.95496 -11.57875 -11.19495 -11.02119 -10.82086 -10.68614 -10.64752 -10.35323 -10.33504 -10.28937 -10.26695 -10.20794 -9.95806 -9.54704 -9.06070 -8.94481 -8.54427 -6.74338 -5.85414 -3.29063 -0.22707 0.62254 1.24044 1.25138 3.06957 3.10538 3.34382 3.40835 3.41178 3.64129 4.24417 4.42887 4.43942 4.72649 5.07938 5.13580 5.33337 5.46310 5.51310 5.68493 5.92556 5.94209 5.98053 6.05256 6.14198 6.28061 6.42383 6.51835 6.64214 6.75806 6.83028 7.06188 7.16288 7.44627 7.55840 7.70012 7.88085 8.10162 8.32450 9.10040 9.72969 10.30433 11.22662 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.003163 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.806334 B = 8850.821464 C = 9249.205486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.077 3.923 3 C 0.137 3.863 4 N -0.694 5.694 5 C 0.597 3.403 6 O -0.530 6.530 7 C -0.017 4.017 8 C -0.236 4.236 9 S 0.452 5.548 10 N -0.289 5.289 11 N -0.208 5.208 12 C 0.161 3.839 13 N -0.590 5.590 14 C -0.255 4.255 15 H 0.068 0.932 16 C 0.004 3.996 17 N -0.902 5.902 18 Si 0.904 3.096 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.384 6.384 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.412 0.588 31 H 0.209 0.791 32 H 0.030 0.970 33 H 0.097 0.903 34 H 0.256 0.744 35 H 0.061 0.939 36 H 0.026 0.974 37 H 0.081 0.919 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 13.888 -14.752 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 C 0.014 3.986 4 N -0.345 5.345 5 C 0.378 3.622 6 O -0.406 6.406 7 C -0.164 4.164 8 C -0.393 4.393 9 S 0.587 5.413 10 N -0.269 5.269 11 N -0.079 5.079 12 C 0.034 3.966 13 N -0.314 5.314 14 C -0.384 4.384 15 H 0.085 0.915 16 C -0.195 4.195 17 N -0.546 5.546 18 Si 0.733 3.267 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.303 6.303 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.249 0.751 31 H 0.226 0.774 32 H 0.048 0.952 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.099 0.901 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.545 14.258 -15.645 21.463 hybrid contribution -0.076 -0.861 1.928 2.113 sum -3.621 13.398 -13.717 19.514 Atomic orbital electron populations 1.22222 0.95656 1.03424 1.00830 1.22559 0.93696 0.90412 0.89700 1.21498 0.99060 0.89668 0.88382 1.45913 1.47879 1.10008 1.30693 1.16653 0.81150 0.82056 0.82378 1.90848 1.35900 1.68099 1.45714 1.22801 1.00820 0.93031 0.99754 1.28885 1.06717 0.99787 1.03908 1.81504 1.26026 1.18226 1.15518 1.78684 1.24188 1.03499 1.20580 1.71549 1.09225 1.27717 0.99418 1.21288 0.97854 0.83978 0.93475 1.43979 1.68677 1.04907 1.13837 1.19117 1.21472 1.12510 0.85321 0.91469 1.25044 0.97241 1.00065 0.97113 1.69994 1.29159 1.36818 1.18616 0.86353 0.80924 0.78365 0.81030 1.20863 1.21537 1.20966 1.21602 0.97566 0.95224 0.87308 1.23044 0.98398 0.83025 0.98737 1.87829 1.72842 1.25914 1.43745 0.90664 0.91819 0.93753 0.89446 0.90259 0.75057 0.77392 0.95169 0.88526 0.93369 0.92030 0.95630 0.90136 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 7.86 37.15 0.29 -2.57 16 2 C 0.08 1.45 0.78 -90.47 -0.07 1.38 16 3 C 0.14 2.34 4.85 -4.04 -0.02 2.32 16 4 N -0.69 -10.56 5.19 -61.37 -0.32 -10.88 16 5 C 0.60 9.01 7.81 -12.51 -0.10 8.91 16 6 O -0.53 -9.21 16.80 5.27 0.09 -9.12 16 7 C -0.02 -0.21 6.87 -83.77 -0.58 -0.78 16 8 C -0.24 -2.09 11.21 30.64 0.34 -1.75 16 9 S 0.45 3.14 23.38 -107.50 -2.51 0.62 16 10 N -0.29 -3.24 12.49 60.35 0.75 -2.49 16 11 N -0.21 -2.70 11.24 32.74 0.37 -2.33 16 12 C 0.16 3.71 4.11 -3.53 -0.01 3.69 16 13 N -0.59 -14.33 2.57 -171.81 -0.44 -14.77 16 14 C -0.25 -6.75 9.65 -15.06 -0.15 -6.89 16 15 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 16 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 17 N -0.90 -25.45 11.14 55.49 0.62 -24.83 16 18 Si 0.90 21.18 29.58 -169.99 -5.03 16.15 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.11 2.25 6.73 -3.53 -0.02 2.22 16 23 C 0.05 0.81 6.60 37.31 0.25 1.05 16 24 O -0.38 -7.21 10.17 -35.23 -0.36 -7.57 16 25 H 0.07 1.43 6.12 -51.93 -0.32 1.11 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.04 0.67 6.59 -51.93 -0.34 0.33 16 28 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.41 6.03 6.59 -40.82 -0.27 5.76 16 31 H 0.21 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 2.45 6.16 -51.93 -0.32 2.13 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.84 6.26 -51.93 -0.32 0.51 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -31.34 328.07 -6.53 -37.87 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.49 Total: 4.79 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.15 Total: 7.61 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.98 Total: -55.30 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.27 Total: -16.69 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -2.51 Total: 0.62 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.34 -6.53 -37.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108101682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.300 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds