Wall clock time and date at job start Fri Apr 10 2020 18:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.55410 * 2 1 4 4 N 1.46499 * 109.47354 * 304.87420 * 3 2 1 5 5 C 1.34767 * 120.00065 * 179.97438 * 4 3 2 6 6 O 1.21609 * 119.99815 * 359.97438 * 5 4 3 7 7 C 1.47448 * 120.00134 * 180.02562 * 5 4 3 8 8 C 1.37985 * 124.15510 * 179.97438 * 7 5 4 9 9 S 1.72103 * 104.03108 * 179.97438 * 8 7 5 10 10 N 1.56404 * 96.15682 * 0.02562 * 9 8 7 11 11 N 1.27416 * 109.87560 * 359.72209 * 10 9 8 12 12 C 1.53292 * 109.51267 * 120.12825 * 2 1 3 13 13 N 1.47165 * 108.41376 * 67.64295 * 12 2 1 14 14 C 1.36935 * 120.99578 * 230.54471 * 13 12 2 15 15 H 1.07992 * 120.00186 * 153.32389 * 14 13 12 16 16 C 1.38816 * 119.99602 * 333.33361 * 14 13 12 17 17 N 1.31616 * 120.00208 * 343.52858 * 16 14 13 18 18 Si 1.86797 * 119.99898 * 163.53345 * 16 14 13 19 19 H 1.48500 * 109.47409 * 59.99733 * 18 16 14 20 20 H 1.48501 * 109.46973 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47195 * 299.99374 * 18 16 14 22 22 C 1.47151 * 118.02621 * 50.46989 * 13 12 2 23 23 C 1.53294 * 108.41779 * 309.52979 * 22 13 12 24 24 O 1.42966 * 109.22198 * 52.28429 * 23 22 13 25 25 H 1.08997 * 109.47587 * 180.12462 * 1 2 3 26 26 H 1.09005 * 109.47135 * 300.12598 * 1 2 3 27 27 H 1.09003 * 109.47554 * 60.12280 * 1 2 3 28 28 H 1.09003 * 109.46779 * 64.87711 * 3 2 1 29 29 H 1.08998 * 109.46843 * 184.87144 * 3 2 1 30 30 H 0.97002 * 119.99524 * 359.97438 * 4 3 2 31 31 H 1.08004 * 127.98521 * 359.96517 * 8 7 5 32 32 H 1.09007 * 109.68283 * 187.34438 * 12 2 1 33 33 H 1.09002 * 109.68326 * 307.89778 * 12 2 1 34 34 H 0.96998 * 120.00577 * 180.02562 * 17 16 14 35 35 H 1.09006 * 109.68282 * 189.78626 * 22 13 12 36 36 H 1.09005 * 109.68198 * 69.27128 * 22 13 12 37 37 H 1.08997 * 109.51621 * 172.20381 * 23 22 13 38 38 H 1.08999 * 109.51217 * 292.30900 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.4613 2.1664 -1.1331 5 6 1.7717 3.4622 -1.3348 6 8 2.5335 4.0302 -0.5759 7 6 1.1868 4.1916 -2.4750 8 6 1.4443 5.5166 -2.7613 9 16 0.5110 5.8274 -4.1734 10 7 -0.0904 4.3889 -4.2970 11 7 0.3514 3.6524 -3.3558 12 6 2.0420 -0.7252 1.2497 13 7 1.6966 -2.1511 1.1339 14 6 1.0619 -2.8080 2.1541 15 1 0.4435 -3.6673 1.9409 16 6 1.2134 -2.3693 3.4624 17 7 2.1955 -1.5497 3.7721 18 14 0.0232 -2.9422 4.7832 19 1 0.0797 -4.4221 4.8923 20 1 0.3996 -2.3356 6.0854 21 1 -1.3554 -2.5247 4.4222 22 6 2.0521 -2.8497 -0.1115 23 6 1.5396 -2.0210 -1.2949 24 8 2.0075 -0.6763 -1.1656 25 1 -0.3634 -1.0276 0.0022 26 1 -0.3634 0.5158 0.8889 27 1 -0.3634 0.5119 -0.8911 28 1 1.7525 1.9302 0.9305 29 1 3.1285 1.4414 -0.0873 30 1 0.8534 1.7133 -1.7382 31 1 2.0838 6.2008 -2.2233 32 1 3.1241 -0.6148 1.3208 33 1 1.5704 -0.3042 2.1376 34 1 2.3016 -1.2434 4.6863 35 1 1.5871 -3.8356 -0.1249 36 1 3.1351 -2.9537 -0.1778 37 1 1.9113 -2.4477 -2.2264 38 1 0.4496 -2.0291 -1.3001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108101682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:25 Heat of formation + Delta-G solvation = 0.027507 kcal Electronic energy + Delta-G solvation = -24049.952990 eV Core-core repulsion = 20441.446595 eV Total energy + Delta-G solvation = -3608.506395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.16459 -40.95793 -40.00583 -36.60337 -36.00666 -33.55472 -33.21173 -32.85395 -29.59740 -28.58051 -27.98812 -27.26823 -25.01989 -24.50410 -22.77316 -21.88116 -20.64274 -20.07716 -18.95163 -17.95699 -17.47814 -17.21604 -16.96959 -16.77716 -16.40700 -16.07378 -15.81453 -15.57963 -15.38753 -15.19597 -14.69168 -14.46554 -13.99138 -13.66851 -13.48423 -13.19424 -13.05138 -12.93002 -12.75930 -12.53740 -12.44320 -12.17693 -11.96273 -11.86722 -11.57640 -11.27709 -11.16992 -11.11738 -10.89541 -10.75407 -10.49661 -10.23967 -8.70456 -7.88771 -5.35776 -0.93288 -0.04594 0.30694 0.54479 1.47335 1.49300 1.56101 1.96410 1.99852 2.48860 2.72025 2.79225 3.25657 3.49442 3.63359 3.80503 3.94282 4.00004 4.09226 4.36407 4.41297 4.45809 4.54311 4.60926 4.70098 4.76463 4.95194 5.04569 5.10186 5.20164 5.21726 5.34102 5.53658 5.62270 6.19795 6.29999 6.36681 6.53746 6.93602 7.08118 7.76793 8.31279 9.16917 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.003163 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.806334 B = 8850.821464 C = 9249.205486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.091 3.909 3 C 0.147 3.853 4 N -0.691 5.691 5 C 0.600 3.400 6 O -0.559 6.559 7 C -0.044 4.044 8 C -0.236 4.236 9 S 0.570 5.430 10 N -0.331 5.331 11 N -0.235 5.235 12 C 0.170 3.830 13 N -0.607 5.607 14 C -0.262 4.262 15 H 0.072 0.928 16 C -0.047 4.047 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.276 1.276 20 H -0.296 1.296 21 H -0.276 1.276 22 C 0.104 3.896 23 C 0.052 3.948 24 O -0.387 6.387 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.417 0.583 31 H 0.230 0.770 32 H -0.003 1.003 33 H 0.069 0.931 34 H 0.251 0.749 35 H 0.072 0.928 36 H 0.014 0.986 37 H 0.116 0.884 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 15.125 -16.879 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.050 3.950 3 C 0.022 3.978 4 N -0.342 5.342 5 C 0.382 3.618 6 O -0.438 6.438 7 C -0.192 4.192 8 C -0.392 4.392 9 S 0.705 5.295 10 N -0.312 5.312 11 N -0.104 5.104 12 C 0.043 3.957 13 N -0.331 5.331 14 C -0.391 4.391 15 H 0.090 0.910 16 C -0.243 4.243 17 N -0.580 5.580 18 Si 0.795 3.205 19 H -0.202 1.202 20 H -0.222 1.222 21 H -0.202 1.202 22 C -0.022 4.022 23 C -0.026 4.026 24 O -0.307 6.307 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.255 0.745 31 H 0.246 0.754 32 H 0.015 0.985 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.032 0.968 37 H 0.134 0.866 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.922 15.474 -17.822 24.109 hybrid contribution 0.389 -1.139 2.459 2.738 sum -4.532 14.335 -15.363 21.495 Atomic orbital electron populations 1.22116 0.94250 1.02880 1.01931 1.22235 0.94522 0.90599 0.87611 1.21204 0.98372 0.89023 0.89155 1.45765 1.47954 1.10304 1.30132 1.16947 0.80464 0.81670 0.82725 1.90823 1.37246 1.68615 1.47066 1.22435 1.02636 0.94238 0.99846 1.29289 1.06384 0.98811 1.04763 1.81098 1.22273 1.14072 1.12042 1.78301 1.25784 1.06200 1.20930 1.71585 1.09941 1.28935 0.99967 1.21045 0.95639 0.84273 0.94759 1.44232 1.68720 1.05567 1.14622 1.19455 1.21183 1.12439 0.86068 0.91028 1.25782 0.98719 1.00684 0.99129 1.70159 1.30905 1.38403 1.18558 0.85356 0.79076 0.77977 0.78130 1.20217 1.22194 1.20189 1.21796 0.97099 0.96249 0.87045 1.23113 0.99033 0.81816 0.98619 1.87839 1.73160 1.26562 1.43103 0.91910 0.92256 0.91094 0.89885 0.91457 0.74520 0.75365 0.98488 0.91251 0.93984 0.90992 0.96794 0.86605 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 7.86 71.98 0.57 -4.72 16 2 C 0.09 3.45 0.78 -10.70 -0.01 3.44 16 3 C 0.15 5.12 4.85 86.38 0.42 5.53 16 4 N -0.69 -20.89 5.19 -466.35 -2.42 -23.31 16 5 C 0.60 17.93 7.81 86.67 0.68 18.61 16 6 O -0.56 -19.55 16.80 -4.06 -0.07 -19.62 16 7 C -0.04 -1.04 6.87 41.36 0.28 -0.75 16 8 C -0.24 -3.57 11.21 67.76 0.76 -2.81 16 9 S 0.57 5.94 23.38 -56.49 -1.32 4.62 16 10 N -0.33 -6.70 12.49 37.02 0.46 -6.23 16 11 N -0.23 -5.75 11.24 -50.34 -0.57 -6.31 16 12 C 0.17 8.13 4.11 86.35 0.35 8.49 16 13 N -0.61 -29.98 2.57 -697.50 -1.79 -31.77 16 14 C -0.26 -14.00 9.65 84.03 0.81 -13.19 16 15 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 16 C -0.05 -2.60 4.95 84.86 0.42 -2.18 16 17 N -0.93 -54.62 11.14 21.65 0.24 -54.37 16 18 Si 0.97 44.09 29.58 68.60 2.03 46.12 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 22 C 0.10 4.22 6.73 86.35 0.58 4.80 16 23 C 0.05 1.72 6.60 72.08 0.48 2.19 16 24 O -0.39 -14.21 10.17 -148.98 -1.52 -15.73 16 25 H 0.06 2.32 6.12 -2.39 -0.01 2.30 16 26 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.07 2.04 6.59 -2.39 -0.02 2.03 16 28 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.42 11.83 6.59 -92.71 -0.61 11.22 16 31 H 0.23 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 33 H 0.07 3.69 6.16 -2.39 -0.01 3.68 16 34 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.07 2.74 7.96 -2.38 -0.02 2.72 16 36 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.06 1.87 6.26 -2.39 -0.01 1.86 16 Total: -1.00 -69.75 328.07 0.89 -68.86 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.50 Total: 18.33 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 5.34 Total: 19.41 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -4.07 Total: -122.00 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.58 Total: -35.35 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 5.94 SS G_CDS: -1.32 Total: 4.62 kcal Total: -69.75 0.89 -68.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108101682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.892 kcal (2) G-P(sol) polarization free energy of solvation -69.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds