Wall clock time and date at job start Fri Apr 10 2020 18:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29489 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48502 * 109.47042 * 271.12876 * 3 2 1 5 5 H 1.48500 * 109.47434 * 31.12599 * 3 2 1 6 6 H 1.48504 * 109.46991 * 151.12928 * 3 2 1 7 7 C 1.46594 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99682 * 356.63185 * 7 2 1 9 9 C 1.39515 * 120.00127 * 176.62585 * 7 2 1 10 10 C 1.41748 * 120.18588 * 325.35986 * 9 7 2 11 11 C 1.35801 * 119.80361 * 179.69875 * 10 9 7 12 12 C 1.40183 * 120.18796 * 0.54212 * 11 10 9 13 13 N 1.37663 * 119.81080 * 179.72057 * 12 11 10 14 14 C 1.46501 * 119.99812 * 353.41971 * 13 12 11 15 15 C 1.52998 * 109.47210 * 305.63981 * 14 13 12 16 16 O 1.42902 * 109.47245 * 299.81412 * 15 14 13 17 17 C 1.53002 * 109.46861 * 185.64421 * 14 13 12 18 18 O 1.42902 * 109.47060 * 180.02562 * 17 14 13 19 19 C 1.52992 * 109.47193 * 65.63998 * 14 13 12 20 20 O 1.42905 * 109.47220 * 61.41835 * 19 14 13 21 21 C 1.40142 * 120.37952 * 359.45101 * 12 11 10 22 22 C 1.35834 * 120.18910 * 0.27251 * 21 12 11 23 23 N 1.48014 * 120.09355 * 179.97438 * 22 21 12 24 24 O 1.31698 * 120.00571 * 4.25080 * 23 22 21 25 25 O 1.31708 * 119.99818 * 184.25973 * 23 22 21 26 26 H 0.97001 * 120.00195 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.09638 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.90705 * 180.27230 * 11 10 9 29 29 H 0.97000 * 119.99838 * 173.41838 * 13 12 11 30 30 H 1.08996 * 109.47393 * 179.80614 * 15 14 13 31 31 H 1.09000 * 109.47218 * 59.80981 * 15 14 13 32 32 H 0.96705 * 113.99784 * 180.02562 * 16 15 14 33 33 H 1.09002 * 109.47030 * 299.99513 * 17 14 13 34 34 H 1.08998 * 109.47339 * 60.00219 * 17 14 13 35 35 H 0.96697 * 114.00474 * 179.97438 * 18 17 14 36 36 H 1.08999 * 109.47164 * 181.41541 * 19 14 13 37 37 H 1.08996 * 109.47616 * 301.41703 * 19 14 13 38 38 H 0.96692 * 114.00130 * 179.97438 * 20 19 14 39 39 H 1.08000 * 119.90796 * 180.28972 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 2.4524 2.0602 -1.3998 5 1 1.4384 2.6457 0.7237 6 1 3.5382 1.4334 0.6760 7 6 2.0279 -1.2695 0.0006 8 1 1.4893 -2.2040 0.0559 9 6 3.4213 -1.2706 -0.0705 10 6 4.0968 -0.2843 -0.8322 11 6 5.4535 -0.2889 -0.8911 12 6 6.1852 -1.2721 -0.2106 13 7 7.5601 -1.2729 -0.2803 14 6 8.2486 -0.3406 -1.1764 15 6 7.7030 -0.5014 -2.5968 16 8 7.9269 -1.8399 -3.0444 17 6 9.7489 -0.6406 -1.1695 18 8 10.4206 0.2692 -2.0432 19 6 8.0130 1.0937 -0.6990 20 8 8.5521 1.2530 0.6149 21 6 5.5254 -2.2508 0.5448 22 6 4.1691 -2.2573 0.6189 23 7 3.4744 -3.2924 1.4169 24 8 4.1719 -4.1575 2.1237 25 8 2.1585 -3.3484 1.4200 26 1 -0.4850 0.8400 -0.0004 27 1 3.5343 0.4713 -1.3606 28 1 5.9701 0.4644 -1.4674 29 1 8.0729 -1.8907 0.2639 30 1 8.2128 0.1946 -3.2628 31 1 6.6335 -0.2910 -2.6011 32 1 7.6057 -2.0141 -3.9398 33 1 10.1377 -0.5260 -0.1577 34 1 9.9167 -1.6624 -1.5098 35 1 11.3775 0.1373 -2.0882 36 1 8.5043 1.7887 -1.3800 37 1 6.9428 1.2992 -0.6799 38 1 8.4387 2.1405 0.9815 39 1 6.0969 -3.0019 1.0698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167931198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:37 Heat of formation + Delta-G solvation = -75.287826 kcal Electronic energy + Delta-G solvation = -27102.574283 eV Core-core repulsion = 23015.756348 eV Total energy + Delta-G solvation = -4086.817935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.03366 -38.27065 -36.57025 -36.37211 -36.07478 -34.99755 -33.88560 -32.46328 -31.43951 -30.58670 -29.16133 -26.46465 -25.54396 -25.34582 -23.75452 -21.95619 -20.83694 -19.57775 -18.27658 -17.90535 -17.43265 -17.31951 -17.18894 -16.45119 -16.04369 -15.63593 -15.07711 -14.81395 -14.39561 -14.30516 -14.05770 -13.96850 -13.92911 -13.44437 -13.16773 -13.09148 -12.70707 -12.48708 -12.25758 -12.07342 -11.50465 -11.45389 -11.06737 -10.87889 -10.68640 -10.32773 -10.21115 -10.01220 -9.85449 -9.62980 -9.37643 -9.27960 -8.95960 -8.85666 -8.39311 -7.67301 -7.05856 -4.83273 0.91870 2.29672 2.59640 2.64482 2.81632 2.82766 3.14280 3.40491 3.51001 3.88917 3.90728 4.29204 4.68535 4.79422 4.85472 4.87727 5.11270 5.30642 5.37355 5.41541 5.43378 5.55389 5.64455 5.72007 5.86430 5.94491 6.14775 6.28713 6.47038 6.69757 6.87786 7.03658 7.20651 7.38327 7.41223 7.56172 7.65242 7.72330 7.90400 8.05354 8.23048 8.33637 8.88962 9.19966 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.005184 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.864027 B = 5399.586212 C = 6394.832628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.060 3.940 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.229 1.229 7 C -0.304 4.304 8 H 0.143 0.857 9 C 0.044 3.956 10 C -0.153 4.153 11 C -0.127 4.127 12 C 0.126 3.874 13 N -0.721 5.721 14 C 0.200 3.800 15 C 0.056 3.944 16 O -0.558 6.558 17 C 0.085 3.915 18 O -0.569 6.569 19 C 0.057 3.943 20 O -0.559 6.559 21 C -0.107 4.107 22 C -0.055 4.055 23 N 0.035 4.965 24 O -0.366 6.366 25 O -0.281 6.281 26 H 0.307 0.693 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.395 0.605 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.377 0.623 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.381 0.619 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.377 0.623 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.359 10.250 -8.079 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.173 4.173 3 Si 0.738 3.262 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.152 1.152 7 C -0.332 4.332 8 H 0.160 0.840 9 C 0.038 3.962 10 C -0.173 4.173 11 C -0.148 4.148 12 C 0.024 3.976 13 N -0.356 5.356 14 C 0.111 3.889 15 C -0.023 4.023 16 O -0.362 6.362 17 C 0.007 3.993 18 O -0.374 6.374 19 C -0.022 4.022 20 O -0.364 6.364 21 C -0.132 4.132 22 C -0.159 4.159 23 N 0.448 4.552 24 O -0.504 6.504 25 O -0.438 6.438 26 H 0.120 0.880 27 H 0.132 0.868 28 H 0.141 0.859 29 H 0.229 0.771 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.223 0.777 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.228 0.772 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.223 0.777 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.121 10.008 -7.808 18.988 hybrid contribution 0.283 0.625 -0.032 0.687 sum 14.404 10.633 -7.840 19.546 Atomic orbital electron populations 1.68911 1.09342 1.32919 1.21884 1.28223 0.95141 1.02853 0.91103 0.86263 0.81939 0.77688 0.80275 1.18199 1.20273 1.15169 1.22282 0.90627 0.96243 1.24089 0.83970 1.17141 0.93385 0.92145 0.93545 1.20732 0.93769 1.00582 1.02191 1.20771 0.94117 0.98397 1.01513 1.16788 0.82817 0.96385 1.01621 1.43171 1.02524 1.42186 1.47719 1.19831 0.91531 0.88768 0.88776 1.22795 1.00563 0.84594 0.94312 1.86444 1.84598 1.29029 1.36173 1.21996 0.91095 0.92672 0.93516 1.86344 1.24452 1.58863 1.67742 1.22809 0.98401 0.96212 0.84762 1.86433 1.82520 1.36264 1.31175 1.19392 0.92113 0.99213 1.02528 1.19166 0.90496 0.98511 1.07738 1.49583 1.01921 1.01998 1.01686 1.96055 1.65795 1.39741 1.48830 1.96036 0.90274 1.80854 1.76657 0.87999 0.86756 0.85931 0.77057 0.92701 0.91395 0.77659 0.92429 0.92333 0.77216 0.92678 0.91907 0.77703 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -15.79 13.89 55.99 0.78 -15.01 16 2 C 0.06 1.33 5.68 -15.17 -0.09 1.24 16 3 Si 0.91 16.51 24.51 -169.99 -4.17 12.34 16 4 H -0.26 -4.18 6.87 56.52 0.39 -3.79 16 5 H -0.28 -4.80 7.11 56.52 0.40 -4.39 16 6 H -0.23 -4.29 6.31 56.52 0.36 -3.93 16 7 C -0.30 -7.61 8.63 -35.74 -0.31 -7.92 16 8 H 0.14 3.99 5.65 -52.49 -0.30 3.69 16 9 C 0.04 1.04 5.22 -106.75 -0.56 0.48 16 10 C -0.15 -3.06 6.79 -39.11 -0.27 -3.33 16 11 C -0.13 -2.28 6.67 -39.72 -0.27 -2.54 16 12 C 0.13 2.37 6.25 -83.80 -0.52 1.85 16 13 N -0.72 -11.31 4.94 -45.85 -0.23 -11.54 16 14 C 0.20 2.63 0.46 -131.82 -0.06 2.57 16 15 C 0.06 0.70 5.38 37.16 0.20 0.90 16 16 O -0.56 -7.20 12.84 -35.23 -0.45 -7.65 16 17 C 0.09 0.98 5.73 37.16 0.21 1.19 16 18 O -0.57 -5.65 12.34 -35.23 -0.43 -6.08 16 19 C 0.06 0.70 5.53 37.15 0.21 0.91 16 20 O -0.56 -6.94 12.82 -35.23 -0.45 -7.39 16 21 C -0.11 -2.40 9.36 -39.73 -0.37 -2.77 16 22 C -0.06 -1.41 6.90 -79.48 -0.55 -1.96 16 23 N 0.03 1.01 4.98 34.19 0.17 1.18 16 24 O -0.37 -10.84 19.13 -31.57 -0.60 -11.44 16 25 O -0.28 -8.47 16.16 -31.57 -0.51 -8.98 16 26 H 0.31 5.83 8.27 -40.82 -0.34 5.50 16 27 H 0.11 2.07 4.36 -52.49 -0.23 1.85 16 28 H 0.12 1.80 3.31 -52.49 -0.17 1.63 16 29 H 0.40 5.99 8.47 -40.82 -0.35 5.64 16 30 H 0.05 0.61 7.69 -51.93 -0.40 0.21 16 31 H 0.07 0.89 4.50 -51.93 -0.23 0.66 16 32 H 0.38 3.32 9.12 45.56 0.42 3.74 16 33 H 0.06 0.66 7.65 -51.93 -0.40 0.27 16 34 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 35 H 0.38 2.10 9.12 45.56 0.42 2.51 16 36 H 0.06 0.60 7.72 -51.93 -0.40 0.20 16 37 H 0.06 0.81 4.81 -51.93 -0.25 0.56 16 38 H 0.38 3.10 9.12 45.56 0.42 3.51 16 39 H 0.12 2.69 7.54 -52.49 -0.40 2.30 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -33.79 319.47 -4.92 -38.71 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -1.46 Total: 20.43 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.37 Total: -9.39 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.72 Total: -25.37 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -2.45 Total: -41.54 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -4.17 Total: 12.34 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.79 -4.92 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167931198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.579 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds