Wall clock time and date at job start Fri Apr 10 2020 18:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86804 * 119.99605 * 2 1 4 4 H 1.48500 * 109.46873 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47005 * 299.99394 * 3 2 1 6 6 H 1.48492 * 109.47408 * 59.99887 * 3 2 1 7 7 C 1.40054 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 173.70205 * 7 2 1 9 9 C 1.41266 * 120.00119 * 353.97166 * 7 2 1 10 10 C 1.40718 * 120.15922 * 185.85919 * 9 7 2 11 11 N 1.31905 * 119.93311 * 179.97438 * 10 9 7 12 12 C 1.32158 * 120.27160 * 359.97438 * 11 10 9 13 13 C 1.39921 * 120.31698 * 0.02562 * 12 11 10 14 14 N 1.38833 * 119.96617 * 180.02562 * 13 12 11 15 15 C 1.46499 * 120.00072 * 359.97438 * 14 13 12 16 16 C 1.53003 * 109.47193 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47165 * 180.02562 * 16 15 14 18 18 C 1.47070 * 126.29874 * 274.69051 * 17 16 15 19 19 C 1.54316 * 109.96731 * 150.90387 * 18 17 16 20 20 C 1.55604 * 104.19388 * 45.50694 * 19 18 17 21 21 S 1.67000 * 126.30469 * 95.00117 * 17 16 15 22 22 O 1.42105 * 105.13266 * 298.89368 * 21 17 16 23 23 O 1.42096 * 105.13103 * 68.56345 * 21 17 16 24 24 N 1.32257 * 120.06730 * 359.73991 * 13 12 11 25 25 H 0.96995 * 120.00069 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.03830 * 359.95380 * 10 9 7 27 27 H 1.07993 * 119.84416 * 179.97438 * 12 11 10 28 28 H 0.97003 * 120.00086 * 179.97438 * 14 13 12 29 29 H 1.08997 * 109.47684 * 300.00777 * 15 14 13 30 30 H 1.09006 * 109.46788 * 60.00406 * 15 14 13 31 31 H 1.08998 * 109.46806 * 300.00169 * 16 15 14 32 32 H 1.09001 * 109.46847 * 60.00744 * 16 15 14 33 33 H 1.09002 * 109.35429 * 271.18317 * 18 17 16 34 34 H 1.09002 * 109.35861 * 30.82715 * 18 17 16 35 35 H 1.09003 * 110.65075 * 286.77169 * 19 18 17 36 36 H 1.09003 * 110.38818 * 164.11092 * 19 18 17 37 37 H 1.08993 * 111.17051 * 204.06116 * 20 19 18 38 38 H 1.08997 * 111.16604 * 79.78738 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.7012 1.3465 0.0006 5 1 1.8825 2.3964 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0076 -1.2129 0.0005 8 1 3.0828 -1.2157 -0.1021 9 6 1.3072 -2.4329 0.1296 10 6 2.0132 -3.6437 0.2544 11 7 1.3547 -4.7802 0.3751 12 6 0.0332 -4.7871 0.3799 13 6 -0.6799 -3.5896 0.2565 14 7 -2.0681 -3.6053 0.2630 15 6 -2.7857 -4.8753 0.3984 16 6 -4.2931 -4.6143 0.3757 17 7 -5.0107 -5.8843 0.5118 18 6 -5.3564 -6.8100 -0.5775 19 6 -5.4187 -8.2555 -0.0408 20 6 -6.2301 -8.1369 1.2816 21 16 -5.5931 -6.5438 1.9312 22 8 -4.4460 -6.7418 2.7463 23 8 -6.6554 -5.6882 2.3293 24 7 -0.0328 -2.4421 0.1394 25 1 -0.4850 0.8400 -0.0004 26 1 3.0932 -3.6425 0.2510 27 1 -0.4990 -5.7216 0.4787 28 1 -2.5630 -2.7753 0.1779 29 1 -2.5188 -5.5335 -0.4283 30 1 -2.5126 -5.3481 1.3419 31 1 -4.5603 -3.9561 1.2024 32 1 -4.5659 -4.1419 -0.5679 33 1 -6.3257 -6.5337 -0.9924 34 1 -4.5990 -6.7474 -1.3589 35 1 -4.4165 -8.6347 0.1597 36 1 -5.9370 -8.9017 -0.7493 37 1 -6.0000 -8.9586 1.9597 38 1 -7.3004 -8.0810 1.0830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162782722.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:30 Heat of formation + Delta-G solvation = -9.489857 kcal Electronic energy + Delta-G solvation = -23345.152805 eV Core-core repulsion = 19736.233707 eV Total energy + Delta-G solvation = -3608.919099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.89937 -37.83919 -37.20628 -36.14789 -35.59744 -33.90643 -33.25837 -31.52027 -29.71012 -27.71154 -26.18814 -25.78398 -23.14897 -22.44202 -22.05069 -20.87778 -19.11114 -17.65587 -17.38851 -17.26689 -16.38273 -16.05234 -15.46068 -15.08621 -14.89393 -14.83310 -14.66656 -14.47136 -14.23938 -13.69019 -13.44542 -13.12173 -12.94253 -12.55843 -12.35664 -12.25158 -12.13242 -11.76189 -11.75020 -11.44329 -11.35219 -11.19532 -11.12072 -10.79730 -10.66872 -10.32075 -9.82753 -9.60083 -9.34989 -9.28997 -8.32274 -7.35945 -6.69649 -6.42126 -4.62633 -0.06541 2.19989 2.72656 3.06492 3.10999 3.14008 3.31164 3.35502 3.51241 3.89697 3.93185 4.09974 4.17833 4.50873 4.57097 4.74853 4.88788 4.98814 5.11646 5.16943 5.27645 5.40334 5.45305 5.50823 5.90693 6.04566 6.10504 6.14384 6.31083 6.38382 6.56885 6.83178 7.06636 7.16744 7.63052 7.98130 8.07098 8.45792 8.58896 8.88396 9.45289 10.03374 10.21659 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.025285 B = 0.002954 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.128133 B = 9476.547334 C =10017.485842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.068 3.932 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.417 4.417 8 H 0.090 0.910 9 C 0.246 3.754 10 C -0.107 4.107 11 N -0.408 5.408 12 C -0.168 4.168 13 C 0.374 3.626 14 N -0.732 5.732 15 C 0.114 3.886 16 C 0.151 3.849 17 N -0.987 5.987 18 C 0.077 3.923 19 C -0.126 4.126 20 C -0.600 4.600 21 S 2.568 3.432 22 O -0.948 6.948 23 O -0.958 6.958 24 N -0.509 5.509 25 H 0.273 0.727 26 H 0.130 0.870 27 H 0.120 0.880 28 H 0.396 0.604 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.200 -11.881 -2.041 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.450 4.450 8 H 0.109 0.891 9 C 0.117 3.883 10 C -0.277 4.277 11 N -0.120 5.120 12 C -0.329 4.329 13 C 0.131 3.869 14 N -0.370 5.370 15 C -0.013 4.013 16 C 0.026 3.974 17 N -0.828 5.828 18 C -0.049 4.049 19 C -0.165 4.165 20 C -0.731 4.731 21 S 2.664 3.336 22 O -0.937 6.937 23 O -0.947 6.947 24 N -0.235 5.235 25 H 0.084 0.916 26 H 0.147 0.853 27 H 0.138 0.862 28 H 0.231 0.769 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.159 0.841 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.391 -11.481 -1.085 19.232 hybrid contribution -0.028 0.542 -0.597 0.807 sum -15.418 -10.939 -1.682 18.979 Atomic orbital electron populations 1.70116 1.07360 1.27863 1.27757 1.26130 0.94933 1.01310 0.93475 0.86219 0.80945 0.80831 0.78554 1.18196 1.19842 1.19778 1.19649 0.94923 0.89230 1.41159 0.89146 1.19096 0.87668 0.93240 0.88246 1.22915 0.98963 0.89328 1.16511 1.67510 1.08244 1.30216 1.05986 1.21935 0.90709 0.95886 1.24395 1.19449 0.84838 0.92041 0.90589 1.43895 1.02764 1.07429 1.82910 1.21607 0.90416 0.87348 1.01949 1.21122 0.90358 0.82086 1.03840 1.57106 1.72318 1.29819 1.23599 1.22143 1.02879 0.87217 0.92708 1.22709 1.01639 0.97121 0.95061 1.30861 1.10864 1.22014 1.09314 1.06555 0.75580 0.77703 0.73756 1.93659 1.48216 1.85719 1.66118 1.93617 1.57496 1.62892 1.80696 1.69020 1.08382 1.22292 1.23815 0.91576 0.85278 0.86224 0.76894 0.92385 0.91601 0.89722 0.89486 0.90577 0.88518 0.88429 0.87202 0.84133 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.39 11.51 55.55 0.64 -17.75 16 2 C 0.07 1.69 5.49 -17.34 -0.10 1.59 16 3 Si 0.91 18.18 29.57 -169.99 -5.03 13.15 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.42 -11.00 9.15 -37.75 -0.35 -11.34 16 8 H 0.09 2.20 7.86 -52.48 -0.41 1.79 16 9 C 0.25 6.83 6.54 -84.83 -0.55 6.28 16 10 C -0.11 -2.82 10.97 -16.58 -0.18 -3.01 16 11 N -0.41 -10.70 10.47 -12.11 -0.13 -10.82 16 12 C -0.17 -4.15 10.50 -16.78 -0.18 -4.33 16 13 C 0.37 9.26 7.66 -155.01 -1.19 8.07 16 14 N -0.73 -14.33 5.72 -60.28 -0.34 -14.67 16 15 C 0.11 1.76 5.22 -4.04 -0.02 1.74 16 16 C 0.15 1.78 6.47 -4.04 -0.03 1.75 16 17 N -0.99 -9.73 3.31 -113.19 -0.38 -10.11 16 18 C 0.08 0.47 6.83 -3.04 -0.02 0.45 16 19 C -0.13 -0.56 6.81 -24.66 -0.17 -0.73 16 20 C -0.60 -3.04 7.51 38.54 0.29 -2.75 16 21 S 2.57 26.77 6.17 -107.50 -0.66 26.10 16 22 O -0.95 -13.83 18.14 -57.41 -1.04 -14.87 16 23 O -0.96 -13.14 18.13 -57.41 -1.04 -14.19 16 24 N -0.51 -14.04 8.09 -10.14 -0.08 -14.12 16 25 H 0.27 6.37 8.29 -40.82 -0.34 6.03 16 26 H 0.13 3.10 8.06 -52.49 -0.42 2.68 16 27 H 0.12 2.66 6.70 -52.49 -0.35 2.31 16 28 H 0.40 7.43 8.60 -40.82 -0.35 7.08 16 29 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 30 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.14 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 336.09 15.07 5.06 5.06 Total: -1.00 -36.61 336.09 -10.36 -46.97 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.88 Total: 7.52 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.49 Total: -2.28 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -0.29 Total: -67.47 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -2.08 Total: -29.06 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: 26.77 SS G_CDS: -0.66 Total: 26.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.61 -10.36 -46.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162782722.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.484 kcal (2) G-P(sol) polarization free energy of solvation -36.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds