Wall clock time and date at job start Fri Apr 10 2020 18:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86804 * 119.99605 * 2 1 4 4 H 1.48500 * 109.46873 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47005 * 299.99394 * 3 2 1 6 6 H 1.48492 * 109.47408 * 59.99887 * 3 2 1 7 7 C 1.40054 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 173.70205 * 7 2 1 9 9 C 1.41266 * 120.00119 * 353.97166 * 7 2 1 10 10 C 1.40718 * 120.15922 * 185.85919 * 9 7 2 11 11 N 1.31905 * 119.93311 * 179.97438 * 10 9 7 12 12 C 1.32158 * 120.27160 * 359.97438 * 11 10 9 13 13 C 1.39921 * 120.31698 * 0.02562 * 12 11 10 14 14 N 1.38833 * 119.96617 * 180.02562 * 13 12 11 15 15 C 1.46499 * 120.00072 * 359.97438 * 14 13 12 16 16 C 1.53003 * 109.47193 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47165 * 180.02562 * 16 15 14 18 18 C 1.47070 * 126.29874 * 274.69051 * 17 16 15 19 19 C 1.54316 * 109.96731 * 150.90387 * 18 17 16 20 20 C 1.55604 * 104.19388 * 45.50694 * 19 18 17 21 21 S 1.67000 * 126.30469 * 95.00117 * 17 16 15 22 22 O 1.42105 * 105.13266 * 298.89368 * 21 17 16 23 23 O 1.42096 * 105.13103 * 68.56345 * 21 17 16 24 24 N 1.32257 * 120.06730 * 359.73991 * 13 12 11 25 25 H 0.96995 * 120.00069 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.03830 * 359.95380 * 10 9 7 27 27 H 1.07993 * 119.84416 * 179.97438 * 12 11 10 28 28 H 0.97003 * 120.00086 * 179.97438 * 14 13 12 29 29 H 1.08997 * 109.47684 * 300.00777 * 15 14 13 30 30 H 1.09006 * 109.46788 * 60.00406 * 15 14 13 31 31 H 1.08998 * 109.46806 * 300.00169 * 16 15 14 32 32 H 1.09001 * 109.46847 * 60.00744 * 16 15 14 33 33 H 1.09002 * 109.35429 * 271.18317 * 18 17 16 34 34 H 1.09002 * 109.35861 * 30.82715 * 18 17 16 35 35 H 1.09003 * 110.65075 * 286.77169 * 19 18 17 36 36 H 1.09003 * 110.38818 * 164.11092 * 19 18 17 37 37 H 1.08993 * 111.17051 * 204.06116 * 20 19 18 38 38 H 1.08997 * 111.16604 * 79.78738 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.7012 1.3465 0.0006 5 1 1.8825 2.3964 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0076 -1.2129 0.0005 8 1 3.0828 -1.2157 -0.1021 9 6 1.3072 -2.4329 0.1296 10 6 2.0132 -3.6437 0.2544 11 7 1.3547 -4.7802 0.3751 12 6 0.0332 -4.7871 0.3799 13 6 -0.6799 -3.5896 0.2565 14 7 -2.0681 -3.6053 0.2630 15 6 -2.7857 -4.8753 0.3984 16 6 -4.2931 -4.6143 0.3757 17 7 -5.0107 -5.8843 0.5118 18 6 -5.3564 -6.8100 -0.5775 19 6 -5.4187 -8.2555 -0.0408 20 6 -6.2301 -8.1369 1.2816 21 16 -5.5931 -6.5438 1.9312 22 8 -4.4460 -6.7418 2.7463 23 8 -6.6554 -5.6882 2.3293 24 7 -0.0328 -2.4421 0.1394 25 1 -0.4850 0.8400 -0.0004 26 1 3.0932 -3.6425 0.2510 27 1 -0.4990 -5.7216 0.4787 28 1 -2.5630 -2.7753 0.1779 29 1 -2.5188 -5.5335 -0.4283 30 1 -2.5126 -5.3481 1.3419 31 1 -4.5603 -3.9561 1.2024 32 1 -4.5659 -4.1419 -0.5679 33 1 -6.3257 -6.5337 -0.9924 34 1 -4.5990 -6.7474 -1.3589 35 1 -4.4165 -8.6347 0.1597 36 1 -5.9370 -8.9017 -0.7493 37 1 -6.0000 -8.9586 1.9597 38 1 -7.3004 -8.0810 1.0830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162782722.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:29 Heat of formation + Delta-G solvation = -39.028539 kcal Electronic energy + Delta-G solvation = -23346.433699 eV Core-core repulsion = 19736.233707 eV Total energy + Delta-G solvation = -3610.199992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81050 -38.63828 -38.11159 -37.17869 -36.81866 -35.79312 -34.35549 -33.30903 -31.32466 -28.92958 -27.74716 -26.89103 -24.55308 -23.94511 -22.90395 -22.62471 -19.95481 -19.39717 -18.59156 -18.18757 -17.69150 -17.15691 -16.91894 -16.70943 -16.52865 -16.06528 -15.73190 -15.41919 -15.30268 -14.81291 -14.73697 -14.52399 -13.95225 -13.58147 -13.50337 -13.24517 -13.21324 -13.07577 -13.03215 -12.95776 -12.55034 -12.52780 -12.23329 -12.01748 -11.96355 -11.71148 -11.45954 -11.37478 -11.29622 -10.23393 -10.05883 -9.33152 -8.51399 -8.33129 -6.63711 -0.78541 0.83318 1.24843 1.43427 1.43750 1.56060 1.59892 2.22059 2.49319 2.68750 2.83667 3.06582 3.35931 3.62646 3.84613 3.89614 3.92031 4.07236 4.20080 4.32630 4.40666 4.45077 4.52026 4.61186 4.65677 4.82800 4.87762 4.92276 4.95676 5.07723 5.13157 5.15611 5.22115 5.54376 5.71482 6.10332 6.20329 6.64736 6.68632 6.99259 7.45501 8.06924 8.35688 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.025285 B = 0.002954 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.128133 B = 9476.547334 C =10017.485842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.022 3.978 3 Si 0.995 3.005 4 H -0.250 1.250 5 H -0.264 1.264 6 H -0.269 1.269 7 C -0.439 4.439 8 H 0.102 0.898 9 C 0.215 3.785 10 C -0.132 4.132 11 N -0.417 5.417 12 C -0.179 4.179 13 C 0.367 3.633 14 N -0.721 5.721 15 C 0.116 3.884 16 C 0.157 3.843 17 N -0.990 5.990 18 C 0.065 3.935 19 C -0.124 4.124 20 C -0.553 4.553 21 S 2.542 3.458 22 O -1.006 7.006 23 O -1.004 7.004 24 N -0.539 5.539 25 H 0.283 0.717 26 H 0.144 0.856 27 H 0.141 0.859 28 H 0.400 0.600 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.149 0.851 37 H 0.164 0.836 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.536 -12.703 -3.498 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.201 4.201 3 Si 0.814 3.186 4 H -0.173 1.173 5 H -0.189 1.189 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.120 0.880 9 C 0.087 3.913 10 C -0.301 4.301 11 N -0.129 5.129 12 C -0.341 4.341 13 C 0.122 3.878 14 N -0.358 5.358 15 C -0.011 4.011 16 C 0.032 3.968 17 N -0.831 5.831 18 C -0.060 4.060 19 C -0.163 4.163 20 C -0.688 4.688 21 S 2.644 3.356 22 O -0.995 6.995 23 O -0.993 6.993 24 N -0.267 5.267 25 H 0.093 0.907 26 H 0.161 0.839 27 H 0.159 0.841 28 H 0.235 0.765 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.742 -12.301 -2.526 20.928 hybrid contribution 0.255 0.654 -0.193 0.728 sum -16.486 -11.647 -2.720 20.368 Atomic orbital electron populations 1.70189 1.09090 1.29553 1.27447 1.27115 0.95806 1.04808 0.92391 0.84966 0.79553 0.75296 0.78755 1.17349 1.18858 1.19354 1.20085 0.95738 0.89869 1.41453 0.88014 1.19550 0.88343 0.94343 0.89060 1.23102 0.99706 0.89264 1.17998 1.67500 1.08989 1.30279 1.06120 1.22293 0.90594 0.96877 1.24339 1.19778 0.86753 0.91550 0.89765 1.44027 1.01134 1.09234 1.81375 1.21789 0.92494 0.85564 1.01213 1.20935 0.87947 0.83328 1.04619 1.56974 1.71685 1.29683 1.24750 1.22531 1.04280 0.87469 0.91736 1.22888 1.01991 0.96391 0.95061 1.30634 1.12407 1.16421 1.09382 1.07068 0.74663 0.79967 0.73904 1.93588 1.50510 1.87074 1.68355 1.93553 1.57900 1.66075 1.81807 1.69041 1.08667 1.23535 1.25417 0.90653 0.83909 0.84120 0.76498 0.91128 0.93665 0.90801 0.87251 0.88213 0.87938 0.88694 0.83296 0.81813 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.79 11.51 21.84 0.25 -38.53 16 2 C 0.02 1.11 5.49 85.30 0.47 1.58 16 3 Si 0.99 36.84 29.57 68.60 2.03 38.87 16 4 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 5 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.44 -23.52 9.15 23.46 0.21 -23.30 16 8 H 0.10 5.00 7.86 -2.91 -0.02 4.97 16 9 C 0.21 12.29 6.54 40.16 0.26 12.55 16 10 C -0.13 -7.14 10.97 85.29 0.94 -6.20 16 11 N -0.42 -22.32 10.47 -192.23 -2.01 -24.33 16 12 C -0.18 -9.01 10.50 85.05 0.89 -8.12 16 13 C 0.37 18.58 7.66 133.36 1.02 19.60 16 14 N -0.72 -28.73 5.72 -344.63 -1.97 -30.70 16 15 C 0.12 3.59 5.22 86.38 0.45 4.04 16 16 C 0.16 3.69 6.47 86.38 0.56 4.25 16 17 N -0.99 -18.50 3.31 -512.02 -1.70 -20.20 16 18 C 0.06 0.58 6.83 86.72 0.59 1.18 16 19 C -0.12 -0.56 6.81 31.94 0.22 -0.34 16 20 C -0.55 -3.44 7.51 72.88 0.55 -2.89 16 21 S 2.54 52.37 6.17 -56.49 -0.35 52.02 16 22 O -1.01 -30.79 18.14 -127.77 -2.32 -33.11 16 23 O -1.00 -28.22 18.13 -127.77 -2.32 -30.54 16 24 N -0.54 -30.59 8.09 -186.01 -1.51 -32.09 16 25 H 0.28 13.20 8.29 -92.71 -0.77 12.43 16 26 H 0.14 7.05 8.06 -2.91 -0.02 7.03 16 27 H 0.14 6.30 6.70 -2.91 -0.02 6.28 16 28 H 0.40 15.31 8.60 -92.71 -0.80 14.51 16 29 H 0.07 2.02 7.93 -2.39 -0.02 2.00 16 30 H 0.05 1.61 7.93 -2.38 -0.02 1.59 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.17 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -83.79 336.09 -3.43 -87.22 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.30 Total: 29.07 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 6.16 Total: 2.33 kcal Atomic # 7 Polarization: -138.93 SS G_CDS: -6.94 Total: -145.86 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -4.63 Total: -63.64 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 16 Polarization: 52.37 SS G_CDS: -0.35 Total: 52.02 kcal Total: -83.79 -3.43 -87.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162782722.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.192 kcal (2) G-P(sol) polarization free energy of solvation -83.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds